Sed0003629 (gene) Chayote v1

Overview
NameSed0003629
Typegene
OrganismSechium edule (Chayote v1)
Descriptionmediator of RNA polymerase II transcription subunit 15a
LocationLG06: 4663697 .. 4670515 (+)
RNA-Seq ExpressionSed0003629
SyntenySed0003629
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGGATGAAAGTGAAGCATTGGGGGAAGAAATTATTGGGCGAAGAAGAACCAAAAGCTTGCGAAATTCATCTCTACTTAAAAGTGAGTATCAAATTCTCTTTGTGTTTCAAAATCTCATTTGAATTCCTTGATTTTCATAAACATCTGATTCTGAAAAACTCACCTGTGATTTTCCGAATCGATTCTGTTGGCCAAATTCTGCCCTAAATCGGTCGAGTAAGAACTCGATTGACCCTTTTCTTTTTGCGATTTTGTTGTTTTTAGAATTTTGACACAATCTTTTCTCGCAGGTTTTATTGCTTCAAATATTTTGAATGGATTCGAATAATTTGGGAGCTGCTACTACTCAGTGTGGAGAATCTGGCGATTGGAGGTCTCAATTGCAGCCCGATTCTCGGCAGAGAATTGTCAACAAGATGTGTGTGATTTCTTACTTCTTTTATTCTTCTTGTTCCACTATATATATATATAGTTATGAATAAACAATCAAGAAAATAACAAAAAATGAGATGAAGAATGGATTGAGTAAGGAATAGATGTATTTATGTTTATGGGTTCTTTTTTTTATCAAGAATATAAGAATTGAGATGAGTTGTTTGGATGAGGTTTTTAGGAGGAGTTAGTTTGGGTAGTTATATTGATGAGTTATTTTGAGTAGTTAAAAATTGAAAGTTATAATAAAAAAACTGGTATGGATGTGATTTTTTTTGTAGAAGAGTTAGAGGAAAAAACTTGATTTGATGTATGTTTAAAATGAGTGGTTATTTTGAGTAGTTAAAAAAAGAATGATTAGAAATAAGAGGTTAAAATGAGTTATTTTGATTAAAATTAGTTGTTAGAAATGATTAGGTAGTCATAAATAAATTATTAAATTTTTTTATAGGAATAAATGGTTAGAAATGATGAGTTATTTTTAAAAGTAAAAATGAAGAGTTATTTTTAAAAAATTATAAAAACTCGTTTGGATGTAGGGTTTGAAGGAGAAATTAGTAAACTCTCATCGTAAATCGTCCTTAAATATGACAAACAAACACCCTGAGAGTTTAAATGAAGTCTTATACGAAAATATAAACCCATAAAACTCTAATTCAATCTCTGACCCAAAATACATAAAAGTCTTGTACAAAAGTATAAACTCAATTACATATTTTGGTTAGGTTTTAGAGGCGTTGTCCTCGAGCCCCCATAAGGTGATCCGCCCCTACTCCTAACTCGCTGATCGAGTAGTGAGATCGCGAGTTGATATAACCTTCATTGCTTAGACCCCGTTTGATAATCATTTGGTTTTTTGTTTATGAAATTTAAGCTTATTTCTACTCAAATTTCCTACCAAGCTTATTTCTACAATATATCTATTTTTCTTTAAGAAAGTAGGTGAATACTAACTAAATTTCAAAAACAAAAACAAGCTTTTGGAAGTTATTTTTTTTTGTTTCCAAATTTTTGTTTTGTTTATTAAAATATAGTTAAGATTTAGGTATCCAAATAAGAAAAAAACTATAAGGTAATTGTTGTCGGCTTAAATTTCAAAAATAAAAAAATAAAATCAAAATGGCTATCAAATGGGGTCTTAGTAGTTAGTATGAGATAGTTTTGTTGTCCTTGTGGGGTGGTGCAATTGGTCAAAAACTTAGACTTTAATGTATACTTTCTTTAAAGATTCAGGCTCAAGACCCAATTATTACATTAATTTGTTGACATCTTTAATTGTGTCTCCACTATGTATTTTGGGCTATGTCCTATGAATGTTCAAGTGGTGTCCCGGTGTTAGGGGAGCAAACATTCAATTCTTGGTCATAAAAAAAGCGATGGTGTTTTGTGATTAAACTATGATGAACATAAGGGTGCACATAAGTTGATCACTTGCCATTCCTTATATTTTTGGGTTGGGTTGGGTCATCGGGTTCATAGATACATTGCAGATATTAATATTTTTAATCAAATTAGTCATATATTAATTATACATAAACAAAATACAATTTTCAACCATTTTCATATCAATATTATAAAATGAATATAAGTATTAAATATGCACAATATCCAATCAAAAGTCACTCATCATTAGTCCATGCAATCTTCATGGTTTATTTAGAAGAACTCCTATAGAACATAATTTGGTTTCTATAAAGTAAATAGATAATTAAAATAACGAAAATATAGAAAAAAATTCAACTTCCATGAATCAAATTGATAATTAAAATAACAAAAATAAAGGACAAAATTCAACTTCCATTAATCAAATGGATAATTAATGTCAATAACAATATATGTCATAATTTGACTATGATATATACATTTTAAAGACTCAAAAGTATTTTAAAGAATATTGAAAAATAAAAAGTTTAAAATTAATAATCAAATAAAATAATTACACACATATATAATTATGTTTTAGGTAAAAAAAAAAAAAAATTAATAAGCTAGTCGGATAAACTTGGATTAGATTTAGGTCAACGCTTCATTCAACCCAATTCATAAAATTTTTATTAACGTGAACTCAATCCGACCCAAAAATGTTTTTAAACTCAATGTTCAGATTATTCGGAACACCCTTTAGAGATGAACATATAAGTGAATAGAGGTGTAAACGGTTCGATCTTGTCTAAATTGGAACCAAACTATATTCCTAACCGAACTGCTCCATTTAGTGGATTTGGCACTGTTGATTAATTAATCCAAAATAAATATAAGTTTTCAAGCTTGAACACCACACCTTAAGAATAAAGTTTGAGCACCTCCCTCCTTTTGCCGCACTTCATATTGATTTTGATTCCGTTTGGATAGTTGATAATAGTTTGATATCCACTTAAAAAAAAAAACGTGCTTCTTACATATAAAGTCATAGCTGAACATGCGCCAACTAAGCCCCAATAAACTTTTATTTCTTATTTCTTCTTTTATTTTATATATTATCGGTCGGTTCGGTTATTTCCGATTTCAATTCATCAAAAATCGAAGCCGATTGAAATTATTTGGGTTTTCATATTTTAAAACCAAAACTGCCCAATAAATTTGGTTTCAGCTTGAATCGATGTCGGTTTCAATCGGTTAAAAAAATTTATGTGGTTTTTCAGTTTTACCTTTCACCCTATAGCTGAGACAGTTAGTTTCTAATTGTTTTCTCTATTATTGATAGGTAATAGTTGTTGATAATCACTGGCGGTATATAATGGTTAAAGAGTAATCATTGTTTGTGTCTTCCAAGTTTCCTTAATATCTAAATGTTGTAGGGGTCAAACAGTTTGCCTCGTGGCAATAATCAGGGTGCACGCAAATTGACCCAGACAATCACGAATATATATATATATATATATACACACACACATATACATACATATGTAGAAAAGAGAACTGTGGTTTAAATTATCCTCGTTGATCTTACCATTTATGGTTTGAAGATATGGTAGGCTAGGGTTTCTAGAGGTTTAGGATTTTCAGGGTATGCTCCTTTAGAGGCCTCATATTCAAAATTTACGAGTGAGTTTAATTGTAAAATCTCTTATCGTCTACTGCTGCCTAGTGACTCACACAAAATTCTCAATTATAAAAAAAAATAGATATTCTTAACCATTCTAAAGTACATTCCTTCAAAATGTCTAATATTTTGAATCATAGACATGCATTACTTATGTAGCTTTCGTTTTCCTTGCTTTTGTGTTCAATAAAAGTAGCTATGTTTTTTATTTCTTTTCATTTTTATATTAGAATGGATACATTGAAGAGAAACCTTTCTATCTCTGGTGATGAGGAATTGAGTGAGCTGAGAAAAATTGCTGCAACGTTTGAGGACCAGATTTATACTACCTCTACTACGGTACGTTAGATGAATAAACGTTTTCTTATGAAAAAGTGGACTAGGTATTTGCATTCAACACTGTATAATAAATACTCATTAATACAAATATTATAAGAATGAATGACGATACTTATTAATATTAATGATTATATTTGCTATTTTTTAAAAATGATCGTATCTATAATTATTTTTCTAGATTTAGCTAGTTTGTAAGTTTCTCTTTTCTTATTTATGTTTAGGCAATTTGATATTAACTATAAGGACGTGTTTGGTTCTCGATTTGGATTCCGAACTCCTACAAAAATACAACAAACTAAGTACAAACCATGAATTGGTTTGGAATTGTGATTCCAAATCATTCCAAATCACTCCACAGTAATAATATAAATTGGATTAGCATGAATTTTACAATTTTTTTTTTTATAAAATAAAATTGATATATTGGTTTTTAGCAATAAGATAAATAAAAAAAGATTTTTAATTAAATTATAATGATAAATTATTTGAATATTATTATTATTTCAATTTTTTTATTATAATGTTAGCTACTATTGGTTATTATTAACTTAATTATAATAATGATAATAATTATTATTATAATAAATTTTAAGTTATATAATCATGATATAATTTATTATTTTTTTAAATATTTCTAAAAATGATTGATACATGTTTATGATTCTGATCATTATTTCTTAATACAGGGAAATATTTATTACCTTGCATAAAAAATGATTAAAAAAAATCAAGATTTAAATATTATTAAATCGTGTTTATTAGTAAAATTTAGAATAAAAATATTAATGCTAATGATTTACATATTATTATTATCATTAGTTTGTTTAAATAATAATATGGTAATACATACTTAACATAATAGTAATAATAACATTGGTTTGTTAGAATAAAAAATATGTAATATAAATTTTATAATTACAATCTAATAAAATTATTTTTAAATTAAAAAATAATTATTATAAATAATACCATCAACATTATTTTTAATACTTTATTAGAATTTCATTATGAAGTAATGTAATGGTGCAGCAACTCAAATAACATTTTTTATTACGGAGTTAGGATACAAACAACCAAACACAATAATCATAGGGAATCAGAATATGTACTTGGGTTTTGGAAATCCAAATTTTGAGCTACTTGATTTTAACATGTGAATTGGTACCAAAGATTTAGTTATGTACTTGTGGACTGTGTATCAAGCTAATACCTATAGGGGCTGTTTGTTTGACATATTTAGGTAGTTTTTTTGGTTAAAAAATTATATTGAGTAGTTAAAAATTGAGAATTGTGTCAAAAACTAGTTTGGATGTAGTTTTTGTGTAGAGGAGTTAGAGTCAAAACCTTGTTTGGATGTGGAGTAAAAAATGAGTAGTTATTTTTAGTAGTTAAAAAAGAAATGATTAAAAATTAATGGTTAAAAATAAGTTATTTTGATTAATTTGAAAGGAATGATTAAAAATAAGTGGTTAGAAATGATTGAGTAGTTATAAATGAATGACTAAAAATGAATGGTTAAAAATGAGAGTTATTTCTAAAAGTAAAAATGAGGAAGAGTTAATAAAAACTTGTTTGGATGTAAGTTTTCGAAGAGGAGTTGATAACTCTCAATTCTAACTCCTACCTAAATATGTCAAACAAACACCCCATAATAACCTATTTTATTATGTTATGCATTCCTGCACTAAATACAATATTGTTTTAACCAAGCATTGTTCGTAAAAGATTGGCGCGCTAAAGTGCAATAGTCTACTAAAATTTAGGCACATAGCGCGAGTACTTTTTTTGCGAGCCACACTAATTTCTCAACAAAAATCATAGGGTTAATGAAACTTATTTTCTCGTGCTTAGATCCGTCTTTTTACGTAAACCTTGCTTATTCTCATGCTTAGACAAGGCGCGAGTCGAGGTGCTAGACTTGAGTCTTGAGATTGGATGGAGTCGCGACCTGGTGAGCTTGCTCTTGAGTACTATGGCTAATTCTATTTTTAACTTTTGATCTCAGGCAAATTATCTAAGGACTATTTCCCTGAAAATGCTGACTATGGAAACCAAATCTCACACCACCAGCAATGAAGCTCTCAATTTTGGTTAGTCAATCTGCAACTATGTTATACAAGAGGGGTTTTTTTTTTTTTAATTTTTTAATTTTTTTAATTTTTTTTTGTTTTTTTGTTCTTAATATTTCAATGATTTCGTACTTAAAATGTGACATTTTTTTAAAAATGATTTGACTTGATGTTGTGTATGCTATTTTAAACAGCATCACAAATCTTGCAGCCTCAAGTTCCGGAGTATAACAAAGAGACACATGGAGAGTAATGGAGCATGAGAAGAATTAATCATGAAATTAATTAAAGGCCTTATTAGAGACCTCATTAATGAATTGTAATATTGTAGTAGTATTTTTATGATACTTAAATACTTCATGAAGAAGTAATATATTATTCGTACTAAGATATGCTAAGTATAAGTTTTTAAGAATATTGTAAGTTTTTTTTATGTGTGGGAGATTCGCCATCTCGAATTGCCTTTGCTATTTTACTTTTATAATTTTATCTGTCTTACCCTCACAATAATTGATTAATCCCAATCTCACATTTAACAGCCCAATCAATCCAGGTCTTGTGCAGCAGCAACAATAACAATATGCATCAACGCAGCCTACAATGTCACAGCGGACGAGACGAGCTTGCCTTCGCATCAGCTGCCTCATTGATCGAGGTCGCATGGCCGGTTTTCAGCTTACCTTCCTCACTATGTTAAATATTTGACGTCGCCTGTGGTTCGATGGTTTTGACTCGATTCGTCTCGGTCTCCTTTGTTGCTTAAAGCTATTATTCGATTTACACATGAGAATTGCGATCTCTCTTTTTCTTGTTCTTGCTTTCTATGGTTCTTTGTTGTTTCTTAAGAGTTCAGTTCATGAAGACCACTTAGAAGTTGATTTTCTACAAATTTTCTTGAGATGTAAATATTGTAGGGTCAAGCGGTATGTCCCGT

mRNA sequence

AATGGATGAAAGTGAAGCATTGGGGGAAGAAATTATTGGGCGAAGAAGAACCAAAAGCTTGCGAAATTCATCTCTACTTAAAAGTTTTATTGCTTCAAATATTTTGAATGGATTCGAATAATTTGGGAGCTGCTACTACTCAGTGTGGAGAATCTGGCGATTGGAGGTCTCAATTGCAGCCCGATTCTCGGCAGAGAATTGTCAACAAGATAATGGATACATTGAAGAGAAACCTTTCTATCTCTGGTGATGAGGAATTGAGTGAGCTGAGAAAAATTGCTGCAACGTTTGAGGACCAGATTTATACTACCTCTACTACGGCAAATTATCTAAGGACTATTTCCCTGAAAATGCTGACTATGGAAACCAAATCTCACACCACCAGCAATGAAGCTCTCAATTTTGCATCACAAATCTTGCAGCCTCAAGTTCCGGAGTATAACAAAGAGACACATGGAGAGTAATGGAGCATGAGAAGAATTAATCATGAAATTAATTAAAGGCCTTATTAGAGACCTCATTAATGAATTGTAATATTGTAGTAGTATTTTTATGATACTTAAATACTTCATGAAGAAGTAATATATTATTCGTACTAAGATATGCTAAGTATAAGTTTTTAAGAATATTGTAAGTTTTTTTTATGTGTGGGAGATTCGCCATCTCGAATTGCCTTTGCTATTTTACTTTTATAATTTTATCTGTCTTACCCTCACAATAATTGATTAATCCCAATCTCACATTTAACAGCCCAATCAATCCAGGTCTTGTGCAGCAGCAACAATAACAATATGCATCAACGCAGCCTACAATGTCACAGCGGACGAGACGAGCTTGCCTTCGCATCAGCTGCCTCATTGATCGAGGTCGCATGGCCGGTTTTCAGCTTACCTTCCTCACTATGTTAAATATTTGACGTCGCCTGTGGTTCGATGGTTTTGACTCGATTCGTCTCGGTCTCCTTTGTTGCTTAAAGCTATTATTCGATTTACACATGAGAATTGCGATCTCTCTTTTTCTTGTTCTTGCTTTCTATGGTTCTTTGTTGTTTCTTAAGAGTTCAGTTCATGAAGACCACTTAGAAGTTGATTTTCTACAAATTTTCTTGAGATGTAAATATTGTAGGGTCAAGCGGTATGTCCCGT

Coding sequence (CDS)

ATGGATTCGAATAATTTGGGAGCTGCTACTACTCAGTGTGGAGAATCTGGCGATTGGAGGTCTCAATTGCAGCCCGATTCTCGGCAGAGAATTGTCAACAAGATAATGGATACATTGAAGAGAAACCTTTCTATCTCTGGTGATGAGGAATTGAGTGAGCTGAGAAAAATTGCTGCAACGTTTGAGGACCAGATTTATACTACCTCTACTACGGCAAATTATCTAAGGACTATTTCCCTGAAAATGCTGACTATGGAAACCAAATCTCACACCACCAGCAATGAAGCTCTCAATTTTGCATCACAAATCTTGCAGCCTCAAGTTCCGGAGTATAACAAAGAGACACATGGAGAGTAA

Protein sequence

MDSNNLGAATTQCGESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIYTTSTTANYLRTISLKMLTMETKSHTTSNEALNFASQILQPQVPEYNKETHGE
Homology
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BLAST of Sed0003629 vs. NCBI nr
Match: KAG6571702.1 (Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.9 bits (302), Expect = 7.2e-24
Identity = 75/125 (60.00%), Postives = 90/125 (72.00%), Query Frame = 0 

Query: 1   MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MD+NN     TQ G    E+GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+K
Sbjct: 1   MDTNNW--RPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT------------TSNEALNFASQI 109
           IA  FE++IYT +T+ ++YLR ISLKMLTMETKS T             SN+ L+ ASQ 
Sbjct: 61  IAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNKPLDSASQS 120

[Close]
BLAST of Sed0003629 vs. NCBI nr
Match: XP_022963528.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 120.9 bits (302), Expect = 7.2e-24
Identity = 75/125 (60.00%), Postives = 90/125 (72.00%), Query Frame = 0 

Query: 1   MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MD+NN     TQ G    E+GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+K
Sbjct: 1   MDTNNW--RPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT------------TSNEALNFASQI 109
           IA  FE++IYT +T+ ++YLR ISLKMLTMETKS T             SN+ L+ ASQ 
Sbjct: 61  IAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNKPLDSASQS 120

[Close]
BLAST of Sed0003629 vs. NCBI nr
Match: XP_023553730.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.9 bits (302), Expect = 7.2e-24
Identity = 75/125 (60.00%), Postives = 90/125 (72.00%), Query Frame = 0 

Query: 1   MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MD+NN     TQ G    E+GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+K
Sbjct: 1   MDTNNW--RPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT------------TSNEALNFASQI 109
           IA  FE++IYT +T+ ++YLR ISLKMLTMETKS T             SN+ L+ ASQ 
Sbjct: 61  IAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNKPLDSASQS 120

[Close]
BLAST of Sed0003629 vs. NCBI nr
Match: KAG7011427.1 (Mediator of RNA polymerase II transcription subunit 15a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.9 bits (302), Expect = 7.2e-24
Identity = 75/125 (60.00%), Postives = 90/125 (72.00%), Query Frame = 0 

Query: 1   MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MD+NN     TQ G    E+GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+K
Sbjct: 1   MDTNNW--RPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT------------TSNEALNFASQI 109
           IA  FE++IYT +T+ ++YLR ISLKMLTMETKS T             SN+ L+ ASQ 
Sbjct: 61  IAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNKPLDSASQS 120

[Close]
BLAST of Sed0003629 vs. NCBI nr
Match: XP_022967562.1 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 120.6 bits (301), Expect = 9.4e-24
Identity = 75/125 (60.00%), Postives = 89/125 (71.20%), Query Frame = 0 

Query: 1   MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MD+NN     TQ G    E GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+K
Sbjct: 1   MDTNNW--RPTQGGEPGIEDGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT------------TSNEALNFASQI 109
           IA  FE++IYT +T+ ++YLR ISLKMLTMETKS T             SN+ L+ ASQ 
Sbjct: 61  IAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNKPLDSASQS 120

[Close]
BLAST of Sed0003629 vs. ExPASy Swiss-Prot
Match: F4I171 (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-18
Identity = 51/100 (51.00%), Postives = 72/100 (72.00%), Query Frame = 0 

Query: 1   MDSNNLGAATTQ---CGESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKI 60
           MD+NN   +        ++GDWR+QL PDSRQ+IVNKIM+TLK++L  SG E ++ELR+I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AATFEDQIYTTS-TTANYLRTISLKMLTMETKSHTTSNEA 97
           AA FE++I++ +    +YLR IS+KMLTMETKS   +  +
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS 100

[Close]
BLAST of Sed0003629 vs. ExPASy TrEMBL
Match: A0A6J1HI15 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463831 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.5e-24
Identity = 75/125 (60.00%), Postives = 90/125 (72.00%), Query Frame = 0 

Query: 1   MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MD+NN     TQ G    E+GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+K
Sbjct: 1   MDTNNW--RPTQGGEPGIEAGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT------------TSNEALNFASQI 109
           IA  FE++IYT +T+ ++YLR ISLKMLTMETKS T             SN+ L+ ASQ 
Sbjct: 61  IAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNKPLDSASQS 120

[Close]
BLAST of Sed0003629 vs. ExPASy TrEMBL
Match: A0A6J1HR60 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467027 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.6e-24
Identity = 75/125 (60.00%), Postives = 89/125 (71.20%), Query Frame = 0 

Query: 1   MDSNNLGAATTQCG----ESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MD+NN     TQ G    E GDWRSQLQPDSRQRIVNKIM+TLKR+L +SG E LSEL+K
Sbjct: 1   MDTNNW--RPTQGGEPGIEDGDWRSQLQPDSRQRIVNKIMETLKRHLPVSGHEGLSELKK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHT------------TSNEALNFASQI 109
           IA  FE++IYT +T+ ++YLR ISLKMLTMETKS T             SN+ L+ ASQ 
Sbjct: 61  IAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQTPMGTSLPSNPMVPSNKPLDSASQS 120

[Close]
BLAST of Sed0003629 vs. ExPASy TrEMBL
Match: A0A6J1JMY4 (mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485927 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.0e-23
Identity = 74/122 (60.66%), Postives = 87/122 (71.31%), Query Frame = 0 

Query: 1   MDSNNLGAATTQCGES----GDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MDSNN   A  Q GES    GDWRSQLQPDSR RIVNKIM+TLKR+L +SG E LSELRK
Sbjct: 1   MDSNNWRPA--QGGESGVDAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGHEGLSELRK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHTT---------SNEALNFASQILQP 109
           IA  FE++IY  +T+ ++YLR ISLKMLTMETKS TT         +N+ L+  SQ +Q 
Sbjct: 61  IAVRFEEKIYAAATSQSDYLRKISLKMLTMETKSQTTALPSNSMVPTNKPLDSTSQSMQS 120

[Close]
BLAST of Sed0003629 vs. ExPASy TrEMBL
Match: A0A6J1JM75 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485927 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.0e-23
Identity = 74/122 (60.66%), Postives = 87/122 (71.31%), Query Frame = 0 

Query: 1   MDSNNLGAATTQCGES----GDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MDSNN   A  Q GES    GDWRSQLQPDSR RIVNKIM+TLKR+L +SG E LSELRK
Sbjct: 1   MDSNNWRPA--QGGESGVDAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGHEGLSELRK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHTT---------SNEALNFASQILQP 109
           IA  FE++IY  +T+ ++YLR ISLKMLTMETKS TT         +N+ L+  SQ +Q 
Sbjct: 61  IAVRFEEKIYAAATSQSDYLRKISLKMLTMETKSQTTALPSNSMVPTNKPLDSTSQSMQS 120

[Close]
BLAST of Sed0003629 vs. ExPASy TrEMBL
Match: A0A6J1JK72 (mediator of RNA polymerase II transcription subunit 15a-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111485927 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.0e-23
Identity = 74/122 (60.66%), Postives = 87/122 (71.31%), Query Frame = 0 

Query: 1   MDSNNLGAATTQCGES----GDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRK 60
           MDSNN   A  Q GES    GDWRSQLQPDSR RIVNKIM+TLKR+L +SG E LSELRK
Sbjct: 1   MDSNNWRPA--QGGESGVDAGDWRSQLQPDSRHRIVNKIMETLKRHLPVSGHEGLSELRK 60

Query: 61  IAATFEDQIYTTSTT-ANYLRTISLKMLTMETKSHTT---------SNEALNFASQILQP 109
           IA  FE++IY  +T+ ++YLR ISLKMLTMETKS TT         +N+ L+  SQ +Q 
Sbjct: 61  IAVRFEEKIYAAATSQSDYLRKISLKMLTMETKSQTTALPSNSMVPTNKPLDSTSQSMQS 120

[Close]
BLAST of Sed0003629 vs. TAIR 10
Match: AT1G15780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). )

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-19
Identity = 51/100 (51.00%), Postives = 72/100 (72.00%), Query Frame = 0 

Query: 1   MDSNNLGAATTQ---CGESGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKI 60
           MD+NN   +        ++GDWR+QL PDSRQ+IVNKIM+TLK++L  SG E ++ELR+I
Sbjct: 1   MDNNNWRPSLPNGEPAMDTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRRI 60

Query: 61  AATFEDQIYTTS-TTANYLRTISLKMLTMETKSHTTSNEA 97
           AA FE++I++ +    +YLR IS+KMLTMETKS   +  +
Sbjct: 61  AARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNAAGSS 100

[Close]
BLAST of Sed0003629 vs. TAIR 10
Match: AT1G15790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 170 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 170; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-12
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 0 

Query: 16  SGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIY-TTSTTANY 75
           +GDWR+Q    SR RIVNKIM+T  + L     E  +ELRKIA  FE++++   S    Y
Sbjct: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63

Query: 76  LRTISLKMLTMETKSHTTSNEALNFASQILQPQVPE 111
           LR I +KML METKS   +    + A     P VPE
Sbjct: 64  LRQICMKMLNMETKSQNAAGS--SSADDNTPPLVPE 97

[Close]
BLAST of Sed0003629 vs. TAIR 10
Match: AT1G15790.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-12
Identity = 43/96 (44.79%), Postives = 55/96 (57.29%), Query Frame = 0 

Query: 16  SGDWRSQLQPDSRQRIVNKIMDTLKRNLSISGDEELSELRKIAATFEDQIY-TTSTTANY 75
           +GDWR+Q    SR RIVNKIM+T  + L     E  +ELRKIA  FE++++   S    Y
Sbjct: 4   TGDWRTQFPSASRSRIVNKIMETQLKQLPFIRPEGTNELRKIAVRFEEKLFNNASNQTEY 63

Query: 76  LRTISLKMLTMETKSHTTSNEALNFASQILQPQVPE 111
           LR I +KML METKS   +    + A     P VPE
Sbjct: 64  LRQICMKMLNMETKSQNAAGS--SSADDNTPPLVPE 97

The following BLAST results are available for this feature:
BLAST of Sed0003629 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571702.17.2e-2460.00Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argy... [more]
XP_022963528.17.2e-2460.00mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi... [more]
XP_023553730.17.2e-2460.00mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita pepo sub... [more]
KAG7011427.17.2e-2460.00Mediator of RNA polymerase II transcription subunit 15a [Cucurbita argyrosperma ... [more]
XP_022967562.19.4e-2460.00mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbi... [more]
BLAST of Sed0003629 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4I1712.8e-1851.00Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ... [more]
BLAST of Sed0003629 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HI153.5e-2460.00mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur... [more]
A0A6J1HR604.6e-2460.00mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur... [more]
A0A6J1JMY45.0e-2360.66mediator of RNA polymerase II transcription subunit 15a-like isoform X1 OS=Cucur... [more]
A0A6J1JM755.0e-2360.66mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Cucur... [more]
A0A6J1JK725.0e-2360.66mediator of RNA polymerase II transcription subunit 15a-like isoform X3 OS=Cucur... [more]
BLAST of Sed0003629 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G15780.12.0e-1951.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G15790.12.3e-1244.79unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G15790.22.3e-1244.79unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036546Mediator complex subunit 15, KIX domainPFAMPF16987KIX_2coord: 17..94
e-value: 1.4E-29
score: 102.0
IPR036529Coactivator CBP, KIX domain superfamilyGENE3D1.10.246.20Coactivator CBP, KIX domaincoord: 18..97
e-value: 1.4E-18
score: 68.7
IPR036529Coactivator CBP, KIX domain superfamilySUPERFAMILY47040Kix domain of CBP (creb binding protein)coord: 17..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR33137:SF27OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A, PUTATIVE-RELATEDcoord: 1..94
IPR044661Mediator of RNA polymerase II transcription subunit 15a/b/c-likePANTHERPTHR33137MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATEDcoord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0003629.2Sed0003629.2mRNA
Sed0003629.1Sed0003629.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0031490 chromatin DNA binding
molecular_function GO:0003713 transcription coactivator activity
molecular_function GO:0003712 transcription coregulator activity