Sed0006600.2 (mRNA) Chayote v1

Overview


Name	Sed0006600.2
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1
Location	LG01: 4005240 .. 4009480 (+)
Sequence length	797
RNA-Seq Expression	Sed0006600.2
Synteny	Sed0006600.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCATTTTAAAAAAATATTTCGTAAACTACCCCAAAACCAGACAGAAAGTAGGGTTTTAGCCTTAACCCTCAGCAGCCAAGAAATCGAACTGAAACAGAATCAACTTTCAGGATCCATCATTTCTTCTCGTTAACAATGGCGTCAATCGGTGCAAGGTCTGTTTTCCGGTCACTTTCCGGCTCTGCACGCCGTGCTGCTGCTCAGGTCGGCTCTCAATCCCGGCCGACGCCAAGCTCTCCCTTTCGAATGGCGACTAACAAGCCACTCTCTCATCGGAATTTCAGGTGTGTTGACTAATGCTTGTTCGTCCATGAAAAATGCGAAAAGATTCCGAATCCATAGCTATATTGAATGTATTTGGCTTATGAAGGTGTGCGGCTGAGATGAGTTTCTGTTTAGAGTCGATGATGCCGTTTCACTCTGCGTCATCGGCTGCTTTGATGACTTCAATGCTCTCTATCTCTCGCAGCAGCTGCGGTTGGCTTCCTGAAGGTGCGCTTTACTTATAATTTAGTTCTTAACTTTCTTGATCTGTCATGACCTAGATCGATTGAGTAAAGGATTGTTATAAATTTGTCCGGTTAGGATTTTAGATCCCTTTGATAAATTGCTGGAATTTGATTTTTTCTATTTGCATTAGTTATGGCTATTCGGATCACTTTACGCTCGGAAACTGTAGTAAATTAATTTTGACTCAATAATATTCGGATGTCAAGGAAACCGTGTTCAACATGGATTTAACTTATCATCTTTTAGTTATTTAAGATCCTATTGACCACTTGTTCACTCCGTGATTTTTTGGTTTGATGGTTATTTGCATTTGTTCTTAATTGGATGATTTTCAGGTTAATAATTAGTCTCAAGAATCAAGAAAGAGAGTTTTAGTTTGAGTGTGGTAGTGATCAATTATGTTTAGAAGAAAGTGATACGCATATAAAGTTTATCGTTTGCATTAGCTCCCATTAGCCACATTAACCTGATATTGCTGGAGGACGAAAAGGTCTATGCTACTATTCTTTGATTGAAGTAGCCAATGTCTATGAATCTTTAGGAGCTACAACATTAAAATATTGTAACTTTTGTAGTGTTACGATAGGATTGTAACGTCTCAATGGCGTAGTTTTTTGTAATGTTTTCGATAGGATTGTAACTTTTCATGCATCAATGAAGGTTTTCGTTTCCTATAAAAAAAACAACATTAAAATATTTATTTAGGGGTAATGTTAGTACTGATATAGATTATCATGCCAAGTAAGTTGTAATTATCCGTAAGAATTTCCTGTGTACATGAAGTTGGATGTGCTAACTTTATTATTTTTTATTTTTTATTTTTATGATATCTCTTCATGAGCTATATTTCTTACTAATGACTATTTATGTTTTTTCTCTTCATATAAAACTTGCAAATGTAAAGATTCCTGATCCAACTTCGTAATTTTCTTGATTTTATATTTTGAAAGGAAAAGTGGATCTACTTCTAGGTTGTCTAACTAGTGGATTTCTTACTCTTGAATTAGGTAGCTAGCACACTTTATAGGCCCTTGATGTTCTTCTTGCCTTCTTGTTGCTCTGGTGAGTTGGTGCCTATAAACTTGTATAGGACTGATAAAATTGAACAAAATTATATAATAACATGCATGCACAACAACCTGATTATTTTTCCCCTTGAAGACAGTTTATTACATCAAGTAGCTAATCTTCAAATTAGGACGCAAACAAGCTTAACATTCATTCTCTCTTTCCTTCACCTCCCATGACCAAGTCGGTCCTTTTGCAGAACTCGGGTCTTACTCTTACATACCTTCTCTTTGTTGCTTTTTTATTCTTAATAGATCGAGTCTACTATGAGAAAGCCTTCCGGCTTTATTCAAATTGTTAATTAAAAGAGTACATTCCCCTGTTTTCAATGTAGGCAAAGACAAGACTAGATGAGGATCAAGAAGCAGGAAGGAATAATTTGAGTTGCTTTTTGAGTTTCACCTATTAAGTCCTAGGCAATCCGTAATCCTCTTGCCCCGCCCCCAGACCAAAAAAAAAACTTCTAGGCGATTTCTTTATCAAGTATTTGGTACTGTCGATTTGTTATTTTCCCCATTCCACTACTTCATAAAGATGGGGTTGCAAATTTAGCAATATATTATTCTGACCATCAAGTACCATGCGAAAGAGTCTGAAGTAGGCTAAATCATGAATCAGTTGTTTAATTAAAATAGGGTTATCTTATTTATCAGTCTTGAGATCTTGAAGTCAAGAAATAGTTGTTATTGACCGATCACCAAACATAAGGAGTTAGTTCAGTTTTAGATAAACTCGCCTATTTTTCCTTTTTCAATCTAATTCAAGGATGATGTATTAAAAACGAATATCTTGTTTGATTTTTTTTAAAAAAAAATTAAACTTGTCTTTCTCATTTTTTTCGACATCTGAATTCTTAGCCAAATTCCTAAAACAAAAACTACTTGAAAACTACTTTTCAGTTTTCCAAACATTACAGACTTGATTTTTTAATACATAGGTGAAAGTTCAAGGAAAAAAAAACCTCTTTTACTTTCTCTCTCTAGTAAACTGTCTTGAAGGAAAAAGCCCTAGGAAACTCTCGAGACTCTCTCTCCTCCTTCTCTAGAGCCAACAATGTGCAACATTTTTCCTCCATTTTGACGCCTTCTTGTCAGGCGTCGATGTGTTTCCTCCACTCTTCTTTTTCACTTAAATATTTCTCGTTTTTTCCTAATGCAACATCTAACGTTGATATCCTCTCAGTCATTTCTCACTTTTTTGGCACCAACAAACATCTTCCTCCACAAACCTGACTACAATCTTTTCCTTCTCTATTTTTTGATCTATGTCATTAACGATGTACCTCCTTATCATGTGCTTCACTACCGATATTCCATGTATCTGTCAATCGTCAGGCATCGTCACCTTTTCTCCTCCAGTGTCTTTCAAAACCAATCGTTGGTGAGTTTTTCCTCATCACAAATTCCTCGAGTGACTGCTACTCATTGCTTTCGGACCTCTACTGATCACCAAGCCTATGCTGATACATATCGGCTATTGCAATGCTTTATCTCCTCCAAGCAATGACGGCCTCGATTTGCATTTTCACTGTTGAGCACGAGAACATGAATTTCTTCAACCACAAGAGCGCGGGACACAGTATCGTTGGTGAGCCCACAAATAATTGAGCCTATTTCCTTCAACAACAAACACACTTTACTCATCTTCATCTGCGTTATTTGGCTTCGTCATCGCCACAGACATTTAGTTGCCTCTGTATTTGTCTGTCTTTTTAGACCCAGCTTCATTTTTCTTTGATTCATAGTTCTTTGTAATAGTTTCACATATTAAGGGAAGTTTTGTTTCCTACAAAAAAAAACATAGGTTAATCTATAAACCATCAATTGACCTAGCGTAAAAGGGGGCCGTAGGAAACCTAAAGGTTATTGGTTCAATCTATGGTGGCCATCTACTTAGAAATTAATTTCTTACGAATTTTCTTGACTTTCAAATGTTGCAGGGTTAAGGTTAGGGCTGACTTAGTCACTCATAAATACTTAAAAAAAAAACAATGAAATTTATGGGCAGAAGTAGTATTCTTAGACTTGTGGATACTAAACAGGACCTAAAGTTTTTACTTTTAGCATGCTTCTATCTTACATGAATGTTGTAGTTTCCCTGACCCAAAATTTGGTCCAAGCTTTCCTCCTCTTAAGTTTAGGCTTGGAAAATGCCAATAATCAATTGCATATCTGTTTGATGAGAGCATGCTGATCATCTCCCTGATTGTTTCTTGATTTGACTGGAAGATCAAACTAACATTATTAACACACTGATCACCTGTGTTCATCAGCATGCAATGATGATCTGTGATAAATGACAAAAGGATCTGAGGAAGTTCTCTACCCAACCCTCCATTTTAACTTAAAGTTTCCAAGCTTCAATCGGTGGTTATCGAAGAAGAGATTTCAATTTATGGCAACGGTTGATTGTTATGTGAAGACTGGTCCAAATTTGTAATGCTCAATAAGTTCACGATAAACTTGATGTTCTGTTCTATGTAGTAAAAATTAATTGTTGACGTTTATATGATCATGCATATGAACGCTTCTGTAGAATGATCATCGAGCAATTGATAGTCTCGCTAGTAAAAAACCCAAGTACAAAATTATGGAATCAAACAGCGCACTTTCTTTTATCTTTTGCTACCATGTTGGTTATGAATGAATCATAGTATTGCCA

mRNA sequence

CTCCATTTTAAAAAAATATTTCGTAAACTACCCCAAAACCAGACAGAAAGTAGGGTTTTAGCCTTAACCCTCAGCAGCCAAGAAATCGAACTGAAACAGAATCAACTTTCAGGATCCATCATTTCTTCTCGTTAACAATGGCGTCAATCGGTGCAAGGTCTGTTTTCCGGTCACTTTCCGGCTCTGCACGCCGTGCTGCTGCTCAGGTCGGCTCTCAATCCCGGCCGACGCCAAGCTCTCCCTTTCGAATGGCGACTAACAAGCCACTCTCTCATCGGAATTTCAGGTGTGCGGCTGAGATGAGTTTCTGTTTAGAGTCGATGATGCCGTTTCACTCTGCGTCATCGGCTGCTTTGATGACTTCAATGCTCTCTATCTCTCGCAGCAGCTGCGGTTGGCTTCCTGAAGCATGCAATGATGATCTGTGATAAATGACAAAAGGATCTGAGGAAGTTCTCTACCCAACCCTCCATTTTAACTTAAAGTTTCCAAGCTTCAATCGGTGGTTATCGAAGAAGAGATTTCAATTTATGGCAACGGTTGATTGTTATGTGAAGACTGGTCCAAATTTGTAATGCTCAATAAGTTCACGATAAACTTGATGTTCTGTTCTATGTAGTAAAAATTAATTGTTGACGTTTATATGATCATGCATATGAACGCTTCTGTAGAATGATCATCGAGCAATTGATAGTCTCGCTAGTAAAAAACCCAAGTACAAAATTATGGAATCAAACAGCGCACTTTCTTTTATCTTTTGCTACCATGTTGGTTATGAATGAATCATAGTATTGCCA

Coding sequence (CDS)

ATGGCGTCAATCGGTGCAAGGTCTGTTTTCCGGTCACTTTCCGGCTCTGCACGCCGTGCTGCTGCTCAGGTCGGCTCTCAATCCCGGCCGACGCCAAGCTCTCCCTTTCGAATGGCGACTAACAAGCCACTCTCTCATCGGAATTTCAGGTGTGCGGCTGAGATGAGTTTCTGTTTAGAGTCGATGATGCCGTTTCACTCTGCGTCATCGGCTGCTTTGATGACTTCAATGCTCTCTATCTCTCGCAGCAGCTGCGGTTGGCTTCCTGAAGCATGCAATGATGATCTGTGA

Protein sequence

MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLESMMPFHSASSAALMTSMLSISRSSCGWLPEACNDDL

Homology

[Close]

BLAST of Sed0006600.2 vs. NCBI nr
Match: XP_023512421.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.8 bits (421), Expect = 9.3e-38
Identity = 85/96 (88.54%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAQ+GSQ++ + S+PFRMAT KPLSHRNFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRNFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEACNDDL 97
          SMMPFHSASS+ALMTSMLS+SRSSCGWLPEACNDDL
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEACNDDL 96

[Close]

BLAST of Sed0006600.2 vs. NCBI nr
Match: KAG6570920.1 (Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164.5 bits (415), Expect = 4.6e-37
Identity = 84/96 (87.50%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAQ+GSQ++ + S+PFRMAT KPLSHR FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEACNDDL 97
          SMMPFHSASS+ALMTSMLS+SRSSCGWLPEACNDDL
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEACNDDL 96

[Close]

BLAST of Sed0006600.2 vs. NCBI nr
Match: XP_022986408.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 163.7 bits (413), Expect = 7.9e-37
Identity = 84/96 (87.50%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAQ+GSQ++ + S+PFRMAT KPLSHR FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKLSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEACNDDL 97
          SMMPFHSASS+ALMTSMLS+SRSSCGWLPEACNDDL
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEACNDDL 96

[Close]

BLAST of Sed0006600.2 vs. NCBI nr
Match: XP_011649973.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 83/95 (87.37%), Postives = 87/95 (91.58%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MASIGARS FRS SGSARRAAA +GSQ +P+PSSPFRMATNKPLSHR FRCA EMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEACNDD 96
          SMMPFHS SS+ALMTSMLSISR SCGWLPEACNDD
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEACNDD 95

[Close]

BLAST of Sed0006600.2 vs. NCBI nr
Match: XP_022943542.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 162.5 bits (410), Expect = 1.8e-36
Identity = 83/96 (86.46%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAQ+GSQ++ + S+PFRMAT KPLSHR FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEACNDDL 97
          SMMPFHSASS+ALMTSMLS+SRS CGWLPEACNDDL
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEACNDDL 96

[Close]

BLAST of Sed0006600.2 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.7e-11
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 5   GARSVFRSLSGSARRAAAQVGSQSRPTPSSP--FRMATNKPLSHRNFRCAAEMSFCLESM 64
           GARS+ R  + S+R AAA  G  +    S+P  FR    +       R   E+SFC+ES+
Sbjct: 9   GARSMLR--AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65  MPFHSASSAALMTSMLSISRSSCGWLPEACNDDL 97
           +P+HSA+++ALMTS LSIS  + GWL +ACNDD+
Sbjct: 69  LPYHSATASALMTSKLSISGQTYGWLSDACNDDV 100

[Close]

BLAST of Sed0006600.2 vs. ExPASy TrEMBL
Match: A0A6J1JGE8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484153 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.8e-37
Identity = 84/96 (87.50%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAQ+GSQ++ + S+PFRMAT KPLSHR FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKLSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEACNDDL 97
          SMMPFHSASS+ALMTSMLS+SRSSCGWLPEACNDDL
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEACNDDL 96

[Close]

BLAST of Sed0006600.2 vs. ExPASy TrEMBL
Match: A0A6J1FTB0 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448284 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 8.5e-37
Identity = 83/96 (86.46%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAQ+GSQ++ + S+PFRMAT KPLSHR FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEACNDDL 97
          SMMPFHSASS+ALMTSMLS+SRS CGWLPEACNDDL
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEACNDDL 96

[Close]

BLAST of Sed0006600.2 vs. ExPASy TrEMBL
Match: A0A6J1CHV9 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011321 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.2e-36
Identity = 84/96 (87.50%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MAS+GARSVFRS SGSARRAAA +GS++R + SSPFRMATNKPLSHR FRCAAEMSFCLE
Sbjct: 1  MASLGARSVFRSFSGSARRAAAHIGSEARAS-SSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEACNDDL 97
          SMMPFHSASS+ALMTSMLSISR+SCGWLPEACNDDL
Sbjct: 61 SMMPFHSASSSALMTSMLSISRNSCGWLPEACNDDL 95

[Close]

BLAST of Sed0006600.2 vs. ExPASy TrEMBL
Match: A0A0A0LMP1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408410 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.2e-35
Identity = 82/96 (85.42%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MASIGARS FRS SGSARRAAA +GSQ + + SSPFRMATNKPLSHR FRCA EMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEACNDDL 97
          SMMPFHS SS+ALMTSMLSISR SCGWLPEACNDDL
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEACNDDL 96

[Close]

BLAST of Sed0006600.2 vs. ExPASy TrEMBL
Match: A0A1S4E1L9 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496017 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.9e-34
Identity = 79/95 (83.16%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MASIGARS FRS SGSARRAAA +GSQ +P+ +SPFRMATNKPLSH  FRCA  MSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEACNDD 96
          SMMPFHS SS+ALMTSMLSISR SCGWLPEACNDD
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEACNDD 95

[Close]

BLAST of Sed0006600.2 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-14
Identity = 43/94 (45.74%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 6  ARSVFRSLSGSARRAAAQVGSQSRPTPSS---PFRMATNKPLSHRNFRCAAEMSFCLESM 65
          ARSVFRS +  A   A +  +  +P PSS    FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSAALMTSMLSISRSSCGWLPEACNDDL 97
          +P+H+A+++AL+ SMLS+SR   GW+ + CNDD+
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDDCNDDV 95

[Close]

BLAST of Sed0006600.2 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 )

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-12
Identity = 43/94 (45.74%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 5   GARSVFRSLSGSARRAAAQVGSQSRPTPSSP--FRMATNKPLSHRNFRCAAEMSFCLESM 64
           GARS+ R  + S+R AAA  G  +    S+P  FR    +       R   E+SFC+ES+
Sbjct: 9   GARSMLR--AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65  MPFHSASSAALMTSMLSISRSSCGWLPEACNDDL 97
           +P+HSA+++ALMTS LSIS  + GWL +ACNDD+
Sbjct: 69  LPYHSATASALMTSKLSISGQTYGWLSDACNDDV 100

[Close]

BLAST of Sed0006600.2 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 6  ARSVFRSLSGSARRAAAQVGSQSRPTPSS---PFRMATNKPLSHRNFRCAAEMSFCLESM 65
          ARSVFRS +  A   A +  +  +P PSS    FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSAALMTSMLSISRSSCGWLPEACND 95
          +P+H+A+++AL+ SMLS+SR   GW+ +  ++
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDGLDE 93

[Close]

BLAST of Sed0006600.2 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 6  ARSVFRSLSGSARRAAAQVGSQSRPTPSS---PFRMATNKPLSHRNFRCAAEMSFCLESM 65
          ARSVFRS +  A   A +  +  +P PSS    FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSAALMTSMLSISRSSCGWLPEACND 95
          +P+H+A+++AL+ SMLS+SR   GW+ +  ++
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDGLDE 93

[Close]

BLAST of Sed0006600.2 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 6  ARSVFRSLSGSARRAAAQVGSQSRPTPSS---PFRMATNKPLSHRNFRCAAEMSFCLESM 65
          ARSVFRS +  A   A +  +  +P PSS    FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSAALMTSMLSISRSSCGWLPEACND 95
          +P+H+A+++AL+ SMLS+SR   GW+ +  ++
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDGLDE 93

The following BLAST results are available for this feature:

BLAST of Sed0006600.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512421.1	9.3e-38	88.54	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
KAG6570920.1	4.6e-37	87.50	Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial, partial [Cucurb...	[more]
XP_022986408.1	7.9e-37	87.50	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
XP_011649973.1	1.0e-36	87.37	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucu...	[more]
XP_022943542.1	1.8e-36	86.46	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]

BLAST of Sed0006600.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZJ3	2.7e-11	45.74	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Sed0006600.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JGE8	3.8e-37	87.50	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
A0A6J1FTB0	8.5e-37	86.46	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
A0A6J1CHV9	4.2e-36	87.50	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
A0A0A0LMP1	1.2e-35	85.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408410 PE=4 SV=1	[more]
A0A1S4E1L9	3.9e-34	83.16	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]

BLAST of Sed0006600.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G28395.4	1.5e-14	45.74	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G20585.1	1.9e-12	45.74	nuclear fusion defective 6	[more]
AT1G28395.2	1.2e-11	42.39	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.1	1.2e-11	42.39	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.3	1.2e-11	42.39	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..41
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 3..90
IPR033251	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial	PANTHER	PTHR33156:SF48	PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 3..90

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0006600	Sed0006600	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006600.2-five_prime_utr	Sed0006600.2-five_prime_utr-LG01:4005240..4005376	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006600.2-exon	Sed0006600.2-exon-LG01:4005240..4005525	exon
Sed0006600.2-exon	Sed0006600.2-exon-LG01:4005612..4005733	exon
Sed0006600.2-exon	Sed0006600.2-exon-LG01:4009092..4009480	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006600.2-cds	Sed0006600.2-cds-LG01:4005377..4005525	CDS
Sed0006600.2-cds	Sed0006600.2-cds-LG01:4005612..4005733	CDS
Sed0006600.2-cds	Sed0006600.2-cds-LG01:4009092..4009111	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0006600.2-three_prime_utr	Sed0006600.2-three_prime_utr-LG01:4009112..4009480	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0006600.2	Sed0006600.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000741	karyogamy