Sed0007116 (gene) Chayote v1

Overview
NameSed0007116
Typegene
OrganismSechium edule (Chayote v1)
DescriptionF-box domain-containing protein
LocationLG06: 45082744 .. 45084431 (-)
RNA-Seq ExpressionSed0007116
SyntenySed0007116
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAAACTCGAGGGAGAATTGGGAATCAAGATCAAATTTGTGCGAAACCCTAGGCCATTGTTCTTCGTTCAATTCCATTCAATTGCTGCCATTTTTTCCACTAAACTTCGATCGACGATGAAGAACAAGCAAAATCAAGAGATTCGAAACATAAATTCAGAGCTTCATTGTTCAGTCATGGAGATCATCTTCTCGAAACTTCCGATCATCAATTTGTGGAGTTGCAGACTCGTATGCAAACAATGGAAAGATCTGATTTCAACTTGTAAGTTCGAATCTCCGATCTCGTTTTCCAACTTCTTATTTGTTCATAGATCTAGCAATCTCCTTGTTGTTGATTTCGATCCTATCCGTTTGGAATCCATGAGCACTGTCGCCACATTTAAATTCGATCCTGAATTGTCCACTGGTAATAGAAGAATCTCGATTGTCAATTCCTGTAATGGAATCCTCTGTGTGCTGGTTAAGGAAACTTTTAGAAAAGGAGGAATTACTCGTGGTGATGTTTGGATATTAAACCCTGTCACAAATGAGTATCTCAAACCTCGCATTTCGAAAGCTGATAGGAATCGAAAGTATCGTTATGGATTAGGATTGAATCCGAAAACCAACCAATACAAAATAGCAAGAAGTTCGAGGGTGTTAAACAAGTTGGGTACATTGGTAGAGATTTGGAAAACGAATTGCGAATGGGCTCGAATTAAGTTTCTGCCTCTCTTTTTCGCTGTTTGTAACCATGTTTACTTCGATGGAGGTATCTATATGGTTGGACAACAAGAAAATCGTCATGTCATTTATCGTATGGATGTCGAAAATGAGAGAATCAAAAAGATTTCGTTTCCGAGAGATTATGGCGAGTTTTGTCATATTGGAGAGGTTAATGGATGCCTCTTCATAACTACTCTCTATGATCGTTCTTTCTTGCATGTGCAGAGGATGAGACAAGACTATTCTTGGGATGTAGTAACTGTTTTTTCCTTTGGTTCGTTAGAGTCGCTTGATTTTCGATTCATGAAAGCTTATGAAGATGGGAAATTTTTGTTTCTTTTTAAGAAACTTGATTTGTTATTGTTTGACTACAAGTCTATGATGATAAGGGGGATATGGATGGATCAAGATAGTGAACTTGAGAAAATGAAGACTTTTCATCCGGTTGGTTCCATCAGTTTCAATTCTCTCGACAAGATTTTAGCTGGAAATTGTTGAAGGATTTTGATTTCTTCATCTGTTGTGTTTCTATATCTTGTTCTGTTCTTGGAAATTTTATATAGCTAGTATTGATACATATTATTAGGTGGTAGTTTGTTGCATAGAATACTCTTGATATCAATATCAATATCAATAGGAATCTGTGTTTTGCATAACTAGACGTTATGTAGTTATGTAGTTATCTTTTAGTACAACAATATTTAGGGGTCGGAGGAGCTGACTTCATGCCAAAACTGTTCTTCATGTCTTAACAATTGAGTTATATTTGAATACTAAGTTAACAACAAATAGTTATCTATCGAGTATATTAGCGAATGGATCAGATTTTTTGGTCTCTGTTCTGCTTTTTCGTTAGGGCAGGTTTCTTGATGTTTTCGAGCTCCGAAATTGATTCCGAGCTAGTCTCGAAAGTCTCTTTTTATACGATGATAGTTGGAGCACAACGGAATTTGTGAATGAGTTGGGAGCATGTTCTAG

mRNA sequence

ATGCTAAACTCGAGGGAGAATTGGGAATCAAGATCAAATTTGTGCGAAACCCTAGGCCATTGTTCTTCGTTCAATTCCATTCAATTGCTGCCATTTTTTCCACTAAACTTCGATCGACGATGAAGAACAAGCAAAATCAAGAGATTCGAAACATAAATTCAGAGCTTCATTGTTCAGTCATGGAGATCATCTTCTCGAAACTTCCGATCATCAATTTGTGGAGTTGCAGACTCGTATGCAAACAATGGAAAGATCTGATTTCAACTTGTAAGTTCGAATCTCCGATCTCGTTTTCCAACTTCTTATTTGTTCATAGATCTAGCAATCTCCTTGTTGTTGATTTCGATCCTATCCGTTTGGAATCCATGAGCACTGTCGCCACATTTAAATTCGATCCTGAATTGTCCACTGGTAATAGAAGAATCTCGATTGTCAATTCCTGTAATGGAATCCTCTGTGTGCTGGTTAAGGAAACTTTTAGAAAAGGAGGAATTACTCGTGGTGATGTTTGGATATTAAACCCTGTCACAAATGAGTATCTCAAACCTCGCATTTCGAAAGCTGATAGGAATCGAAAGTATCGTTATGGATTAGGATTGAATCCGAAAACCAACCAATACAAAATAGCAAGAAGTTCGAGGGTGTTAAACAAGTTGGGTACATTGGTAGAGATTTGGAAAACGAATTGCGAATGGGCTCGAATTAAGTTTCTGCCTCTCTTTTTCGCTGTTTGTAACCATGTTTACTTCGATGGAGGTATCTATATGGTTGGACAACAAGAAAATCGTCATGTCATTTATCGTATGGATGTCGAAAATGAGAGAATCAAAAAGATTTCGTTTCCGAGAGATTATGGCGAGTTTTGTCATATTGGAGAGGTTAATGGATGCCTCTTCATAACTACTCTCTATGATCGTTCTTTCTTGCATGTGCAGAGGATGAGACAAGACTATTCTTGGGATGTAGTAACTGTTTTTTCCTTTGGTTCGTTAGAGTCGCTTGATTTTCGATTCATGAAAGCTTATGAAGATGGGAAATTTTTGTTTCTTTTTAAGAAACTTGATTTGTTATTGTTTGACTACAAGTCTATGATGATAAGGGGGATATGGATGGATCAAGATAGTGAACTTGAGAAAATGAAGACTTTTCATCCGGTTGGTTCCATCAGTTTCAATTCTCTCGACAAGATTTTAGCTGGAAATTGTTGAAGGATTTTGATTTCTTCATCTGTTGTGTTTCTATATCTTGTTCTGTTCTTGGAAATTTTATATAGCTAGTATTGATACATATTATTAGGTGGTAGTTTGTTGCATAGAATACTCTTGATATCAATATCAATATCAATAGGAATCTGTGTTTTGCATAACTAGACGTTATGTAGTTATGTAGTTATCTTTTAGTACAACAATATTTAGGGGTCGGAGGAGCTGACTTCATGCCAAAACTGTTCTTCATGTCTTAACAATTGAGTTATATTTGAATACTAAGTTAACAACAAATAGTTATCTATCGAGTATATTAGCGAATGGATCAGATTTTTTGGTCTCTGTTCTGCTTTTTCGTTAGGGCAGGTTTCTTGATGTTTTCGAGCTCCGAAATTGATTCCGAGCTAGTCTCGAAAGTCTCTTTTTATACGATGATAGTTGGAGCACAACGGAATTTGTGAATGAGTTGGGAGCATGTTCTAG

Coding sequence (CDS)

ATGAAGAACAAGCAAAATCAAGAGATTCGAAACATAAATTCAGAGCTTCATTGTTCAGTCATGGAGATCATCTTCTCGAAACTTCCGATCATCAATTTGTGGAGTTGCAGACTCGTATGCAAACAATGGAAAGATCTGATTTCAACTTGTAAGTTCGAATCTCCGATCTCGTTTTCCAACTTCTTATTTGTTCATAGATCTAGCAATCTCCTTGTTGTTGATTTCGATCCTATCCGTTTGGAATCCATGAGCACTGTCGCCACATTTAAATTCGATCCTGAATTGTCCACTGGTAATAGAAGAATCTCGATTGTCAATTCCTGTAATGGAATCCTCTGTGTGCTGGTTAAGGAAACTTTTAGAAAAGGAGGAATTACTCGTGGTGATGTTTGGATATTAAACCCTGTCACAAATGAGTATCTCAAACCTCGCATTTCGAAAGCTGATAGGAATCGAAAGTATCGTTATGGATTAGGATTGAATCCGAAAACCAACCAATACAAAATAGCAAGAAGTTCGAGGGTGTTAAACAAGTTGGGTACATTGGTAGAGATTTGGAAAACGAATTGCGAATGGGCTCGAATTAAGTTTCTGCCTCTCTTTTTCGCTGTTTGTAACCATGTTTACTTCGATGGAGGTATCTATATGGTTGGACAACAAGAAAATCGTCATGTCATTTATCGTATGGATGTCGAAAATGAGAGAATCAAAAAGATTTCGTTTCCGAGAGATTATGGCGAGTTTTGTCATATTGGAGAGGTTAATGGATGCCTCTTCATAACTACTCTCTATGATCGTTCTTTCTTGCATGTGCAGAGGATGAGACAAGACTATTCTTGGGATGTAGTAACTGTTTTTTCCTTTGGTTCGTTAGAGTCGCTTGATTTTCGATTCATGAAAGCTTATGAAGATGGGAAATTTTTGTTTCTTTTTAAGAAACTTGATTTGTTATTGTTTGACTACAAGTCTATGATGATAAGGGGGATATGGATGGATCAAGATAGTGAACTTGAGAAAATGAAGACTTTTCATCCGGTTGGTTCCATCAGTTTCAATTCTCTCGACAAGATTTTAGCTGGAAATTGTTGA

Protein sequence

MKNKQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSNFLFVHRSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKETFRKGGITRGDVWILNPVTNEYLKPRISKADRNRKYRYGLGLNPKTNQYKIARSSRVLNKLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQENRHVIYRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTVFSFGSLESLDFRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSELEKMKTFHPVGSISFNSLDKILAGNC
Homology
BLAST of Sed0007116 vs. NCBI nr
Match: XP_038880514.1 (putative F-box protein At1g46984 [Benincasa hispida])

HSP 1 Score: 263.1 bits (671), Expect = 3.6e-66
Identity = 156/386 (40.41%), Postives = 225/386 (58.29%), Query Frame = 0

Query: 1   MKNKQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSN 60
           M+ K   +I+  NSEL   ++++IFSKLP  NL +CRLV   W +L+ +CKF+  IS SN
Sbjct: 1   MEKKPKSKIKTTNSELPPDILQLIFSKLPFFNLPTCRLVSATWNNLVLSCKFDPSISISN 60

Query: 61  FLFVH----RSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLV 120
             F H    R  NL  VD DP  LE MSTVA+F F P +S+G+ +ISI+NSC+G++ +L+
Sbjct: 61  LFFAHFYSCRDRNLHCVDLDPQHLEGMSTVASFTFHPNVSSGSCKISIINSCSGLISLLI 120

Query: 121 KETFRKGGITRGDVWILNPVTNEYLK-PRI-SKADRNRKYRYGLGLNPKTNQYKIARSSR 180
            +  R+ G   G V +LNP+TNEY K P   SK D  + Y YGLG +P+T QYK+AR+  
Sbjct: 121 TKR-RRRGHRPGVVCVLNPMTNEYFKLPTFRSKGDSVKDYFYGLGFSPRTKQYKLARTHY 180

Query: 181 VLNKLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQENRH-----VIYRM 240
           V ++    +  + T+CEW  +  +P F    + VYF+GG+Y VG Q+  +     VIYR+
Sbjct: 181 VCHEFIVEIFAFGTSCEWTPVGSVPYFLNEYHGVYFNGGLYWVGGQQLPNAGLSDVIYRL 240

Query: 241 DVENERIKKISFP---RDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSW--DVVT 300
           D+E+++ K+ISFP    D G+F +IG  N  L++T        HV +M +D+SW  + V 
Sbjct: 241 DLEDDKFKQISFPLDGDDEGDFPYIGVYNDTLYLTLCCGDFEYHVWKMEEDFSWIKEFVL 300

Query: 301 VFSFGSLESLD--------FRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSE 360
                   SL          + +KA EDG  L L   L L+L+D K+     +  DQD E
Sbjct: 301 ALPENVHHSLPRHHPIGYCLQLIKACEDGNILCLCAGLYLILYDPKTETTE-LLTDQDFE 360

Query: 361 LEKMKTFHPVGSISFNSLDKILAGNC 363
           ++K    + + S +FNSL  ILAG C
Sbjct: 361 IKKHMWVYQIDSFNFNSLHNILAGKC 384

BLAST of Sed0007116 vs. NCBI nr
Match: XP_004135796.1 (putative F-box protein At1g46984 [Cucumis sativus] >KGN66126.1 hypothetical protein Csa_007182 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 2.2e-63
Identity = 151/386 (39.12%), Postives = 218/386 (56.48%), Query Frame = 0

Query: 1   MKNKQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSN 60
           M+ K    I N  SEL   V+++IFSKLP  NL +CRLV   W +LIS+CKF+  IS S+
Sbjct: 1   MEKKPKTNIVNKRSELPPDVLQLIFSKLPFFNLPTCRLVSTTWNNLISSCKFDPSISISH 60

Query: 61  FLFVH----RSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLV 120
             F      R  NL  V+FDP   E MSTVA+F F P+LS+G+ RI+I+NSC+G++ +++
Sbjct: 61  LFFARFYSSRHPNLHCVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINSCSGLISLII 120

Query: 121 KETFRKGGITRGD-VWILNPVTNEYLK--PRISKADRNRKYRYGLGLNPKTNQYKIARSS 180
            +  R+G   R D V +LNP+TNEY K     SK DR   Y YGLG +P TNQYK+AR+ 
Sbjct: 121 NKRRRRG--HRLDLVCVLNPITNEYFKLPTSRSKGDRVPNYCYGLGFSPTTNQYKLARTH 180

Query: 181 RVLNKLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQ--------ENRHV 240
              ++    +  + T+CEW  +  +P F    + VY +GG+Y VG Q        +   V
Sbjct: 181 FTHDEFIVDIFAFGTSCEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQKLPNGGISDYTEV 240

Query: 241 IYRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTV 300
           IYR+D+++E+ +KISFP D G+  +I   NG L++T   +    H  +M +D+SW    V
Sbjct: 241 IYRLDLKDEKFEKISFPLDGGDDPYIAVYNGTLYLTFCCEDFDYHAWKMEEDFSWSKEFV 300

Query: 301 FSFGSLESLDFR---------FMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSE 360
            +         R          +K  EDG  L L+  + L+L+D  +  +  I  +QD E
Sbjct: 301 LALPENVHHSLRHHPIGYYLQLIKFCEDGNILCLYAGILLILYDPSTQTVE-ILTNQDFE 360

Query: 361 LEKMKTFHPVGSISFNSLDKILAGNC 363
           +++    H + S SFNSL  ILAG C
Sbjct: 361 IKEAMWVHQIESFSFNSLHNILAGKC 383

BLAST of Sed0007116 vs. NCBI nr
Match: XP_008450717.1 (PREDICTED: putative F-box protein At3g21120 [Cucumis melo] >TYK10199.1 putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 241.5 bits (615), Expect = 1.1e-59
Identity = 145/384 (37.76%), Postives = 215/384 (55.99%), Query Frame = 0

Query: 4   KQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSNFLF 63
           K    I N + EL   +++ IFSK+P  NL +CRLV + W +LIS+CKF+   S  +  F
Sbjct: 3   KPKTNIINKSYELPPDILQQIFSKIPFFNLPTCRLVSRTWNNLISSCKFDPSTSIYHLFF 62

Query: 64  VH----RSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKET 123
                 R  NL  V+FDP  +E MS VA+F F P+  + + RI+I+NSC+G++ +L+ + 
Sbjct: 63  ARFYSSRHRNLHCVEFDPQHVEGMSIVASFAFHPDFCSASSRITIINSCSGLISLLITKR 122

Query: 124 FRKGGITRGDVWILNPVTNEYLK-PRIS-KADRNRKYRYGLGLNPKTNQYKIARSSRVLN 183
            R+ G  R  V +LNP+TNEY K P +  K D+   Y YGLG +PKTNQYK+AR+    N
Sbjct: 123 -RRRGQRRDVVCVLNPITNEYFKHPNLRLKGDKVPNYCYGLGFSPKTNQYKLARTHFAHN 182

Query: 184 KLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQEN---------RHVIYR 243
           +    +  + T+CEW  I  +P F    + VYF+GG+Y VG Q+            V+YR
Sbjct: 183 EFIVDIFAFGTSCEWTPIGSVPNFLNEYHGVYFNGGLYWVGSQKQLPNGGLSDYTGVVYR 242

Query: 244 MDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSW--DVVTVF 303
           +D+ +E+ KKIS P   G+  ++G  NG L++T   +    HV +M++D+SW  + V   
Sbjct: 243 LDLNDEKFKKISIPFG-GDEPYVGVYNGTLYLTLCCEDFDYHVWKMKEDFSWSKEFVLAL 302

Query: 304 SFGSLESLD--------FRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSELE 363
               L SL          + +K  EDG  L L   + L+++D K+  +  I  DQD E++
Sbjct: 303 PENILHSLHRHHPIGYYLQLVKFCEDGSILCLCAGILLIVYDPKTQQME-ILTDQDFEIK 362

BLAST of Sed0007116 vs. NCBI nr
Match: XP_004134745.1 (F-box protein At3g07870 [Cucumis sativus] >XP_011658168.1 F-box protein At3g07870 [Cucumis sativus] >XP_031743637.1 F-box protein At3g07870 [Cucumis sativus] >KGN49139.1 hypothetical protein Csa_003023 [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 4.3e-59
Identity = 154/388 (39.69%), Postives = 219/388 (56.44%), Query Frame = 0

Query: 1   MKNKQNQEIRNI-NSEL-HCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISF 60
           M+ K   EI+ + NSE    +++++I SK+P+ NL SCRLVCK W +LI TCKF+ P  F
Sbjct: 1   MEKKWKGEIKKLSNSEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLILTCKFD-PSLF 60

Query: 61  SNFLFVHRSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKE 120
            +F +   S  L  VDFDP+  E M+++ +F F P+ ST +  ISI+N+CNG+L +L+ +
Sbjct: 61  LSFAYDCPSRTLYCVDFDPMYFEGMNSIGSFTFHPKFSTSDSSISIINACNGLLSLLISK 120

Query: 121 TFRKGGITRGDVWILNPVTNEYLKPRISKADRN----RKYRYGLGLNPKTNQYKIARSSR 180
             RK G     + ILNP+TNEY K    K+  +    R Y YGLG NPKT QYKIAR+S 
Sbjct: 121 --RKLGSVSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTSF 180

Query: 181 VLNKLGTLVEIW---KTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQENRH-----VI 240
             ++  TLVEI+    T+  W  + FLP      + VYF GG+Y V  Q + H      I
Sbjct: 181 RPDESTTLVEIFTFGSTHQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSISAI 240

Query: 241 YRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTVF 300
           YR+D+ENE+++KIS P+  G     G  +G L++T   +  +  V +M+ ++SW    V 
Sbjct: 241 YRLDLENEKLEKISCPQYIGGHFFFGVFDGTLYLTVSKNNKY-QVWKMKDNFSWIKAFVI 300

Query: 301 SF-------------GSLESLDFRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQ 360
           S                +  LD   +KA EDGK L L   L L+L+D K+     I  DQ
Sbjct: 301 SRPRNLCHPDHPHQPWGVSQLD--PIKACEDGKILCLLAGLHLILYDPKTKSAE-ILTDQ 360

Query: 361 DSELEKMKTFHPVGSISFNSLDKILAGN 362
             ++EK    H + + +FNSL  ILAGN
Sbjct: 361 SVKVEKHLHVHHIDAFNFNSLPSILAGN 381

BLAST of Sed0007116 vs. NCBI nr
Match: TYK13067.1 (putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-58
Identity = 152/388 (39.18%), Postives = 216/388 (55.67%), Query Frame = 0

Query: 1   MKNKQNQEIRNI-NSEL-HCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISF 60
           M+ K   EI+ + NSE    +++++I SK+P+ NL SCRLVCK W +L+ TCKF+ P  F
Sbjct: 1   MEKKWKGEIKKLSNSEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLVLTCKFD-PSLF 60

Query: 61  SNFLFVHRSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKE 120
            +  +   S  L  VDFDP+  E M++V +F F P+ ST +  ISI+N+CNG+L +L+ +
Sbjct: 61  ISLAYDCPSRTLYCVDFDPMYSEGMNSVGSFSFHPKFSTSSSSISIINACNGLLSLLISK 120

Query: 121 TFRKGGITRGDVWILNPVTNEYLKPRISKADRN----RKYRYGLGLNPKTNQYKIARSSR 180
             RK G     + ILNP+TNEY K    K+  +    R Y YGLG NPK  QYKIAR+S 
Sbjct: 121 --RKPGSVSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIARTSF 180

Query: 181 VLNKLGTLVEIW---KTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQENRH-----VI 240
             ++  TLVEI+    T   W  + FLP      + VYF+GG+Y V  Q + H      I
Sbjct: 181 RPDESTTLVEIFAFGSTYQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSISTI 240

Query: 241 YRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTVF 300
           YR+D+ENE ++KIS P+  G     G  +G L++T   +  +  V +M+ ++SW  +  F
Sbjct: 241 YRLDIENENLEKISCPQHLGGHFFFGVFDGTLYLTVSKNNKY-QVWKMKDNFSW--IKAF 300

Query: 301 SFGSLESL-------------DFRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQ 360
              S  +L                 +KA EDGK L L   L L+L+D K+     I  DQ
Sbjct: 301 VISSPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKSAE-ILTDQ 360

Query: 361 DSELEKMKTFHPVGSISFNSLDKILAGN 362
             ++EK    H + S +FNSL  ILAGN
Sbjct: 361 SVKVEKHLHVHHIDSFNFNSLPNILAGN 381

BLAST of Sed0007116 vs. ExPASy TrEMBL
Match: A0A0A0M1M5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G572960 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.1e-63
Identity = 151/386 (39.12%), Postives = 218/386 (56.48%), Query Frame = 0

Query: 1   MKNKQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSN 60
           M+ K    I N  SEL   V+++IFSKLP  NL +CRLV   W +LIS+CKF+  IS S+
Sbjct: 1   MEKKPKTNIVNKRSELPPDVLQLIFSKLPFFNLPTCRLVSTTWNNLISSCKFDPSISISH 60

Query: 61  FLFVH----RSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLV 120
             F      R  NL  V+FDP   E MSTVA+F F P+LS+G+ RI+I+NSC+G++ +++
Sbjct: 61  LFFARFYSSRHPNLHCVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINSCSGLISLII 120

Query: 121 KETFRKGGITRGD-VWILNPVTNEYLK--PRISKADRNRKYRYGLGLNPKTNQYKIARSS 180
            +  R+G   R D V +LNP+TNEY K     SK DR   Y YGLG +P TNQYK+AR+ 
Sbjct: 121 NKRRRRG--HRLDLVCVLNPITNEYFKLPTSRSKGDRVPNYCYGLGFSPTTNQYKLARTH 180

Query: 181 RVLNKLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQ--------ENRHV 240
              ++    +  + T+CEW  +  +P F    + VY +GG+Y VG Q        +   V
Sbjct: 181 FTHDEFIVDIFAFGTSCEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQKLPNGGISDYTEV 240

Query: 241 IYRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTV 300
           IYR+D+++E+ +KISFP D G+  +I   NG L++T   +    H  +M +D+SW    V
Sbjct: 241 IYRLDLKDEKFEKISFPLDGGDDPYIAVYNGTLYLTFCCEDFDYHAWKMEEDFSWSKEFV 300

Query: 301 FSFGSLESLDFR---------FMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSE 360
            +         R          +K  EDG  L L+  + L+L+D  +  +  I  +QD E
Sbjct: 301 LALPENVHHSLRHHPIGYYLQLIKFCEDGNILCLYAGILLILYDPSTQTVE-ILTNQDFE 360

Query: 361 LEKMKTFHPVGSISFNSLDKILAGNC 363
           +++    H + S SFNSL  ILAG C
Sbjct: 361 IKEAMWVHQIESFSFNSLHNILAGKC 383

BLAST of Sed0007116 vs. ExPASy TrEMBL
Match: A0A5D3CIX9 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003440 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.4e-60
Identity = 145/384 (37.76%), Postives = 215/384 (55.99%), Query Frame = 0

Query: 4   KQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSNFLF 63
           K    I N + EL   +++ IFSK+P  NL +CRLV + W +LIS+CKF+   S  +  F
Sbjct: 3   KPKTNIINKSYELPPDILQQIFSKIPFFNLPTCRLVSRTWNNLISSCKFDPSTSIYHLFF 62

Query: 64  VH----RSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKET 123
                 R  NL  V+FDP  +E MS VA+F F P+  + + RI+I+NSC+G++ +L+ + 
Sbjct: 63  ARFYSSRHRNLHCVEFDPQHVEGMSIVASFAFHPDFCSASSRITIINSCSGLISLLITKR 122

Query: 124 FRKGGITRGDVWILNPVTNEYLK-PRIS-KADRNRKYRYGLGLNPKTNQYKIARSSRVLN 183
            R+ G  R  V +LNP+TNEY K P +  K D+   Y YGLG +PKTNQYK+AR+    N
Sbjct: 123 -RRRGQRRDVVCVLNPITNEYFKHPNLRLKGDKVPNYCYGLGFSPKTNQYKLARTHFAHN 182

Query: 184 KLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQEN---------RHVIYR 243
           +    +  + T+CEW  I  +P F    + VYF+GG+Y VG Q+            V+YR
Sbjct: 183 EFIVDIFAFGTSCEWTPIGSVPNFLNEYHGVYFNGGLYWVGSQKQLPNGGLSDYTGVVYR 242

Query: 244 MDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSW--DVVTVF 303
           +D+ +E+ KKIS P   G+  ++G  NG L++T   +    HV +M++D+SW  + V   
Sbjct: 243 LDLNDEKFKKISIPFG-GDEPYVGVYNGTLYLTLCCEDFDYHVWKMKEDFSWSKEFVLAL 302

Query: 304 SFGSLESLD--------FRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSELE 363
               L SL          + +K  EDG  L L   + L+++D K+  +  I  DQD E++
Sbjct: 303 PENILHSLHRHHPIGYYLQLVKFCEDGSILCLCAGILLIVYDPKTQQME-ILTDQDFEIK 362

BLAST of Sed0007116 vs. ExPASy TrEMBL
Match: A0A1S3BQV8 (putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103492215 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.4e-60
Identity = 145/384 (37.76%), Postives = 215/384 (55.99%), Query Frame = 0

Query: 4   KQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSNFLF 63
           K    I N + EL   +++ IFSK+P  NL +CRLV + W +LIS+CKF+   S  +  F
Sbjct: 3   KPKTNIINKSYELPPDILQQIFSKIPFFNLPTCRLVSRTWNNLISSCKFDPSTSIYHLFF 62

Query: 64  VH----RSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKET 123
                 R  NL  V+FDP  +E MS VA+F F P+  + + RI+I+NSC+G++ +L+ + 
Sbjct: 63  ARFYSSRHRNLHCVEFDPQHVEGMSIVASFAFHPDFCSASSRITIINSCSGLISLLITKR 122

Query: 124 FRKGGITRGDVWILNPVTNEYLK-PRIS-KADRNRKYRYGLGLNPKTNQYKIARSSRVLN 183
            R+ G  R  V +LNP+TNEY K P +  K D+   Y YGLG +PKTNQYK+AR+    N
Sbjct: 123 -RRRGQRRDVVCVLNPITNEYFKHPNLRLKGDKVPNYCYGLGFSPKTNQYKLARTHFAHN 182

Query: 184 KLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQEN---------RHVIYR 243
           +    +  + T+CEW  I  +P F    + VYF+GG+Y VG Q+            V+YR
Sbjct: 183 EFIVDIFAFGTSCEWTPIGSVPNFLNEYHGVYFNGGLYWVGSQKQLPNGGLSDYTGVVYR 242

Query: 244 MDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSW--DVVTVF 303
           +D+ +E+ KKIS P   G+  ++G  NG L++T   +    HV +M++D+SW  + V   
Sbjct: 243 LDLNDEKFKKISIPFG-GDEPYVGVYNGTLYLTLCCEDFDYHVWKMKEDFSWSKEFVLAL 302

Query: 304 SFGSLESLD--------FRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSELE 363
               L SL          + +K  EDG  L L   + L+++D K+  +  I  DQD E++
Sbjct: 303 PENILHSLHRHHPIGYYLQLVKFCEDGSILCLCAGILLIVYDPKTQQME-ILTDQDFEIK 362

BLAST of Sed0007116 vs. ExPASy TrEMBL
Match: A0A0A0KJY9 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G515480 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-59
Identity = 154/388 (39.69%), Postives = 219/388 (56.44%), Query Frame = 0

Query: 1   MKNKQNQEIRNI-NSEL-HCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISF 60
           M+ K   EI+ + NSE    +++++I SK+P+ NL SCRLVCK W +LI TCKF+ P  F
Sbjct: 1   MEKKWKGEIKKLSNSEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLILTCKFD-PSLF 60

Query: 61  SNFLFVHRSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKE 120
            +F +   S  L  VDFDP+  E M+++ +F F P+ ST +  ISI+N+CNG+L +L+ +
Sbjct: 61  LSFAYDCPSRTLYCVDFDPMYFEGMNSIGSFTFHPKFSTSDSSISIINACNGLLSLLISK 120

Query: 121 TFRKGGITRGDVWILNPVTNEYLKPRISKADRN----RKYRYGLGLNPKTNQYKIARSSR 180
             RK G     + ILNP+TNEY K    K+  +    R Y YGLG NPKT QYKIAR+S 
Sbjct: 121 --RKLGSVSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTSF 180

Query: 181 VLNKLGTLVEIW---KTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQENRH-----VI 240
             ++  TLVEI+    T+  W  + FLP      + VYF GG+Y V  Q + H      I
Sbjct: 181 RPDESTTLVEIFTFGSTHQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSISAI 240

Query: 241 YRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTVF 300
           YR+D+ENE+++KIS P+  G     G  +G L++T   +  +  V +M+ ++SW    V 
Sbjct: 241 YRLDLENEKLEKISCPQYIGGHFFFGVFDGTLYLTVSKNNKY-QVWKMKDNFSWIKAFVI 300

Query: 301 SF-------------GSLESLDFRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQ 360
           S                +  LD   +KA EDGK L L   L L+L+D K+     I  DQ
Sbjct: 301 SRPRNLCHPDHPHQPWGVSQLD--PIKACEDGKILCLLAGLHLILYDPKTKSAE-ILTDQ 360

Query: 361 DSELEKMKTFHPVGSISFNSLDKILAGN 362
             ++EK    H + + +FNSL  ILAGN
Sbjct: 361 SVKVEKHLHVHHIDAFNFNSLPSILAGN 381

BLAST of Sed0007116 vs. ExPASy TrEMBL
Match: A0A5D3CM94 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006720 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 6.0e-59
Identity = 152/388 (39.18%), Postives = 216/388 (55.67%), Query Frame = 0

Query: 1   MKNKQNQEIRNI-NSEL-HCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISF 60
           M+ K   EI+ + NSE    +++++I SK+P+ NL SCRLVCK W +L+ TCKF+ P  F
Sbjct: 1   MEKKWKGEIKKLSNSEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLVLTCKFD-PSLF 60

Query: 61  SNFLFVHRSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKE 120
            +  +   S  L  VDFDP+  E M++V +F F P+ ST +  ISI+N+CNG+L +L+ +
Sbjct: 61  ISLAYDCPSRTLYCVDFDPMYSEGMNSVGSFSFHPKFSTSSSSISIINACNGLLSLLISK 120

Query: 121 TFRKGGITRGDVWILNPVTNEYLKPRISKADRN----RKYRYGLGLNPKTNQYKIARSSR 180
             RK G     + ILNP+TNEY K    K+  +    R Y YGLG NPK  QYKIAR+S 
Sbjct: 121 --RKPGSVSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIARTSF 180

Query: 181 VLNKLGTLVEIW---KTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQENRH-----VI 240
             ++  TLVEI+    T   W  + FLP      + VYF+GG+Y V  Q + H      I
Sbjct: 181 RPDESTTLVEIFAFGSTYQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSISTI 240

Query: 241 YRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTVF 300
           YR+D+ENE ++KIS P+  G     G  +G L++T   +  +  V +M+ ++SW  +  F
Sbjct: 241 YRLDIENENLEKISCPQHLGGHFFFGVFDGTLYLTVSKNNKY-QVWKMKDNFSW--IKAF 300

Query: 301 SFGSLESL-------------DFRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQ 360
              S  +L                 +KA EDGK L L   L L+L+D K+     I  DQ
Sbjct: 301 VISSPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKSAE-ILTDQ 360

Query: 361 DSELEKMKTFHPVGSISFNSLDKILAGN 362
             ++EK    H + S +FNSL  ILAGN
Sbjct: 361 SVKVEKHLHVHHIDSFNFNSLPNILAGN 381

BLAST of Sed0007116 vs. TAIR 10
Match: AT5G41510.1 (F-box and associated interaction domains-containing protein )

HSP 1 Score: 45.1 bits (105), Expect = 1.4e-04
Identity = 36/115 (31.30%), Postives = 53/115 (46.09%), Query Frame = 0

Query: 14  SELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSNFLFVHRSSNLLVV 73
           S L   ++E IFS++P+ ++ + RL CK W +L    K ES           R    ++V
Sbjct: 6   SNLPRDLIEEIFSRVPLTSMKAVRLTCKSWNNL---SKSESFTKVHIGRAATREEKTMIV 65

Query: 74  DFDPIRLESMSTV-------ATFKFDPELSTGNRRISIVNSCNGILCVLVKETFR 122
           D  P +L  MS V       A FK    L   N RI+ V    G+L  ++K+  R
Sbjct: 66  DVMPHKLNLMSIVIDDVTPSAEFKGQFSLLHKNYRINQVLHYEGLLLCIMKDPTR 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038880514.13.6e-6640.41putative F-box protein At1g46984 [Benincasa hispida][more]
XP_004135796.12.2e-6339.12putative F-box protein At1g46984 [Cucumis sativus] >KGN66126.1 hypothetical prot... [more]
XP_008450717.11.1e-5937.76PREDICTED: putative F-box protein At3g21120 [Cucumis melo] >TYK10199.1 putative ... [more]
XP_004134745.14.3e-5939.69F-box protein At3g07870 [Cucumis sativus] >XP_011658168.1 F-box protein At3g0787... [more]
TYK13067.11.2e-5839.18putative F-box protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0M1M51.1e-6339.12F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G572960 PE=4 ... [more]
A0A5D3CIX95.4e-6037.76Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1... [more]
A0A1S3BQV85.4e-6037.76putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103492215 PE=4 SV... [more]
A0A0A0KJY92.1e-5939.69F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G515480 PE=4 ... [more]
A0A5D3CM946.0e-5939.18Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
Match NameE-valueIdentityDescription
AT5G41510.11.4e-0431.30F-box and associated interaction domains-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF00646F-boxcoord: 20..52
e-value: 1.5E-6
score: 27.9
NoneNo IPR availableGENE3D1.20.1280.50coord: 11..53
e-value: 1.4E-7
score: 33.1
NoneNo IPR availablePANTHERPTHR47993:SF20F-BOX FAMILY PROTEINcoord: 20..290
NoneNo IPR availablePANTHERPTHR47993OS09G0372900 PROTEIN-RELATEDcoord: 20..290
IPR011043Galactose oxidase/kelch, beta-propellerSUPERFAMILY50965Galactose oxidase, central domaincoord: 105..291
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 19..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0007116.1Sed0007116.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding