Sed0006600 (gene) Chayote v1

Overview


Name	Sed0006600
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1
Location	LG01: 4005240 .. 4009480 (+)
RNA-Seq Expression	Sed0006600
Synteny	Sed0006600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCATTTTAAAAAAATATTTCGTAAACTACCCCAAAACCAGACAGAAAGTAGGGTTTTAGCCTTAACCCTCAGCAGCCAAGAAATCGAACTGAAACAGAATCAACTTTCAGGATCCATCATTTCTTCTCGTTAACAATGGCGTCAATCGGTGCAAGGTCTGTTTTCCGGTCACTTTCCGGCTCTGCACGCCGTGCTGCTGCTCAGGTCGGCTCTCAATCCCGGCCGACGCCAAGCTCTCCCTTTCGAATGGCGACTAACAAGCCACTCTCTCATCGGAATTTCAGGTGTGTTGACTAATGCTTGTTCGTCCATGAAAAATGCGAAAAGATTCCGAATCCATAGCTATATTGAATGTATTTGGCTTATGAAGGTGTGCGGCTGAGATGAGTTTCTGTTTAGAGTCGATGATGCCGTTTCACTCTGCGTCATCGGCTGCTTTGATGACTTCAATGCTCTCTATCTCTCGCAGCAGCTGCGGTTGGCTTCCTGAAGGTGCGCTTTACTTATAATTTAGTTCTTAACTTTCTTGATCTGTCATGACCTAGATCGATTGAGTAAAGGATTGTTATAAATTTGTCCGGTTAGGATTTTAGATCCCTTTGATAAATTGCTGGAATTTGATTTTTTCTATTTGCATTAGTTATGGCTATTCGGATCACTTTACGCTCGGAAACTGTAGTAAATTAATTTTGACTCAATAATATTCGGATGTCAAGGAAACCGTGTTCAACATGGATTTAACTTATCATCTTTTAGTTATTTAAGATCCTATTGACCACTTGTTCACTCCGTGATTTTTTGGTTTGATGGTTATTTGCATTTGTTCTTAATTGGATGATTTTCAGGTTAATAATTAGTCTCAAGAATCAAGAAAGAGAGTTTTAGTTTGAGTGTGGTAGTGATCAATTATGTTTAGAAGAAAGTGATACGCATATAAAGTTTATCGTTTGCATTAGCTCCCATTAGCCACATTAACCTGATATTGCTGGAGGACGAAAAGGTCTATGCTACTATTCTTTGATTGAAGTAGCCAATGTCTATGAATCTTTAGGAGCTACAACATTAAAATATTGTAACTTTTGTAGTGTTACGATAGGATTGTAACGTCTCAATGGCGTAGTTTTTTGTAATGTTTTCGATAGGATTGTAACTTTTCATGCATCAATGAAGGTTTTCGTTTCCTATAAAAAAAACAACATTAAAATATTTATTTAGGGGTAATGTTAGTACTGATATAGATTATCATGCCAAGTAAGTTGTAATTATCCGTAAGAATTTCCTGTGTACATGAAGTTGGATGTGCTAACTTTATTATTTTTTATTTTTTATTTTTATGATATCTCTTCATGAGCTATATTTCTTACTAATGACTATTTATGTTTTTTCTCTTCATATAAAACTTGCAAATGTAAAGATTCCTGATCCAACTTCGTAATTTTCTTGATTTTATATTTTGAAAGGAAAAGTGGATCTACTTCTAGGTTGTCTAACTAGTGGATTTCTTACTCTTGAATTAGGTAGCTAGCACACTTTATAGGCCCTTGATGTTCTTCTTGCCTTCTTGTTGCTCTGGTGAGTTGGTGCCTATAAACTTGTATAGGACTGATAAAATTGAACAAAATTATATAATAACATGCATGCACAACAACCTGATTATTTTTCCCCTTGAAGACAGTTTATTACATCAAGTAGCTAATCTTCAAATTAGGACGCAAACAAGCTTAACATTCATTCTCTCTTTCCTTCACCTCCCATGACCAAGTCGGTCCTTTTGCAGAACTCGGGTCTTACTCTTACATACCTTCTCTTTGTTGCTTTTTTATTCTTAATAGATCGAGTCTACTATGAGAAAGCCTTCCGGCTTTATTCAAATTGTTAATTAAAAGAGTACATTCCCCTGTTTTCAATGTAGGCAAAGACAAGACTAGATGAGGATCAAGAAGCAGGAAGGAATAATTTGAGTTGCTTTTTGAGTTTCACCTATTAAGTCCTAGGCAATCCGTAATCCTCTTGCCCCGCCCCCAGACCAAAAAAAAAACTTCTAGGCGATTTCTTTATCAAGTATTTGGTACTGTCGATTTGTTATTTTCCCCATTCCACTACTTCATAAAGATGGGGTTGCAAATTTAGCAATATATTATTCTGACCATCAAGTACCATGCGAAAGAGTCTGAAGTAGGCTAAATCATGAATCAGTTGTTTAATTAAAATAGGGTTATCTTATTTATCAGTCTTGAGATCTTGAAGTCAAGAAATAGTTGTTATTGACCGATCACCAAACATAAGGAGTTAGTTCAGTTTTAGATAAACTCGCCTATTTTTCCTTTTTCAATCTAATTCAAGGATGATGTATTAAAAACGAATATCTTGTTTGATTTTTTTTAAAAAAAAATTAAACTTGTCTTTCTCATTTTTTTCGACATCTGAATTCTTAGCCAAATTCCTAAAACAAAAACTACTTGAAAACTACTTTTCAGTTTTCCAAACATTACAGACTTGATTTTTTAATACATAGGTGAAAGTTCAAGGAAAAAAAAACCTCTTTTACTTTCTCTCTCTAGTAAACTGTCTTGAAGGAAAAAGCCCTAGGAAACTCTCGAGACTCTCTCTCCTCCTTCTCTAGAGCCAACAATGTGCAACATTTTTCCTCCATTTTGACGCCTTCTTGTCAGGCGTCGATGTGTTTCCTCCACTCTTCTTTTTCACTTAAATATTTCTCGTTTTTTCCTAATGCAACATCTAACGTTGATATCCTCTCAGTCATTTCTCACTTTTTTGGCACCAACAAACATCTTCCTCCACAAACCTGACTACAATCTTTTCCTTCTCTATTTTTTGATCTATGTCATTAACGATGTACCTCCTTATCATGTGCTTCACTACCGATATTCCATGTATCTGTCAATCGTCAGGCATCGTCACCTTTTCTCCTCCAGTGTCTTTCAAAACCAATCGTTGGTGAG

mRNA sequence

CTCCATTTTAAAAAAATATTTCGTAAACTACCCCAAAACCAGACAGAAAGTAGGGTTTTAGCCTTAACCCTCAGCAGCCAAGAAATCGAACTGAAACAGAATCAACTTTCAGGATCCATCATTTCTTCTCGTTAACAATGGCGTCAATCGGTGCAAGGTCTGTTTTCCGGTCACTTTCCGGCTCTGCACGCCGTGCTGCTGCTCAGGTCGGCTCTCAATCCCGGCCGACGCCAAGCTCTCCCTTTCGAATGGCGACTAACAAGCCACTCTCTCATCGGAATTTCAGGTGTGCGGCTGAGATGAGTTTCTGTTTAGAGTCGATGATGCCGTTTCACTCTGCGTCATCGGCTGCTTTGATGACTTCAATGCTCTCTATCTCTCGCAGCAGCTGCGGTTGGCTTCCTGAAGGCAAAGACAAGACTAGATGAGGATCAAGAAGCAGGAAGGAATAATTTGAGTTGCTTTTTGAGTTTCACCTATTAAGTCCTAGGCAATCCGTAATCCTCTTGCCCCGCCCCCAGACCAAAAAAAAAACTTCTAGGCGATTTCTTTATCAAGTATTTGGTACTGTCGATTTGTTATTTTCCCCATTCCACTACTTCATAAAGATGGGGTTGCAAATTTAGCAATATATTATTCTGACCATCAAGTACCATGCGAAAGAGTCTGAAGTAGGCTAAATCATGAATCAGTTGTTTAATTAAAATAGGGTTATCTTATTTATCAGTCTTGAGATCTTGAAGTCAAGAAATAGTTGTTATTGACCGATCACCAAACATAAGGAGTTAGTTCAGTTTTAGATAAACTCGCCTATTTTTCCTTTTTCAATCTAATTCAAGGATGATGTATTAAAAACGAATATCTTGTTTGATTTTTTTTAAAAAAAAATTAAACTTGTCTTTCTCATTTTTTTCGACATCTGAATTCTTAGCCAAATTCCTAAAACAAAAACTACTTGAAAACTACTTTTCAGTTTTCCAAACATTACAGACTTGATTTTTTAATACATAGGTGAAAGTTCAAGGAAAAAAAAACCTCTTTTACTTTCTCTCTCTAGTAAACTGTCTTGAAGGAAAAAGCCCTAGGAAACTCTCGAGACTCTCTCTCCTCCTTCTCTAGAGCCAACAATGTGCAACATTTTTCCTCCATTTTGACGCCTTCTTGTCAGGCGTCGATGTGTTTCCTCCACTCTTCTTTTTCACTTAAATATTTCTCGTTTTTTCCTAATGCAACATCTAACGTTGATATCCTCTCAGTCATTTCTCACTTTTTTGGCACCAACAAACATCTTCCTCCACAAACCTGACTACAATCTTTTCCTTCTCTATTTTTTGATCTATGTCATTAACGATGTACCTCCTTATCATGTGCTTCACTACCGATATTCCATGTATCTGTCAATCGTCAGGCATCGTCACCTTTTCTCCTCCAGTGTCTTTCAAAACCAATCGTTGGTGAG

Coding sequence (CDS)

ATGGCGTCAATCGGTGCAAGGTCTGTTTTCCGGTCACTTTCCGGCTCTGCACGCCGTGCTGCTGCTCAGGTCGGCTCTCAATCCCGGCCGACGCCAAGCTCTCCCTTTCGAATGGCGACTAACAAGCCACTCTCTCATCGGAATTTCAGGTGTGCGGCTGAGATGAGTTTCTGTTTAGAGTCGATGATGCCGTTTCACTCTGCGTCATCGGCTGCTTTGATGACTTCAATGCTCTCTATCTCTCGCAGCAGCTGCGGTTGGCTTCCTGAAGGCAAAGACAAGACTAGATGA

Protein sequence

MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLESMMPFHSASSAALMTSMLSISRSSCGWLPEGKDKTR

Homology

[Close]

BLAST of Sed0006600 vs. NCBI nr
Match: XP_023512420.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37
Identity = 85/96 (88.54%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAQ+GSQ++ + S+PFRMAT KPLSHRNFRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRNFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEGKDKTR 97
          SMMPFHSASS+ALMTSMLS+SRSSCGWLPEGKDKTR
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEGKDKTR 96

[Close]

BLAST of Sed0006600 vs. NCBI nr
Match: XP_011649972.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37
Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MASIGARS FRS SGSARRAAA +GSQ +P+PSSPFRMATNKPLSHR FRCA EMSFCLE
Sbjct: 1  MASIGARSAFRSFSGSARRAAAHIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEGKDKTR 97
          SMMPFHS SS+ALMTSMLSISR SCGWLPEGKDKTR
Sbjct: 61 SMMPFHSVSSSALMTSMLSISRHSCGWLPEGKDKTR 96

[Close]

BLAST of Sed0006600 vs. NCBI nr
Match: XP_022986407.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 162.9 bits (411), Expect = 1.3e-36
Identity = 84/96 (87.50%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAQ+GSQ++ + S+PFRMAT KPLSHR FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKLSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEGKDKTR 97
          SMMPFHSASS+ALMTSMLS+SRSSCGWLPEGKDKTR
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEGKDKTR 96

[Close]

BLAST of Sed0006600 vs. NCBI nr
Match: XP_022947067.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 162.2 bits (409), Expect = 2.3e-36
Identity = 85/96 (88.54%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MASIGARSVFRSLSGSARRAAA +GSQ+R +  SPFRMATNKPLSHR FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEGKDKTR 97
          S+MPFHSASSAALM SMLSISR SCGWLPEGKDKTR
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEGKDKTR 96

[Close]

BLAST of Sed0006600 vs. NCBI nr
Match: XP_022943541.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 161.8 bits (408), Expect = 3.0e-36
Identity = 83/96 (86.46%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAQ+GSQ++ + S+PFRMAT KPLSHR FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEGKDKTR 97
          SMMPFHSASS+ALMTSMLS+SRS CGWLPEGKDKTR
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEGKDKTR 96

[Close]

BLAST of Sed0006600 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07
Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 5  GARSVFRSLSGSARRAAAQVGSQSRPTPSSP--FRMATNKPLSHRNFRCAAEMSFCLESM 64
          GARS+ R  + S+R AAA  G  +    S+P  FR    +       R   E+SFC+ES+
Sbjct: 9  GARSMLR--AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESL 68

Query: 65 MPFHSASSAALMTSMLSISRSSCGWLPE 91
          +P+HSA+++ALMTS LSIS  + GWL +
Sbjct: 69 LPYHSATASALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of Sed0006600 vs. ExPASy TrEMBL
Match: A0A6J1J7G1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484153 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 6.5e-37
Identity = 84/96 (87.50%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAQ+GSQ++ + S+PFRMAT KPLSHR FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKLSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEGKDKTR 97
          SMMPFHSASS+ALMTSMLS+SRSSCGWLPEGKDKTR
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSSCGWLPEGKDKTR 96

[Close]

BLAST of Sed0006600 vs. ExPASy TrEMBL
Match: A0A6J1G5E8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451052 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.1e-36
Identity = 85/96 (88.54%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MASIGARSVFRSLSGSARRAAA +GSQ+R +  SPFRMATNKPLSHR FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSLSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEGKDKTR 97
          S+MPFHSASSAALM SMLSISR SCGWLPEGKDKTR
Sbjct: 61 SIMPFHSASSAALMISMLSISRRSCGWLPEGKDKTR 96

[Close]

BLAST of Sed0006600 vs. ExPASy TrEMBL
Match: A0A6J1FS03 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448284 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.5e-36
Identity = 83/96 (86.46%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAAQ+GSQ++ + S+PFRMAT KPLSHR FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEGKDKTR 97
          SMMPFHSASS+ALMTSMLS+SRS CGWLPEGKDKTR
Sbjct: 61 SMMPFHSASSSALMTSMLSVSRSCCGWLPEGKDKTR 96

[Close]

BLAST of Sed0006600 vs. ExPASy TrEMBL
Match: A0A6J1I2H5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469903 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 7.2e-36
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MASIGARSVFRS SGSARRAAA +GSQ+R +  SPFRMATNKPLSHR FRCAAEMSFCLE
Sbjct: 1  MASIGARSVFRSFSGSARRAAAHIGSQARSSSGSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEGKDKTR 97
          S+MPFHSASSAA+M SMLSISR SCGWLPEGKDKTR
Sbjct: 61 SIMPFHSASSAAVMISMLSISRRSCGWLPEGKDKTR 96

[Close]

BLAST of Sed0006600 vs. ExPASy TrEMBL
Match: A0A6J1CGX5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011321 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 7.2e-36
Identity = 84/96 (87.50%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MASIGARSVFRSLSGSARRAAAQVGSQSRPTPSSPFRMATNKPLSHRNFRCAAEMSFCLE 60
          MAS+GARSVFRS SGSARRAAA +GS++R + SSPFRMATNKPLSHR FRCAAEMSFCLE
Sbjct: 1  MASLGARSVFRSFSGSARRAAAHIGSEARAS-SSPFRMATNKPLSHRTFRCAAEMSFCLE 60

Query: 61 SMMPFHSASSAALMTSMLSISRSSCGWLPEGKDKTR 97
          SMMPFHSASS+ALMTSMLSISR+SCGWLPEGKDKTR
Sbjct: 61 SMMPFHSASSSALMTSMLSISRNSCGWLPEGKDKTR 95

[Close]

BLAST of Sed0006600 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 5.9e-14
Identity = 43/94 (45.74%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 6  ARSVFRSLSGSARRAAAQVGSQSRPTPSS---PFRMATNKPLSHRNFRCAAEMSFCLESM 65
          ARSVFRS +  A   A +  +  +P PSS    FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSAALMTSMLSISRSSCGWLPEGKDKTR 97
          +P+H+A+++AL+ SMLS+SR   GW+ +G D+TR
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDGLDETR 95

[Close]

BLAST of Sed0006600 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 5.9e-14
Identity = 43/94 (45.74%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 6  ARSVFRSLSGSARRAAAQVGSQSRPTPSS---PFRMATNKPLSHRNFRCAAEMSFCLESM 65
          ARSVFRS +  A   A +  +  +P PSS    FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSAALMTSMLSISRSSCGWLPEGKDKTR 97
          +P+H+A+++AL+ SMLS+SR   GW+ +G D+TR
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDGLDETR 95

[Close]

BLAST of Sed0006600 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 5.9e-14
Identity = 43/94 (45.74%), Postives = 63/94 (67.02%), Query Frame = 0


Query: 6  ARSVFRSLSGSARRAAAQVGSQSRPTPSS---PFRMATNKPLSHRNFRCAAEMSFCLESM 65
          ARSVFRS +  A   A +  +  +P PSS    FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSAALMTSMLSISRSSCGWLPEGKDKTR 97
          +P+H+A+++AL+ SMLS+SR   GW+ +G D+TR
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWIVDGLDETR 95

[Close]

BLAST of Sed0006600 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-11
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 6  ARSVFRSLSGSARRAAAQVGSQSRPTPSS---PFRMATNKPLSHRNFRCAAEMSFCLESM 65
          ARSVFRS +  A   A +  +  +P PSS    FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSAALMTSMLSISRSSCGWL 89
          +P+H+A+++AL+ SMLS+SR   GW+
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWI 87

[Close]

BLAST of Sed0006600 vs. TAIR 10
Match: AT1G28395.5 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1). )

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-11
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 0


Query: 6  ARSVFRSLSGSARRAAAQVGSQSRPTPSS---PFRMATNKPLSHRNFRCAAEMSFCLESM 65
          ARSVFRS +  A   A +  +  +P PSS    FRM    PL++R FR   E+S C+E+M
Sbjct: 4  ARSVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETM 63

Query: 66 MPFHSASSAALMTSMLSISRSSCGWL 89
          +P+H+A+++AL+ SMLS+SR   GW+
Sbjct: 64 LPYHTATASALLNSMLSVSRR--GWI 87

The following BLAST results are available for this feature:

BLAST of Sed0006600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512420.1	1.6e-37	88.54	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
XP_011649972.1	6.0e-37	87.50	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucu...	[more]
XP_022986407.1	1.3e-36	87.50	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
XP_022947067.1	2.3e-36	88.54	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
XP_022943541.1	3.0e-36	86.46	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]

BLAST of Sed0006600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZJ3	1.4e-07	43.18	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Sed0006600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7G1	6.5e-37	87.50	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
A0A6J1G5E8	1.1e-36	88.54	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
A0A6J1FS03	1.5e-36	86.46	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
A0A6J1I2H5	7.2e-36	86.46	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
A0A6J1CGX5	7.2e-36	87.50	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]

BLAST of Sed0006600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G28395.2	5.9e-14	45.74	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.1	5.9e-14	45.74	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.3	5.9e-14	45.74	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.4	2.1e-11	45.35	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.5	2.1e-11	45.35	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..41
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 3..90
IPR033251	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial	PANTHER	PTHR33156:SF48	PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 3..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0006600.1	Sed0006600.1	mRNA
Sed0006600.2	Sed0006600.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000741	karyogamy