Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAAACTCGAGGGAGAATTGGGAATCAAGATCAAATTTGTGCGAAACCCTAGGCCATTGTTCTTCGTTCAATTCCATTCAATTGCTGCCATTTTTTCCACTAAACTTCGATCGACGATGAAGAACAAGCAAAATCAAGAGATTCGAAACATAAATTCAGAGCTTCATTGTTCAGTCATGGAGATCATCTTCTCGAAACTTCCGATCATCAATTTGTGGAGTTGCAGACTCGTATGCAAACAATGGAAAGATCTGATTTCAACTTGTAAGTTCGAATCTCCGATCTCGTTTTCCAACTTCTTATTTGTTCATAGATCTAGCAATCTCCTTGTTGTTGATTTCGATCCTATCCGTTTGGAATCCATGAGCACTGTCGCCACATTTAAATTCGATCCTGAATTGTCCACTGGTAATAGAAGAATCTCGATTGTCAATTCCTGTAATGGAATCCTCTGTGTGCTGGTTAAGGAAACTTTTAGAAAAGGAGGAATTACTCGTGGTGATGTTTGGATATTAAACCCTGTCACAAATGAGTATCTCAAACCTCGCATTTCGAAAGCTGATAGGAATCGAAAGTATCGTTATGGATTAGGATTGAATCCGAAAACCAACCAATACAAAATAGCAAGAAGTTCGAGGGTGTTAAACAAGTTGGGTACATTGGTAGAGATTTGGAAAACGAATTGCGAATGGGCTCGAATTAAGTTTCTGCCTCTCTTTTTCGCTGTTTGTAACCATGTTTACTTCGATGGAGGTATCTATATGGTTGGACAACAAGAAAATCGTCATGTCATTTATCGTATGGATGTCGAAAATGAGAGAATCAAAAAGATTTCGTTTCCGAGAGATTATGGCGAGTTTTGTCATATTGGAGAGGTTAATGGATGCCTCTTCATAACTACTCTCTATGATCGTTCTTTCTTGCATGTGCAGAGGATGAGACAAGACTATTCTTGGGATGTAGTAACTGTTTTTTCCTTTGGTTCGTTAGAGTCGCTTGATTTTCGATTCATGAAAGCTTATGAAGATGGGAAATTTTTGTTTCTTTTTAAGAAACTTGATTTGTTATTGTTTGACTACAAGTCTATGATGATAAGGGGGATATGGATGGATCAAGATAGTGAACTTGAGAAAATGAAGACTTTTCATCCGGTTGGTTCCATCAGTTTCAATTCTCTCGACAAGATTTTAGCTGGAAATTGTTGAAGGATTTTGATTTCTTCATCTGTTGTGTTTCTATATCTTGTTCTGTTCTTGGAAATTTTATATAGCTAGTATTGATACATATTATTAGGTGGTAGTTTGTTGCATAGAATACTCTTGATATCAATATCAATATCAATAGGAATCTGTGTTTTGCATAACTAGACGTTATGTAGTTATGTAGTTATCTTTTAGTACAACAATATTTAGGGGTCGGAGGAGCTGACTTCATGCCAAAACTGTTCTTCATGTCTTAACAATTGAGTTATATTTGAATACTAAGTTAACAACAAATAGTTATCTATCGAGTATATTAGCGAATGGATCAGATTTTTTGGTCTCTGTTCTGCTTTTTCGTTAGGGCAGGTTTCTTGATGTTTTCGAGCTCCGAAATTGATTCCGAGCTAGTCTCGAAAGTCTCTTTTTATACGATGATAGTTGGAGCACAACGGAATTTGTGAATGAGTTGGGAGCATGTTCTAG
mRNA sequence
ATGCTAAACTCGAGGGAGAATTGGGAATCAAGATCAAATTTGTGCGAAACCCTAGGCCATTGTTCTTCGTTCAATTCCATTCAATTGCTGCCATTTTTTCCACTAAACTTCGATCGACGATGAAGAACAAGCAAAATCAAGAGATTCGAAACATAAATTCAGAGCTTCATTGTTCAGTCATGGAGATCATCTTCTCGAAACTTCCGATCATCAATTTGTGGAGTTGCAGACTCGTATGCAAACAATGGAAAGATCTGATTTCAACTTGTAAGTTCGAATCTCCGATCTCGTTTTCCAACTTCTTATTTGTTCATAGATCTAGCAATCTCCTTGTTGTTGATTTCGATCCTATCCGTTTGGAATCCATGAGCACTGTCGCCACATTTAAATTCGATCCTGAATTGTCCACTGGTAATAGAAGAATCTCGATTGTCAATTCCTGTAATGGAATCCTCTGTGTGCTGGTTAAGGAAACTTTTAGAAAAGGAGGAATTACTCGTGGTGATGTTTGGATATTAAACCCTGTCACAAATGAGTATCTCAAACCTCGCATTTCGAAAGCTGATAGGAATCGAAAGTATCGTTATGGATTAGGATTGAATCCGAAAACCAACCAATACAAAATAGCAAGAAGTTCGAGGGTGTTAAACAAGTTGGGTACATTGGTAGAGATTTGGAAAACGAATTGCGAATGGGCTCGAATTAAGTTTCTGCCTCTCTTTTTCGCTGTTTGTAACCATGTTTACTTCGATGGAGGTATCTATATGGTTGGACAACAAGAAAATCGTCATGTCATTTATCGTATGGATGTCGAAAATGAGAGAATCAAAAAGATTTCGTTTCCGAGAGATTATGGCGAGTTTTGTCATATTGGAGAGGTTAATGGATGCCTCTTCATAACTACTCTCTATGATCGTTCTTTCTTGCATGTGCAGAGGATGAGACAAGACTATTCTTGGGATGTAGTAACTGTTTTTTCCTTTGGTTCGTTAGAGTCGCTTGATTTTCGATTCATGAAAGCTTATGAAGATGGGAAATTTTTGTTTCTTTTTAAGAAACTTGATTTGTTATTGTTTGACTACAAGTCTATGATGATAAGGGGGATATGGATGGATCAAGATAGTGAACTTGAGAAAATGAAGACTTTTCATCCGGTTGGTTCCATCAGTTTCAATTCTCTCGACAAGATTTTAGCTGGAAATTGTTGAAGGATTTTGATTTCTTCATCTGTTGTGTTTCTATATCTTGTTCTGTTCTTGGAAATTTTATATAGCTAGTATTGATACATATTATTAGGTGGTAGTTTGTTGCATAGAATACTCTTGATATCAATATCAATATCAATAGGAATCTGTGTTTTGCATAACTAGACGTTATGTAGTTATGTAGTTATCTTTTAGTACAACAATATTTAGGGGTCGGAGGAGCTGACTTCATGCCAAAACTGTTCTTCATGTCTTAACAATTGAGTTATATTTGAATACTAAGTTAACAACAAATAGTTATCTATCGAGTATATTAGCGAATGGATCAGATTTTTTGGTCTCTGTTCTGCTTTTTCGTTAGGGCAGGTTTCTTGATGTTTTCGAGCTCCGAAATTGATTCCGAGCTAGTCTCGAAAGTCTCTTTTTATACGATGATAGTTGGAGCACAACGGAATTTGTGAATGAGTTGGGAGCATGTTCTAG
Coding sequence (CDS)
ATGAAGAACAAGCAAAATCAAGAGATTCGAAACATAAATTCAGAGCTTCATTGTTCAGTCATGGAGATCATCTTCTCGAAACTTCCGATCATCAATTTGTGGAGTTGCAGACTCGTATGCAAACAATGGAAAGATCTGATTTCAACTTGTAAGTTCGAATCTCCGATCTCGTTTTCCAACTTCTTATTTGTTCATAGATCTAGCAATCTCCTTGTTGTTGATTTCGATCCTATCCGTTTGGAATCCATGAGCACTGTCGCCACATTTAAATTCGATCCTGAATTGTCCACTGGTAATAGAAGAATCTCGATTGTCAATTCCTGTAATGGAATCCTCTGTGTGCTGGTTAAGGAAACTTTTAGAAAAGGAGGAATTACTCGTGGTGATGTTTGGATATTAAACCCTGTCACAAATGAGTATCTCAAACCTCGCATTTCGAAAGCTGATAGGAATCGAAAGTATCGTTATGGATTAGGATTGAATCCGAAAACCAACCAATACAAAATAGCAAGAAGTTCGAGGGTGTTAAACAAGTTGGGTACATTGGTAGAGATTTGGAAAACGAATTGCGAATGGGCTCGAATTAAGTTTCTGCCTCTCTTTTTCGCTGTTTGTAACCATGTTTACTTCGATGGAGGTATCTATATGGTTGGACAACAAGAAAATCGTCATGTCATTTATCGTATGGATGTCGAAAATGAGAGAATCAAAAAGATTTCGTTTCCGAGAGATTATGGCGAGTTTTGTCATATTGGAGAGGTTAATGGATGCCTCTTCATAACTACTCTCTATGATCGTTCTTTCTTGCATGTGCAGAGGATGAGACAAGACTATTCTTGGGATGTAGTAACTGTTTTTTCCTTTGGTTCGTTAGAGTCGCTTGATTTTCGATTCATGAAAGCTTATGAAGATGGGAAATTTTTGTTTCTTTTTAAGAAACTTGATTTGTTATTGTTTGACTACAAGTCTATGATGATAAGGGGGATATGGATGGATCAAGATAGTGAACTTGAGAAAATGAAGACTTTTCATCCGGTTGGTTCCATCAGTTTCAATTCTCTCGACAAGATTTTAGCTGGAAATTGTTGA
Protein sequence
MKNKQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSNFLFVHRSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKETFRKGGITRGDVWILNPVTNEYLKPRISKADRNRKYRYGLGLNPKTNQYKIARSSRVLNKLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQENRHVIYRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTVFSFGSLESLDFRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSELEKMKTFHPVGSISFNSLDKILAGNC
Homology
BLAST of Sed0007116 vs. NCBI nr
Match:
XP_038880514.1 (putative F-box protein At1g46984 [Benincasa hispida])
HSP 1 Score: 263.1 bits (671), Expect = 3.6e-66
Identity = 156/386 (40.41%), Postives = 225/386 (58.29%), Query Frame = 0
Query: 1 MKNKQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSN 60
M+ K +I+ NSEL ++++IFSKLP NL +CRLV W +L+ +CKF+ IS SN
Sbjct: 1 MEKKPKSKIKTTNSELPPDILQLIFSKLPFFNLPTCRLVSATWNNLVLSCKFDPSISISN 60
Query: 61 FLFVH----RSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLV 120
F H R NL VD DP LE MSTVA+F F P +S+G+ +ISI+NSC+G++ +L+
Sbjct: 61 LFFAHFYSCRDRNLHCVDLDPQHLEGMSTVASFTFHPNVSSGSCKISIINSCSGLISLLI 120
Query: 121 KETFRKGGITRGDVWILNPVTNEYLK-PRI-SKADRNRKYRYGLGLNPKTNQYKIARSSR 180
+ R+ G G V +LNP+TNEY K P SK D + Y YGLG +P+T QYK+AR+
Sbjct: 121 TKR-RRRGHRPGVVCVLNPMTNEYFKLPTFRSKGDSVKDYFYGLGFSPRTKQYKLARTHY 180
Query: 181 VLNKLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQENRH-----VIYRM 240
V ++ + + T+CEW + +P F + VYF+GG+Y VG Q+ + VIYR+
Sbjct: 181 VCHEFIVEIFAFGTSCEWTPVGSVPYFLNEYHGVYFNGGLYWVGGQQLPNAGLSDVIYRL 240
Query: 241 DVENERIKKISFP---RDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSW--DVVT 300
D+E+++ K+ISFP D G+F +IG N L++T HV +M +D+SW + V
Sbjct: 241 DLEDDKFKQISFPLDGDDEGDFPYIGVYNDTLYLTLCCGDFEYHVWKMEEDFSWIKEFVL 300
Query: 301 VFSFGSLESLD--------FRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSE 360
SL + +KA EDG L L L L+L+D K+ + DQD E
Sbjct: 301 ALPENVHHSLPRHHPIGYCLQLIKACEDGNILCLCAGLYLILYDPKTETTE-LLTDQDFE 360
Query: 361 LEKMKTFHPVGSISFNSLDKILAGNC 363
++K + + S +FNSL ILAG C
Sbjct: 361 IKKHMWVYQIDSFNFNSLHNILAGKC 384
BLAST of Sed0007116 vs. NCBI nr
Match:
XP_004135796.1 (putative F-box protein At1g46984 [Cucumis sativus] >KGN66126.1 hypothetical protein Csa_007182 [Cucumis sativus])
HSP 1 Score: 253.8 bits (647), Expect = 2.2e-63
Identity = 151/386 (39.12%), Postives = 218/386 (56.48%), Query Frame = 0
Query: 1 MKNKQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSN 60
M+ K I N SEL V+++IFSKLP NL +CRLV W +LIS+CKF+ IS S+
Sbjct: 1 MEKKPKTNIVNKRSELPPDVLQLIFSKLPFFNLPTCRLVSTTWNNLISSCKFDPSISISH 60
Query: 61 FLFVH----RSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLV 120
F R NL V+FDP E MSTVA+F F P+LS+G+ RI+I+NSC+G++ +++
Sbjct: 61 LFFARFYSSRHPNLHCVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINSCSGLISLII 120
Query: 121 KETFRKGGITRGD-VWILNPVTNEYLK--PRISKADRNRKYRYGLGLNPKTNQYKIARSS 180
+ R+G R D V +LNP+TNEY K SK DR Y YGLG +P TNQYK+AR+
Sbjct: 121 NKRRRRG--HRLDLVCVLNPITNEYFKLPTSRSKGDRVPNYCYGLGFSPTTNQYKLARTH 180
Query: 181 RVLNKLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQ--------ENRHV 240
++ + + T+CEW + +P F + VY +GG+Y VG Q + V
Sbjct: 181 FTHDEFIVDIFAFGTSCEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQKLPNGGISDYTEV 240
Query: 241 IYRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTV 300
IYR+D+++E+ +KISFP D G+ +I NG L++T + H +M +D+SW V
Sbjct: 241 IYRLDLKDEKFEKISFPLDGGDDPYIAVYNGTLYLTFCCEDFDYHAWKMEEDFSWSKEFV 300
Query: 301 FSFGSLESLDFR---------FMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSE 360
+ R +K EDG L L+ + L+L+D + + I +QD E
Sbjct: 301 LALPENVHHSLRHHPIGYYLQLIKFCEDGNILCLYAGILLILYDPSTQTVE-ILTNQDFE 360
Query: 361 LEKMKTFHPVGSISFNSLDKILAGNC 363
+++ H + S SFNSL ILAG C
Sbjct: 361 IKEAMWVHQIESFSFNSLHNILAGKC 383
BLAST of Sed0007116 vs. NCBI nr
Match:
XP_008450717.1 (PREDICTED: putative F-box protein At3g21120 [Cucumis melo] >TYK10199.1 putative F-box protein [Cucumis melo var. makuwa])
HSP 1 Score: 241.5 bits (615), Expect = 1.1e-59
Identity = 145/384 (37.76%), Postives = 215/384 (55.99%), Query Frame = 0
Query: 4 KQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSNFLF 63
K I N + EL +++ IFSK+P NL +CRLV + W +LIS+CKF+ S + F
Sbjct: 3 KPKTNIINKSYELPPDILQQIFSKIPFFNLPTCRLVSRTWNNLISSCKFDPSTSIYHLFF 62
Query: 64 VH----RSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKET 123
R NL V+FDP +E MS VA+F F P+ + + RI+I+NSC+G++ +L+ +
Sbjct: 63 ARFYSSRHRNLHCVEFDPQHVEGMSIVASFAFHPDFCSASSRITIINSCSGLISLLITKR 122
Query: 124 FRKGGITRGDVWILNPVTNEYLK-PRIS-KADRNRKYRYGLGLNPKTNQYKIARSSRVLN 183
R+ G R V +LNP+TNEY K P + K D+ Y YGLG +PKTNQYK+AR+ N
Sbjct: 123 -RRRGQRRDVVCVLNPITNEYFKHPNLRLKGDKVPNYCYGLGFSPKTNQYKLARTHFAHN 182
Query: 184 KLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQEN---------RHVIYR 243
+ + + T+CEW I +P F + VYF+GG+Y VG Q+ V+YR
Sbjct: 183 EFIVDIFAFGTSCEWTPIGSVPNFLNEYHGVYFNGGLYWVGSQKQLPNGGLSDYTGVVYR 242
Query: 244 MDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSW--DVVTVF 303
+D+ +E+ KKIS P G+ ++G NG L++T + HV +M++D+SW + V
Sbjct: 243 LDLNDEKFKKISIPFG-GDEPYVGVYNGTLYLTLCCEDFDYHVWKMKEDFSWSKEFVLAL 302
Query: 304 SFGSLESLD--------FRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSELE 363
L SL + +K EDG L L + L+++D K+ + I DQD E++
Sbjct: 303 PENILHSLHRHHPIGYYLQLVKFCEDGSILCLCAGILLIVYDPKTQQME-ILTDQDFEIK 362
BLAST of Sed0007116 vs. NCBI nr
Match:
XP_004134745.1 (F-box protein At3g07870 [Cucumis sativus] >XP_011658168.1 F-box protein At3g07870 [Cucumis sativus] >XP_031743637.1 F-box protein At3g07870 [Cucumis sativus] >KGN49139.1 hypothetical protein Csa_003023 [Cucumis sativus])
HSP 1 Score: 239.6 bits (610), Expect = 4.3e-59
Identity = 154/388 (39.69%), Postives = 219/388 (56.44%), Query Frame = 0
Query: 1 MKNKQNQEIRNI-NSEL-HCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISF 60
M+ K EI+ + NSE +++++I SK+P+ NL SCRLVCK W +LI TCKF+ P F
Sbjct: 1 MEKKWKGEIKKLSNSEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLILTCKFD-PSLF 60
Query: 61 SNFLFVHRSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKE 120
+F + S L VDFDP+ E M+++ +F F P+ ST + ISI+N+CNG+L +L+ +
Sbjct: 61 LSFAYDCPSRTLYCVDFDPMYFEGMNSIGSFTFHPKFSTSDSSISIINACNGLLSLLISK 120
Query: 121 TFRKGGITRGDVWILNPVTNEYLKPRISKADRN----RKYRYGLGLNPKTNQYKIARSSR 180
RK G + ILNP+TNEY K K+ + R Y YGLG NPKT QYKIAR+S
Sbjct: 121 --RKLGSVSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTSF 180
Query: 181 VLNKLGTLVEIW---KTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQENRH-----VI 240
++ TLVEI+ T+ W + FLP + VYF GG+Y V Q + H I
Sbjct: 181 RPDESTTLVEIFTFGSTHQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSISAI 240
Query: 241 YRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTVF 300
YR+D+ENE+++KIS P+ G G +G L++T + + V +M+ ++SW V
Sbjct: 241 YRLDLENEKLEKISCPQYIGGHFFFGVFDGTLYLTVSKNNKY-QVWKMKDNFSWIKAFVI 300
Query: 301 SF-------------GSLESLDFRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQ 360
S + LD +KA EDGK L L L L+L+D K+ I DQ
Sbjct: 301 SRPRNLCHPDHPHQPWGVSQLD--PIKACEDGKILCLLAGLHLILYDPKTKSAE-ILTDQ 360
Query: 361 DSELEKMKTFHPVGSISFNSLDKILAGN 362
++EK H + + +FNSL ILAGN
Sbjct: 361 SVKVEKHLHVHHIDAFNFNSLPSILAGN 381
BLAST of Sed0007116 vs. NCBI nr
Match:
TYK13067.1 (putative F-box protein [Cucumis melo var. makuwa])
HSP 1 Score: 238.0 bits (606), Expect = 1.2e-58
Identity = 152/388 (39.18%), Postives = 216/388 (55.67%), Query Frame = 0
Query: 1 MKNKQNQEIRNI-NSEL-HCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISF 60
M+ K EI+ + NSE +++++I SK+P+ NL SCRLVCK W +L+ TCKF+ P F
Sbjct: 1 MEKKWKGEIKKLSNSEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLVLTCKFD-PSLF 60
Query: 61 SNFLFVHRSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKE 120
+ + S L VDFDP+ E M++V +F F P+ ST + ISI+N+CNG+L +L+ +
Sbjct: 61 ISLAYDCPSRTLYCVDFDPMYSEGMNSVGSFSFHPKFSTSSSSISIINACNGLLSLLISK 120
Query: 121 TFRKGGITRGDVWILNPVTNEYLKPRISKADRN----RKYRYGLGLNPKTNQYKIARSSR 180
RK G + ILNP+TNEY K K+ + R Y YGLG NPK QYKIAR+S
Sbjct: 121 --RKPGSVSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIARTSF 180
Query: 181 VLNKLGTLVEIW---KTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQENRH-----VI 240
++ TLVEI+ T W + FLP + VYF+GG+Y V Q + H I
Sbjct: 181 RPDESTTLVEIFAFGSTYQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSISTI 240
Query: 241 YRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTVF 300
YR+D+ENE ++KIS P+ G G +G L++T + + V +M+ ++SW + F
Sbjct: 241 YRLDIENENLEKISCPQHLGGHFFFGVFDGTLYLTVSKNNKY-QVWKMKDNFSW--IKAF 300
Query: 301 SFGSLESL-------------DFRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQ 360
S +L +KA EDGK L L L L+L+D K+ I DQ
Sbjct: 301 VISSPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKSAE-ILTDQ 360
Query: 361 DSELEKMKTFHPVGSISFNSLDKILAGN 362
++EK H + S +FNSL ILAGN
Sbjct: 361 SVKVEKHLHVHHIDSFNFNSLPNILAGN 381
BLAST of Sed0007116 vs. ExPASy TrEMBL
Match:
A0A0A0M1M5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G572960 PE=4 SV=1)
HSP 1 Score: 253.8 bits (647), Expect = 1.1e-63
Identity = 151/386 (39.12%), Postives = 218/386 (56.48%), Query Frame = 0
Query: 1 MKNKQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSN 60
M+ K I N SEL V+++IFSKLP NL +CRLV W +LIS+CKF+ IS S+
Sbjct: 1 MEKKPKTNIVNKRSELPPDVLQLIFSKLPFFNLPTCRLVSTTWNNLISSCKFDPSISISH 60
Query: 61 FLFVH----RSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLV 120
F R NL V+FDP E MSTVA+F F P+LS+G+ RI+I+NSC+G++ +++
Sbjct: 61 LFFARFYSSRHPNLHCVEFDPQHAEGMSTVASFAFHPDLSSGSCRITIINSCSGLISLII 120
Query: 121 KETFRKGGITRGD-VWILNPVTNEYLK--PRISKADRNRKYRYGLGLNPKTNQYKIARSS 180
+ R+G R D V +LNP+TNEY K SK DR Y YGLG +P TNQYK+AR+
Sbjct: 121 NKRRRRG--HRLDLVCVLNPITNEYFKLPTSRSKGDRVPNYCYGLGFSPTTNQYKLARTH 180
Query: 181 RVLNKLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQ--------ENRHV 240
++ + + T+CEW + +P F + VY +GG+Y VG Q + V
Sbjct: 181 FTHDEFIVDIFAFGTSCEWTPVGSVPNFLNEYHGVYLNGGLYWVGSQKLPNGGISDYTEV 240
Query: 241 IYRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTV 300
IYR+D+++E+ +KISFP D G+ +I NG L++T + H +M +D+SW V
Sbjct: 241 IYRLDLKDEKFEKISFPLDGGDDPYIAVYNGTLYLTFCCEDFDYHAWKMEEDFSWSKEFV 300
Query: 301 FSFGSLESLDFR---------FMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSE 360
+ R +K EDG L L+ + L+L+D + + I +QD E
Sbjct: 301 LALPENVHHSLRHHPIGYYLQLIKFCEDGNILCLYAGILLILYDPSTQTVE-ILTNQDFE 360
Query: 361 LEKMKTFHPVGSISFNSLDKILAGNC 363
+++ H + S SFNSL ILAG C
Sbjct: 361 IKEAMWVHQIESFSFNSLHNILAGKC 383
BLAST of Sed0007116 vs. ExPASy TrEMBL
Match:
A0A5D3CIX9 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003440 PE=4 SV=1)
HSP 1 Score: 241.5 bits (615), Expect = 5.4e-60
Identity = 145/384 (37.76%), Postives = 215/384 (55.99%), Query Frame = 0
Query: 4 KQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSNFLF 63
K I N + EL +++ IFSK+P NL +CRLV + W +LIS+CKF+ S + F
Sbjct: 3 KPKTNIINKSYELPPDILQQIFSKIPFFNLPTCRLVSRTWNNLISSCKFDPSTSIYHLFF 62
Query: 64 VH----RSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKET 123
R NL V+FDP +E MS VA+F F P+ + + RI+I+NSC+G++ +L+ +
Sbjct: 63 ARFYSSRHRNLHCVEFDPQHVEGMSIVASFAFHPDFCSASSRITIINSCSGLISLLITKR 122
Query: 124 FRKGGITRGDVWILNPVTNEYLK-PRIS-KADRNRKYRYGLGLNPKTNQYKIARSSRVLN 183
R+ G R V +LNP+TNEY K P + K D+ Y YGLG +PKTNQYK+AR+ N
Sbjct: 123 -RRRGQRRDVVCVLNPITNEYFKHPNLRLKGDKVPNYCYGLGFSPKTNQYKLARTHFAHN 182
Query: 184 KLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQEN---------RHVIYR 243
+ + + T+CEW I +P F + VYF+GG+Y VG Q+ V+YR
Sbjct: 183 EFIVDIFAFGTSCEWTPIGSVPNFLNEYHGVYFNGGLYWVGSQKQLPNGGLSDYTGVVYR 242
Query: 244 MDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSW--DVVTVF 303
+D+ +E+ KKIS P G+ ++G NG L++T + HV +M++D+SW + V
Sbjct: 243 LDLNDEKFKKISIPFG-GDEPYVGVYNGTLYLTLCCEDFDYHVWKMKEDFSWSKEFVLAL 302
Query: 304 SFGSLESLD--------FRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSELE 363
L SL + +K EDG L L + L+++D K+ + I DQD E++
Sbjct: 303 PENILHSLHRHHPIGYYLQLVKFCEDGSILCLCAGILLIVYDPKTQQME-ILTDQDFEIK 362
BLAST of Sed0007116 vs. ExPASy TrEMBL
Match:
A0A1S3BQV8 (putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103492215 PE=4 SV=1)
HSP 1 Score: 241.5 bits (615), Expect = 5.4e-60
Identity = 145/384 (37.76%), Postives = 215/384 (55.99%), Query Frame = 0
Query: 4 KQNQEIRNINSELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSNFLF 63
K I N + EL +++ IFSK+P NL +CRLV + W +LIS+CKF+ S + F
Sbjct: 3 KPKTNIINKSYELPPDILQQIFSKIPFFNLPTCRLVSRTWNNLISSCKFDPSTSIYHLFF 62
Query: 64 VH----RSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKET 123
R NL V+FDP +E MS VA+F F P+ + + RI+I+NSC+G++ +L+ +
Sbjct: 63 ARFYSSRHRNLHCVEFDPQHVEGMSIVASFAFHPDFCSASSRITIINSCSGLISLLITKR 122
Query: 124 FRKGGITRGDVWILNPVTNEYLK-PRIS-KADRNRKYRYGLGLNPKTNQYKIARSSRVLN 183
R+ G R V +LNP+TNEY K P + K D+ Y YGLG +PKTNQYK+AR+ N
Sbjct: 123 -RRRGQRRDVVCVLNPITNEYFKHPNLRLKGDKVPNYCYGLGFSPKTNQYKLARTHFAHN 182
Query: 184 KLGTLVEIWKTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQEN---------RHVIYR 243
+ + + T+CEW I +P F + VYF+GG+Y VG Q+ V+YR
Sbjct: 183 EFIVDIFAFGTSCEWTPIGSVPNFLNEYHGVYFNGGLYWVGSQKQLPNGGLSDYTGVVYR 242
Query: 244 MDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSW--DVVTVF 303
+D+ +E+ KKIS P G+ ++G NG L++T + HV +M++D+SW + V
Sbjct: 243 LDLNDEKFKKISIPFG-GDEPYVGVYNGTLYLTLCCEDFDYHVWKMKEDFSWSKEFVLAL 302
Query: 304 SFGSLESLD--------FRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQDSELE 363
L SL + +K EDG L L + L+++D K+ + I DQD E++
Sbjct: 303 PENILHSLHRHHPIGYYLQLVKFCEDGSILCLCAGILLIVYDPKTQQME-ILTDQDFEIK 362
BLAST of Sed0007116 vs. ExPASy TrEMBL
Match:
A0A0A0KJY9 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G515480 PE=4 SV=1)
HSP 1 Score: 239.6 bits (610), Expect = 2.1e-59
Identity = 154/388 (39.69%), Postives = 219/388 (56.44%), Query Frame = 0
Query: 1 MKNKQNQEIRNI-NSEL-HCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISF 60
M+ K EI+ + NSE +++++I SK+P+ NL SCRLVCK W +LI TCKF+ P F
Sbjct: 1 MEKKWKGEIKKLSNSEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLILTCKFD-PSLF 60
Query: 61 SNFLFVHRSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKE 120
+F + S L VDFDP+ E M+++ +F F P+ ST + ISI+N+CNG+L +L+ +
Sbjct: 61 LSFAYDCPSRTLYCVDFDPMYFEGMNSIGSFTFHPKFSTSDSSISIINACNGLLSLLISK 120
Query: 121 TFRKGGITRGDVWILNPVTNEYLKPRISKADRN----RKYRYGLGLNPKTNQYKIARSSR 180
RK G + ILNP+TNEY K K+ + R Y YGLG NPKT QYKIAR+S
Sbjct: 121 --RKLGSVSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKTKQYKIARTSF 180
Query: 181 VLNKLGTLVEIW---KTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQENRH-----VI 240
++ TLVEI+ T+ W + FLP + VYF GG+Y V Q + H I
Sbjct: 181 RPDESTTLVEIFTFGSTHQVWTPVGFLPSLVVEDHGVYFKGGLYWVANQPDPHDSSISAI 240
Query: 241 YRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTVF 300
YR+D+ENE+++KIS P+ G G +G L++T + + V +M+ ++SW V
Sbjct: 241 YRLDLENEKLEKISCPQYIGGHFFFGVFDGTLYLTVSKNNKY-QVWKMKDNFSWIKAFVI 300
Query: 301 SF-------------GSLESLDFRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQ 360
S + LD +KA EDGK L L L L+L+D K+ I DQ
Sbjct: 301 SRPRNLCHPDHPHQPWGVSQLD--PIKACEDGKILCLLAGLHLILYDPKTKSAE-ILTDQ 360
Query: 361 DSELEKMKTFHPVGSISFNSLDKILAGN 362
++EK H + + +FNSL ILAGN
Sbjct: 361 SVKVEKHLHVHHIDAFNFNSLPSILAGN 381
BLAST of Sed0007116 vs. ExPASy TrEMBL
Match:
A0A5D3CM94 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006720 PE=4 SV=1)
HSP 1 Score: 238.0 bits (606), Expect = 6.0e-59
Identity = 152/388 (39.18%), Postives = 216/388 (55.67%), Query Frame = 0
Query: 1 MKNKQNQEIRNI-NSEL-HCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISF 60
M+ K EI+ + NSE +++++I SK+P+ NL SCRLVCK W +L+ TCKF+ P F
Sbjct: 1 MEKKWKGEIKKLSNSEFPPDNIIQVILSKVPLFNLTSCRLVCKSWNNLVLTCKFD-PSLF 60
Query: 61 SNFLFVHRSSNLLVVDFDPIRLESMSTVATFKFDPELSTGNRRISIVNSCNGILCVLVKE 120
+ + S L VDFDP+ E M++V +F F P+ ST + ISI+N+CNG+L +L+ +
Sbjct: 61 ISLAYDCPSRTLYCVDFDPMYSEGMNSVGSFSFHPKFSTSSSSISIINACNGLLSLLISK 120
Query: 121 TFRKGGITRGDVWILNPVTNEYLKPRISKADRN----RKYRYGLGLNPKTNQYKIARSSR 180
RK G + ILNP+TNEY K K+ + R Y YGLG NPK QYKIAR+S
Sbjct: 121 --RKPGSVSYVLGILNPMTNEYFKFPAEKSKSHCCCGRLYSYGLGFNPKKKQYKIARTSF 180
Query: 181 VLNKLGTLVEIW---KTNCEWARIKFLPLFFAVCNHVYFDGGIYMVGQQENRH-----VI 240
++ TLVEI+ T W + FLP + VYF+GG+Y V Q + H I
Sbjct: 181 RPDESTTLVEIFAFGSTYQVWTSVGFLPSLVVEDHGVYFNGGLYWVANQPDPHDSSISTI 240
Query: 241 YRMDVENERIKKISFPRDYGEFCHIGEVNGCLFITTLYDRSFLHVQRMRQDYSWDVVTVF 300
YR+D+ENE ++KIS P+ G G +G L++T + + V +M+ ++SW + F
Sbjct: 241 YRLDIENENLEKISCPQHLGGHFFFGVFDGTLYLTVSKNNKY-QVWKMKDNFSW--IKAF 300
Query: 301 SFGSLESL-------------DFRFMKAYEDGKFLFLFKKLDLLLFDYKSMMIRGIWMDQ 360
S +L +KA EDGK L L L L+L+D K+ I DQ
Sbjct: 301 VISSPRNLCHPDHPHQPWGVSQLDPIKACEDGKILCLLAGLHLILYDPKTKSAE-ILTDQ 360
Query: 361 DSELEKMKTFHPVGSISFNSLDKILAGN 362
++EK H + S +FNSL ILAGN
Sbjct: 361 SVKVEKHLHVHHIDSFNFNSLPNILAGN 381
BLAST of Sed0007116 vs. TAIR 10
Match:
AT5G41510.1 (F-box and associated interaction domains-containing protein )
HSP 1 Score: 45.1 bits (105), Expect = 1.4e-04
Identity = 36/115 (31.30%), Postives = 53/115 (46.09%), Query Frame = 0
Query: 14 SELHCSVMEIIFSKLPIINLWSCRLVCKQWKDLISTCKFESPISFSNFLFVHRSSNLLVV 73
S L ++E IFS++P+ ++ + RL CK W +L K ES R ++V
Sbjct: 6 SNLPRDLIEEIFSRVPLTSMKAVRLTCKSWNNL---SKSESFTKVHIGRAATREEKTMIV 65
Query: 74 DFDPIRLESMSTV-------ATFKFDPELSTGNRRISIVNSCNGILCVLVKETFR 122
D P +L MS V A FK L N RI+ V G+L ++K+ R
Sbjct: 66 DVMPHKLNLMSIVIDDVTPSAEFKGQFSLLHKNYRINQVLHYEGLLLCIMKDPTR 117
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038880514.1 | 3.6e-66 | 40.41 | putative F-box protein At1g46984 [Benincasa hispida] | [more] |
XP_004135796.1 | 2.2e-63 | 39.12 | putative F-box protein At1g46984 [Cucumis sativus] >KGN66126.1 hypothetical prot... | [more] |
XP_008450717.1 | 1.1e-59 | 37.76 | PREDICTED: putative F-box protein At3g21120 [Cucumis melo] >TYK10199.1 putative ... | [more] |
XP_004134745.1 | 4.3e-59 | 39.69 | F-box protein At3g07870 [Cucumis sativus] >XP_011658168.1 F-box protein At3g0787... | [more] |
TYK13067.1 | 1.2e-58 | 39.18 | putative F-box protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0M1M5 | 1.1e-63 | 39.12 | F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G572960 PE=4 ... | [more] |
A0A5D3CIX9 | 5.4e-60 | 37.76 | Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1... | [more] |
A0A1S3BQV8 | 5.4e-60 | 37.76 | putative F-box protein At3g21120 OS=Cucumis melo OX=3656 GN=LOC103492215 PE=4 SV... | [more] |
A0A0A0KJY9 | 2.1e-59 | 39.69 | F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G515480 PE=4 ... | [more] |
A0A5D3CM94 | 6.0e-59 | 39.18 | Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... | [more] |
Match Name | E-value | Identity | Description | |
AT5G41510.1 | 1.4e-04 | 31.30 | F-box and associated interaction domains-containing protein | [more] |