Sed0003629.1 (mRNA) Chayote v1

Overview


Name	Sed0003629.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	mediator of RNA polymerase II transcription subunit 15a
Location	LG06: 4663759 .. 4670515 (+)
Sequence length	1218
RNA-Seq Expression	Sed0003629.1
Synteny	Sed0003629.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATTCATCTCTACTTAAAAGTGAGTATCAAATTCTCTTTGTGTTTCAAAATCTCATTTGAATTCCTTGATTTTCATAAACATCTGATTCTGAAAAACTCACCTGTGATTTTCCGAATCGATTCTGTTGGCCAAATTCTGCCCTAAATCGGTCGAGTAAGAACTCGATTGACCCTTTTCTTTTTGCGATTTTGTTGTTTTTAGAATTTTGACACAATCTTTTCTCGCAGGTTTTATTGCTTCAAATATTTTGAATGGATTCGAATAATTTGGGAGCTGCTACTACTCAGTGTGGAGAATCTGGCGATTGGAGGTCTCAATTGCAGCCCGATTCTCGGCAGAGAATTGTCAACAAGATGTGTGTGATTTCTTACTTCTTTTATTCTTCTTGTTCCACTATATATATATATAGTTATGAATAAACAATCAAGAAAATAACAAAAAATGAGATGAAGAATGGATTGAGTAAGGAATAGATGTATTTATGTTTATGGGTTCTTTTTTTTATCAAGAATATAAGAATTGAGATGAGTTGTTTGGATGAGGTTTTTAGGAGGAGTTAGTTTGGGTAGTTATATTGATGAGTTATTTTGAGTAGTTAAAAATTGAAAGTTATAATAAAAAAACTGGTATGGATGTGATTTTTTTTGTAGAAGAGTTAGAGGAAAAAACTTGATTTGATGTATGTTTAAAATGAGTGGTTATTTTGAGTAGTTAAAAAAAGAATGATTAGAAATAAGAGGTTAAAATGAGTTATTTTGATTAAAATTAGTTGTTAGAAATGATTAGGTAGTCATAAATAAATTATTAAATTTTTTTATAGGAATAAATGGTTAGAAATGATGAGTTATTTTTAAAAGTAAAAATGAAGAGTTATTTTTAAAAAATTATAAAAACTCGTTTGGATGTAGGGTTTGAAGGAGAAATTAGTAAACTCTCATCGTAAATCGTCCTTAAATATGACAAACAAACACCCTGAGAGTTTAAATGAAGTCTTATACGAAAATATAAACCCATAAAACTCTAATTCAATCTCTGACCCAAAATACATAAAAGTCTTGTACAAAAGTATAAACTCAATTACATATTTTGGTTAGGTTTTAGAGGCGTTGTCCTCGAGCCCCCATAAGGTGATCCGCCCCTACTCCTAACTCGCTGATCGAGTAGTGAGATCGCGAGTTGATATAACCTTCATTGCTTAGACCCCGTTTGATAATCATTTGGTTTTTTGTTTATGAAATTTAAGCTTATTTCTACTCAAATTTCCTACCAAGCTTATTTCTACAATATATCTATTTTTCTTTAAGAAAGTAGGTGAATACTAACTAAATTTCAAAAACAAAAACAAGCTTTTGGAAGTTATTTTTTTTTGTTTCCAAATTTTTGTTTTGTTTATTAAAATATAGTTAAGATTTAGGTATCCAAATAAGAAAAAAACTATAAGGTAATTGTTGTCGGCTTAAATTTCAAAAATAAAAAAATAAAATCAAAATGGCTATCAAATGGGGTCTTAGTAGTTAGTATGAGATAGTTTTGTTGTCCTTGTGGGGTGGTGCAATTGGTCAAAAACTTAGACTTTAATGTATACTTTCTTTAAAGATTCAGGCTCAAGACCCAATTATTACATTAATTTGTTGACATCTTTAATTGTGTCTCCACTATGTATTTTGGGCTATGTCCTATGAATGTTCAAGTGGTGTCCCGGTGTTAGGGGAGCAAACATTCAATTCTTGGTCATAAAAAAAGCGATGGTGTTTTGTGATTAAACTATGATGAACATAAGGGTGCACATAAGTTGATCACTTGCCATTCCTTATATTTTTGGGTTGGGTTGGGTCATCGGGTTCATAGATACATTGCAGATATTAATATTTTTAATCAAATTAGTCATATATTAATTATACATAAACAAAATACAATTTTCAACCATTTTCATATCAATATTATAAAATGAATATAAGTATTAAATATGCACAATATCCAATCAAAAGTCACTCATCATTAGTCCATGCAATCTTCATGGTTTATTTAGAAGAACTCCTATAGAACATAATTTGGTTTCTATAAAGTAAATAGATAATTAAAATAACGAAAATATAGAAAAAAATTCAACTTCCATGAATCAAATTGATAATTAAAATAACAAAAATAAAGGACAAAATTCAACTTCCATTAATCAAATGGATAATTAATGTCAATAACAATATATGTCATAATTTGACTATGATATATACATTTTAAAGACTCAAAAGTATTTTAAAGAATATTGAAAAATAAAAAGTTTAAAATTAATAATCAAATAAAATAATTACACACATATATAATTATGTTTTAGGTAAAAAAAAAAAAAAATTAATAAGCTAGTCGGATAAACTTGGATTAGATTTAGGTCAACGCTTCATTCAACCCAATTCATAAAATTTTTATTAACGTGAACTCAATCCGACCCAAAAATGTTTTTAAACTCAATGTTCAGATTATTCGGAACACCCTTTAGAGATGAACATATAAGTGAATAGAGGTGTAAACGGTTCGATCTTGTCTAAATTGGAACCAAACTATATTCCTAACCGAACTGCTCCATTTAGTGGATTTGGCACTGTTGATTAATTAATCCAAAATAAATATAAGTTTTCAAGCTTGAACACCACACCTTAAGAATAAAGTTTGAGCACCTCCCTCCTTTTGCCGCACTTCATATTGATTTTGATTCCGTTTGGATAGTTGATAATAGTTTGATATCCACTTAAAAAAAAAAACGTGCTTCTTACATATAAAGTCATAGCTGAACATGCGCCAACTAAGCCCCAATAAACTTTTATTTCTTATTTCTTCTTTTATTTTATATATTATCGGTCGGTTCGGTTATTTCCGATTTCAATTCATCAAAAATCGAAGCCGATTGAAATTATTTGGGTTTTCATATTTTAAAACCAAAACTGCCCAATAAATTTGGTTTCAGCTTGAATCGATGTCGGTTTCAATCGGTTAAAAAAATTTATGTGGTTTTTCAGTTTTACCTTTCACCCTATAGCTGAGACAGTTAGTTTCTAATTGTTTTCTCTATTATTGATAGGTAATAGTTGTTGATAATCACTGGCGGTATATAATGGTTAAAGAGTAATCATTGTTTGTGTCTTCCAAGTTTCCTTAATATCTAAATGTTGTAGGGGTCAAACAGTTTGCCTCGTGGCAATAATCAGGGTGCACGCAAATTGACCCAGACAATCACGAATATATATATATATATATATACACACACACATATACATACATATGTAGAAAAGAGAACTGTGGTTTAAATTATCCTCGTTGATCTTACCATTTATGGTTTGAAGATATGGTAGGCTAGGGTTTCTAGAGGTTTAGGATTTTCAGGGTATGCTCCTTTAGAGGCCTCATATTCAAAATTTACGAGTGAGTTTAATTGTAAAATCTCTTATCGTCTACTGCTGCCTAGTGACTCACACAAAATTCTCAATTATAAAAAAAAATAGATATTCTTAACCATTCTAAAGTACATTCCTTCAAAATGTCTAATATTTTGAATCATAGACATGCATTACTTATGTAGCTTTCGTTTTCCTTGCTTTTGTGTTCAATAAAAGTAGCTATGTTTTTTATTTCTTTTCATTTTTATATTAGAATGGATACATTGAAGAGAAACCTTTCTATCTCTGGTGATGAGGAATTGAGTGAGCTGAGAAAAATTGCTGCAACGTTTGAGGACCAGATTTATACTACCTCTACTACGGTACGTTAGATGAATAAACGTTTTCTTATGAAAAAGTGGACTAGGTATTTGCATTCAACACTGTATAATAAATACTCATTAATACAAATATTATAAGAATGAATGACGATACTTATTAATATTAATGATTATATTTGCTATTTTTTAAAAATGATCGTATCTATAATTATTTTTCTAGATTTAGCTAGTTTGTAAGTTTCTCTTTTCTTATTTATGTTTAGGCAATTTGATATTAACTATAAGGACGTGTTTGGTTCTCGATTTGGATTCCGAACTCCTACAAAAATACAACAAACTAAGTACAAACCATGAATTGGTTTGGAATTGTGATTCCAAATCATTCCAAATCACTCCACAGTAATAATATAAATTGGATTAGCATGAATTTTACAATTTTTTTTTTTATAAAATAAAATTGATATATTGGTTTTTAGCAATAAGATAAATAAAAAAAGATTTTTAATTAAATTATAATGATAAATTATTTGAATATTATTATTATTTCAATTTTTTTATTATAATGTTAGCTACTATTGGTTATTATTAACTTAATTATAATAATGATAATAATTATTATTATAATAAATTTTAAGTTATATAATCATGATATAATTTATTATTTTTTTAAATATTTCTAAAAATGATTGATACATGTTTATGATTCTGATCATTATTTCTTAATACAGGGAAATATTTATTACCTTGCATAAAAAATGATTAAAAAAAATCAAGATTTAAATATTATTAAATCGTGTTTATTAGTAAAATTTAGAATAAAAATATTAATGCTAATGATTTACATATTATTATTATCATTAGTTTGTTTAAATAATAATATGGTAATACATACTTAACATAATAGTAATAATAACATTGGTTTGTTAGAATAAAAAATATGTAATATAAATTTTATAATTACAATCTAATAAAATTATTTTTAAATTAAAAAATAATTATTATAAATAATACCATCAACATTATTTTTAATACTTTATTAGAATTTCATTATGAAGTAATGTAATGGTGCAGCAACTCAAATAACATTTTTTATTACGGAGTTAGGATACAAACAACCAAACACAATAATCATAGGGAATCAGAATATGTACTTGGGTTTTGGAAATCCAAATTTTGAGCTACTTGATTTTAACATGTGAATTGGTACCAAAGATTTAGTTATGTACTTGTGGACTGTGTATCAAGCTAATACCTATAGGGGCTGTTTGTTTGACATATTTAGGTAGTTTTTTTGGTTAAAAAATTATATTGAGTAGTTAAAAATTGAGAATTGTGTCAAAAACTAGTTTGGATGTAGTTTTTGTGTAGAGGAGTTAGAGTCAAAACCTTGTTTGGATGTGGAGTAAAAAATGAGTAGTTATTTTTAGTAGTTAAAAAAGAAATGATTAAAAATTAATGGTTAAAAATAAGTTATTTTGATTAATTTGAAAGGAATGATTAAAAATAAGTGGTTAGAAATGATTGAGTAGTTATAAATGAATGACTAAAAATGAATGGTTAAAAATGAGAGTTATTTCTAAAAGTAAAAATGAGGAAGAGTTAATAAAAACTTGTTTGGATGTAAGTTTTCGAAGAGGAGTTGATAACTCTCAATTCTAACTCCTACCTAAATATGTCAAACAAACACCCCATAATAACCTATTTTATTATGTTATGCATTCCTGCACTAAATACAATATTGTTTTAACCAAGCATTGTTCGTAAAAGATTGGCGCGCTAAAGTGCAATAGTCTACTAAAATTTAGGCACATAGCGCGAGTACTTTTTTTGCGAGCCACACTAATTTCTCAACAAAAATCATAGGGTTAATGAAACTTATTTTCTCGTGCTTAGATCCGTCTTTTTACGTAAACCTTGCTTATTCTCATGCTTAGACAAGGCGCGAGTCGAGGTGCTAGACTTGAGTCTTGAGATTGGATGGAGTCGCGACCTGGTGAGCTTGCTCTTGAGTACTATGGCTAATTCTATTTTTAACTTTTGATCTCAGGCAAATTATCTAAGGACTATTTCCCTGAAAATGCTGACTATGGAAACCAAATCTCACACCACCAGCAATGAAGCTCTCAATTTTGGTTAGTCAATCTGCAACTATGTTATACAAGAGGGGTTTTTTTTTTTTTAATTTTTTAATTTTTTTAATTTTTTTTTGTTTTTTTGTTCTTAATATTTCAATGATTTCGTACTTAAAATGTGACATTTTTTTAAAAATGATTTGACTTGATGTTGTGTATGCTATTTTAAACAGCATCACAAATCTTGCAGCCTCAAGTTCCGGAGTATAACAAAGAGACACATGGAGAGTAATGGAGCATGAGAAGAATTAATCATGAAATTAATTAAAGGCCTTATTAGAGACCTCATTAATGAATTGTAATATTGTAGTAGTATTTTTATGATACTTAAATACTTCATGAAGAAGTAATATATTATTCGTACTAAGATATGCTAAGTATAAGTTTTTAAGAATATTGTAAGTTTTTTTTATGTGTGGGAGATTCGCCATCTCGAATTGCCTTTGCTATTTTACTTTTATAATTTTATCTGTCTTACCCTCACAATAATTGATTAATCCCAATCTCACATTTAACAGCCCAATCAATCCAGGTCTTGTGCAGCAGCAACAATAACAATATGCATCAACGCAGCCTACAATGTCACAGCGGACGAGACGAGCTTGCCTTCGCATCAGCTGCCTCATTGATCGAGGTCGCATGGCCGGTTTTCAGCTTACCTTCCTCACTATGTTAAATATTTGACGTCGCCTGTGGTTCGATGGTTTTGACTCGATTCGTCTCGGTCTCCTTTGTTGCTTAAAGCTATTATTCGATTTACACATGAGAATTGCGATCTCTCTTTTTCTTGTTCTTGCTTTCTATGGTTCTTTGTTGTTTCTTAAGAGTTCAGTTCATGAAGACCACTTAGAAGTTGATTTTCTACAAATTTTCTTGAGATGTAAATATTGTAGGGTCAAGCGGTATGTCCCGT

mRNA sequence

GAAATTCATCTCTACTTAAAAGTGAGTATCAAATTCTCTTTGTGTTTCAAAATCTCATTTGAATTCCTTGATTTTCATAAACATCTGATTCTGAAAAACTCACCTGTGATTTTCCGAATCGATTCTGTTGGCCAAATTCTGCCCTAAATCGGTCGAGTTTTATTGCTTCAAATATTTTGAATGGATTCGAATAATTTGGGAGCTGCTACTACTCAGTGTGGAGAATCTGGCGATTGGAGGTCTCAATTGCAGCCCGATTCTCGGCAGAGAATTGTCAACAAGATAATGGATACATTGAAGAGAAACCTTTCTATCTCTGGTGATGAGGAATTGAGTGAGCTGAGAAAAATTGCTGCAACGTTTGAGGACCAGATTTATACTACCTCTACTACGGCAAATTATCTAAGGACTATTTCCCTGAAAATGCTGACTATGGAAACCAAATCTCACACCACCAGCAATGAAGCTCTCAATTTTGCATCACAAATCTTGCAGCCTCAAGTTCCGGAGTATAACAAAGAGACACATGGAGAGTAATGGAGCATGAGAAGAATTAATCATGAAATTAATTAAAGGCCTTATTAGAGACCTCATTAATGAATTGTAATATTGTAGTAGTATTTTTATGATACTTAAATACTTCATGAAGAAGTAATATATTATTCGTACTAAGATATGCTAAGTATAAGTTTTTAAGAATATTGTAAGTTTTTTTTATGTGTGGGAGATTCGCCATCTCGAATTGCCTTTGCTATTTTACTTTTATAATTTTATCTGTCTTACCCTCACAATAATTGATTAATCCCAATCTCACATTTAACAGCCCAATCAATCCAGGTCTTGTGCAGCAGCAACAATAACAATATGCATCAACGCAGCCTACAATGTCACAGCGGACGAGACGAGCTTGCCTTCGCATCAGCTGCCTCATTGATCGAGGTCGCATGGCCGGTTTTCAGCTTACCTTCCTCACTATGTTAAATATTTGACGTCGCCTGTGGTTCGATGGTTTTGACTCGATTCGTCTCGGTCTCCTTTGTTGCTTAAAGCTATTATTCGATTTACACATGAGAATTGCGATCTCTCTTTTTCTTGTTCTTGCTTTCTATGGTTCTTTGTTGTTTCTTAAGAGTTCAGTTCATGAAGACCACTTAGAAGTTGATTTTCTACAAATTTTCTTGAGATGTAAATATTGTAGGGTCAAGCGGTATGTCCCGT

Coding sequence (CDS)

ATGGATTCGAATAATTTGGGAGCTGCTACTACTCAGTGTGGAGAATCTGGCGATTGGAGGTCTCAATTGCAGCCCGATTCTCGGCAGAGAATTGTCAACAAGATAATGGATACATTGAAGAGAAACCTTTCTATCTCTGGTGATGAGGAATTGAGTGAGCTGAGAAAAATTGCTGCAACGTTTGAGGACCAGATTTATACTACCTCTACTACGGCAAATTATCTAAGGACTATTTCCCTGAAAATGCTGACTATGGAAACCAAATCTCACACCACCAGCAATGAAGCTCTCAATTTTGCATCACAAATCTTGCAGCCTCAAGTTCCGGAGTATAACAAAGAGACACATGGAGAGTAA

Protein sequence

MDSNNLGAATTQCGESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTTANYLRTISLKMLTMETKSHTTSNEALNFASQILQPQVPEYNKETHGE

Homology

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BLAST of Sed0003629.1 vs. NCBI nr
Match: KAG6571702.1 (Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.9 bits (302), Expect = 7.2e-24
Identity = 75/125 (60.00%), Postives = 90/125 (72.00%), Query Frame = 0


Query: 1   MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MD+NN     TQ G    E+GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+K
Sbjct: 1   MDTNNW--RPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT------------TSNEALNFASQI 109
           IA  FE++IYT +T+ ++YLR ISLKMLTMETKS T             SN+ L+ ASQ 
Sbjct: 61  IAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNKPLDSASQS 120

[Close]

BLAST of Sed0003629.1 vs. NCBI nr
Match: XP_022963528.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 120.9 bits (302), Expect = 7.2e-24
Identity = 75/125 (60.00%), Postives = 90/125 (72.00%), Query Frame = 0


Query: 1   MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MD+NN     TQ G    E+GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+K
Sbjct: 1   MDTNNW--RPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT------------TSNEALNFASQI 109
           IA  FE++IYT +T+ ++YLR ISLKMLTMETKS T             SN+ L+ ASQ 
Sbjct: 61  IAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNKPLDSASQS 120

[Close]

BLAST of Sed0003629.1 vs. NCBI nr
Match: XP_023553730.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.9 bits (302), Expect = 7.2e-24
Identity = 75/125 (60.00%), Postives = 90/125 (72.00%), Query Frame = 0


Query: 1   MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MD+NN     TQ G    E+GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+K
Sbjct: 1   MDTNNW--RPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT------------TSNEALNFASQI 109
           IA  FE++IYT +T+ ++YLR ISLKMLTMETKS T             SN+ L+ ASQ 
Sbjct: 61  IAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNKPLDSASQS 120

[Close]

BLAST of Sed0003629.1 vs. NCBI nr
Match: KAG7011427.1 (Mediator of RNA polymerase II transcription subunit 15a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.9 bits (302), Expect = 7.2e-24
Identity = 75/125 (60.00%), Postives = 90/125 (72.00%), Query Frame = 0


Query: 1   MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MD+NN     TQ G    E+GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+K
Sbjct: 1   MDTNNW--RPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT------------TSNEALNFASQI 109
           IA  FE++IYT +T+ ++YLR ISLKMLTMETKS T             SN+ L+ ASQ 
Sbjct: 61  IAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNKPLDSASQS 120

[Close]

BLAST of Sed0003629.1 vs. NCBI nr
Match: XP_022967562.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 120.6 bits (301), Expect = 9.4e-24
Identity = 75/125 (60.00%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 1   MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MD+NN     TQ G    E GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+K
Sbjct: 1   MDTNNW--RPTQGGEPGIEDGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT------------TSNEALNFASQI 109
           IA  FE++IYT +T+ ++YLR ISLKMLTMETKS T             SN+ L+ ASQ 
Sbjct: 61  IAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNKPLDSASQS 120

[Close]

BLAST of Sed0003629.1 vs. ExPASy Swiss-Prot
Match: F4I171 (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-18
Identity = 51/100 (51.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 1   MDSNNLGAATTQ---CGESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKI 60
           MD+NN   +        ++GDWR+QL PDSRQ+IVNKIM+TLK++L  SG E ++ELR+I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AATFEDQIYTTS-TTANYLRTISLKMLTMETKSHTTSNEA 97
           AA FE++I++ +    +YLR IS+KMLTMETKS   +  +
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS 100

[Close]

BLAST of Sed0003629.1 vs. ExPASy TrEMBL
Match: A0A6J1HI15 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463831 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.5e-24
Identity = 75/125 (60.00%), Postives = 90/125 (72.00%), Query Frame = 0


Query: 1   MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MD+NN     TQ G    E+GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+K
Sbjct: 1   MDTNNW--RPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT------------TSNEALNFASQI 109
           IA  FE++IYT +T+ ++YLR ISLKMLTMETKS T             SN+ L+ ASQ 
Sbjct: 61  IAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNKPLDSASQS 120

[Close]

BLAST of Sed0003629.1 vs. ExPASy TrEMBL
Match: A0A6J1HR60 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467027 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.6e-24
Identity = 75/125 (60.00%), Postives = 89/125 (71.20%), Query Frame = 0


Query: 1   MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MD+NN     TQ G    E GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+K
Sbjct: 1   MDTNNW--RPTQGGEPGIEDGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT------------TSNEALNFASQI 109
           IA  FE++IYT +T+ ++YLR ISLKMLTMETKS T             SN+ L+ ASQ 
Sbjct: 61  IAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNKPLDSASQS 120

[Close]

BLAST of Sed0003629.1 vs. ExPASy TrEMBL
Match: A0A6J1JMY4 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485927 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.0e-23
Identity = 74/122 (60.66%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 1   MDSNNLGAATTQCGES----GDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MDSNN   A  Q GES    GDWRSQLQPDSR RIVNKIM+TLKR+L +SG E LSELRK
Sbjct: 1   MDSNNWRPA--QGGESGVDAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGHEGLSELRK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHTT---------SNEALNFASQILQP 109
           IA  FE++IY  +T+ ++YLR ISLKMLTMETKS TT         +N+ L+  SQ +Q 
Sbjct: 61  IAVRFEEKIYAAATSQSDYLRKISLKMLTMETKSQTTALPSNSMVPTNKPLDSTSQSMQS 120

[Close]

BLAST of Sed0003629.1 vs. ExPASy TrEMBL
Match: A0A6J1JM75 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485927 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.0e-23
Identity = 74/122 (60.66%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 1   MDSNNLGAATTQCGES----GDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MDSNN   A  Q GES    GDWRSQLQPDSR RIVNKIM+TLKR+L +SG E LSELRK
Sbjct: 1   MDSNNWRPA--QGGESGVDAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGHEGLSELRK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHTT---------SNEALNFASQILQP 109
           IA  FE++IY  +T+ ++YLR ISLKMLTMETKS TT         +N+ L+  SQ +Q 
Sbjct: 61  IAVRFEEKIYAAATSQSDYLRKISLKMLTMETKSQTTALPSNSMVPTNKPLDSTSQSMQS 120

[Close]

BLAST of Sed0003629.1 vs. ExPASy TrEMBL
Match: A0A6J1JK72 (mediator of RNA polymerase II transcription subunit 15a-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111485927 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.0e-23
Identity = 74/122 (60.66%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 1   MDSNNLGAATTQCGES----GDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MDSNN   A  Q GES    GDWRSQLQPDSR RIVNKIM+TLKR+L +SG E LSELRK
Sbjct: 1   MDSNNWRPA--QGGESGVDAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGHEGLSELRK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHTT---------SNEALNFASQILQP 109
           IA  FE++IY  +T+ ++YLR ISLKMLTMETKS TT         +N+ L+  SQ +Q 
Sbjct: 61  IAVRFEEKIYAAATSQSDYLRKISLKMLTMETKSQTTALPSNSMVPTNKPLDSTSQSMQS 120

[Close]

BLAST of Sed0003629.1 vs. TAIR 10
Match: AT1G15780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). )

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-19
Identity = 51/100 (51.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 1   MDSNNLGAATTQ---CGESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKI 60
           MD+NN   +        ++GDWR+QL PDSRQ+IVNKIM+TLK++L  SG E ++ELR+I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AATFEDQIYTTS-TTANYLRTISLKMLTMETKSHTTSNEA 97
           AA FE++I++ +    +YLR IS+KMLTMETKS   +  +
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS 100

[Close]

BLAST of Sed0003629.1 vs. TAIR 10
Match: AT1G15790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-12
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 16  SGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIY-TTSTTANY 75
           +GDWR+Q    SR RIVNKIM+T  + L     E  +ELRKIA  FE++++   S    Y
Sbjct: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63

Query: 76  LRTISLKMLTMETKSHTTSNEALNFASQILQPQVPE 111
           LR I +KML METKS   +    + A     P VPE
Sbjct: 64  LRQICMKMLNMETKSQNAAGS--SSADDNTPPLVPE 97

[Close]

BLAST of Sed0003629.1 vs. TAIR 10
Match: AT1G15790.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-12
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 16  SGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIY-TTSTTANY 75
           +GDWR+Q    SR RIVNKIM+T  + L     E  +ELRKIA  FE++++   S    Y
Sbjct: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63

Query: 76  LRTISLKMLTMETKSHTTSNEALNFASQILQPQVPE 111
           LR I +KML METKS   +    + A     P VPE
Sbjct: 64  LRQICMKMLNMETKSQNAAGS--SSADDNTPPLVPE 97

The following BLAST results are available for this feature:

BLAST of Sed0003629.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571702.1	7.2e-24	60.00	Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argy...	[more]
XP_022963528.1	7.2e-24	60.00	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi...	[more]
XP_023553730.1	7.2e-24	60.00	mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo sub...	[more]
KAG7011427.1	7.2e-24	60.00	Mediator of RNA polymerase II transcription subunit 15a [Cucurbita argyrosperma ...	[more]
XP_022967562.1	9.4e-24	60.00	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi...	[more]

BLAST of Sed0003629.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I171	2.8e-18	51.00	Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ...	[more]

BLAST of Sed0003629.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HI15	3.5e-24	60.00	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur...	[more]
A0A6J1HR60	4.6e-24	60.00	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur...	[more]
A0A6J1JMY4	5.0e-23	60.66	mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur...	[more]
A0A6J1JM75	5.0e-23	60.66	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucur...	[more]
A0A6J1JK72	5.0e-23	60.66	mediator of RNA polymerase II transcription subunit 15a-like isoform X3 OS=Cucur...	[more]

BLAST of Sed0003629.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15780.1	2.0e-19	51.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G15790.1	2.3e-12	44.79	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G15790.2	2.3e-12	44.79	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036546	Mediator complex subunit 15, KIX domain	PFAM	PF16987	KIX_2	coord: 17..94 e-value: 1.4E-29 score: 102.0
IPR036529	Coactivator CBP, KIX domain superfamily	GENE3D	1.10.246.20	Coactivator CBP, KIX domain	coord: 18..97 e-value: 1.4E-18 score: 68.7
IPR036529	Coactivator CBP, KIX domain superfamily	SUPERFAMILY	47040	Kix domain of CBP (creb binding protein)	coord: 17..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR33137:SF27	OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATED	coord: 1..94
IPR044661	Mediator of RNA polymerase II transcription subunit 15a/b/c-like	PANTHER	PTHR33137	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED	coord: 1..94

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0003629	Sed0003629	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0003629.1-five_prime_utr	Sed0003629.1-five_prime_utr-LG06:4663759..4663914	five_prime_UTR
Sed0003629.1-five_prime_utr	Sed0003629.1-five_prime_utr-LG06:4663989..4664012	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0003629.1-exon	Sed0003629.1-exon-LG06:4663759..4663914	exon
Sed0003629.1-exon	Sed0003629.1-exon-LG06:4663989..4664116	exon
Sed0003629.1-exon	Sed0003629.1-exon-LG06:4667404..4667512	exon
Sed0003629.1-exon	Sed0003629.1-exon-LG06:4669518..4669602	exon
Sed0003629.1-exon	Sed0003629.1-exon-LG06:4669776..4670515	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0003629.1-cds	Sed0003629.1-cds-LG06:4664013..4664116	CDS
Sed0003629.1-cds	Sed0003629.1-cds-LG06:4667404..4667512	CDS
Sed0003629.1-cds	Sed0003629.1-cds-LG06:4669518..4669602	CDS
Sed0003629.1-cds	Sed0003629.1-cds-LG06:4669776..4669834	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0003629.1-three_prime_utr	Sed0003629.1-three_prime_utr-LG06:4669835..4670515	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0003629.1	Sed0003629.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0003712	transcription coregulator activity