Sed0000742.3 (mRNA) Chayote v1

Overview


Name	Sed0000742.3
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	mitochondrial import inner membrane translocase subunit TIM10-like
Location	LG13: 19615678 .. 19618540 (-)
Sequence length	1063
RNA-Seq Expression	Sed0000742.3
Synteny	Sed0000742.3

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCACAGCCCAGCCCAAGACAAATTTCAACTATTAACTCTAAAACCCTAACGCTCATAAACACTGCACCGCCCGCCCTCCTCCTCGCATCGCCGCCGTCGGCCGCCATCTTCACCGCCGTATCGACTCCAGATCCGGTCTGCAAATTACGGTACATGATCCTCATTTCCATCTTTAATTAAGAAAATTCTACGCCACACTACAAATAAGTAATCCCTTTAAACCTAAAATCTTAAAAGCCTCACCGAGATTTGGGGAAATGATTGTAATTGCATTCTCCCAGAGATTTCGCAGCGGGATTTTGCCTCTATCAATCACTGATCGGATTCGTGGATTCCATTAATAAACAGCGTTACGATCTTCAAATTTTGCATTGGCAATTCATCTGAAGTAAGTTTGTCATTTCGGCTTGTTCTAAATAAATTGTTCCATTTTTGTGGGTATTTGAATTCCTGAGATTGTGAATTTGTTTGATTCAGAGTCTCAATGGCTTCTCCTAACGATATGCCATCGGCTGTGGACAAGGAACAGGTTGGTTTCTATGTCTTGTATTCGTTTTTCTTTACGTTCTTGCACATTCATAGCTATGATTTGGGATTCTAGTGTTTGGAATGAGTACATTGAGAGTATCCCAGATCAAGAGTGGAATCCGTGTTCTTATTCTGGTGGGTTTCTTCAAATTGGACTAATGTTCGTGTCCCCAACGGGTGACACAGTGGTTGAAGACTTGATCTTTGAAGGTATGAGGGTATGTACTCCTCTAGGTCCTAGGTTCGATACTCAGCTGTGACATTACTCCTTCCATATCTCCCGGTGTCTGGCTTAGAGACATATGTAGTTACTCTTGTTTCAAAAAATAAAATTGGACTAATATTAGTTACGAAGGAGTATGGTAAACGTTTCATCAATTGTGTGAAAGCCTGTCAATAGGTATCTAGGTTTCAAGCTCTAATCTCTTTTATGGTTTAATCTATCCAGTTGCTGAATTCTGTTCATTTAGAGTGATGAATATTTTCAGTTGATTAGCTTTTTGTTAATTCTTAAAACAATGTAGTTATATTTAGAATGTAGTTCATAAATTCGCAATTATCATCATTACAATTTAATTTTGAAATTTTTGCATTTGAGCAGATATTTGGTATGGCAGAAAAGGAGATGGAATATCGAGTTGAATTATTCAACAAGTAGGTTTTATTCCATATCTTCTTTTATTTTTCACCTTTTATTAAATAAGAGATGCATTGTAATAATTTTATCATGGTGGAAGATTCTATATTTGTTGTTTTATTGAGATATCTGAGCTTCATGCTTGATGCTTCTACCTTCTTCATAGAATTTAATCTTTATGCTTTTGTTTTTCTCTGTCTTTTTCAGGCTTACACACTCATGTTTTAACAAATGTGTTGATAAGAGGTAGGATACTAGTCCTACTCCTTCATTTCTATACTTGAATATTGCATATTTCCTAATTTCCCAAGGTTTTAGTTTTGGCATTATAGAATTAATTTTATCTCTATTCATTTTGAGAGTTATGCATGGTTATTTTTGTTTGTGATTTAACATTTACTATTTATTTTAGGTACAAGGAGTCTGAGCTGAATATGGGTGAAAATAGTTGCATTGACCGCTGTGTTTCCAAGTATTGGCATGTAAGTTAATTTTTACCTTTTATGCTCTGTATGTCCTTTAGTGATGAGATATGTGATGATCAAATAGTACAGAAGCAATTGCCAGCAAGAGCTTAGGTCAACTGATAACCAAGAGGTTATGGGTTTAAATCATCCTCAAATGTTGTATTAAAAAAAACAAATAGTACAGAAAGCAAGAGGGTTATGAACCAGAGCATTGTTGATATAATTCATCAAGGTTATTATGAAGTTCATCAAGGTTTATTATGAAGGGTTATAAACCAAATGAACCACACCCAAATGAAATTGAATTTTAAAAAATGACTTTTTATTATGAAGTTCATCATGGTTTTTTTTTCTTGACTTTGACGAGTGGTTGCGTATTTGCTAAACGAAACAAGGTGTCTTCAGATAGGAGTAAGACAAGCCATTGGTGATATAATTCATCATATTATGAGCCTGAATTTTCTGTAGAGTTAAAGCACTCTCTTAAGTTCCAAATTATAGAAATTTCATACAGCTATATCCATGTGATCAAACTCTTGTATAGAAGATCAATTGGATTGCATTTTATTCTGAACTGGCATTTCATGATTGATGAGCATACACACAGTTTCTCCTACAACTTATAATGCTCACTTTGACATTTTCTTGTAAAATTCACTCCCCCTAACTTTATCGATGATCGATTCTTTGATTCGGCCTATTTACAATCAAATAACATATTTTCTGGAACTTGCATTATCATTTGTTAACTACTTGACTCTATGCTTCAGGTAACCAATTTAGTCGGCCAGCTACTCGGCTCGGGCAGACCTCCAATGTGACTTGCTTCCTGATCTGAGTAATTGCTTAGTGAGTTTGGAATGAAGAACTTTGATTCATGCATTTTTTGGTCTGATTAATTTTCCATCTCACTTAAATGACTTGTTTTTCTGTTCAAGGAAAAGTATGGATGATAATGGCAGATTCTAGTAATTTTTACAGTTTTCTTCACTCCATTTTCTCTTCAGTTTATTTTTCCAGATAAATATAAGATTGGGTCTCCATACCCTTTTTATTTTCGTTGCTCAAGATTATAGCGGCTGCATCTATACATCGCCACTATCTTTCTTGTCAATTCCTTAATTTCAGTGTCTGAAAAGGAAGGCTTAATAATGTGTCTAATTGTACTTTGCCTTGAGAATATTTTAGTGTTTGGACTCCATTTATATAAATCACTTTTGAGGCATAC

mRNA sequence

CTCTCACAGCCCAGCCCAAGACAAATTTCAACTATTAACTCTAAAACCCTAACGCTCATAAACACTGCACCGCCCGCCCTCCTCCTCGCATCGCCGCCGTCGGCCGCCATCTTCACCGCCGTATCGACTCCAGATCCGGTCTGCAAATTACGGTACATGATCCTCATTTCCATCTTTAATTAAGAAAATTCTACGCCACACTACAAATAAGTAATCCCTTTAAACCTAAAATCTTAAAAGCCTCACCGAGATTTGGGGAAATGATTGTAATTGCATTCTCCCAGAGATTTCGCAGCGGGATTTTGCCTCTATCAATCACTGATCGGATTCGTGGATTCCATTAATAAACAGCGTTACGATCTTCAAATTTTGCATTGGCAATTCATCTGAAAGTCTCAATGGCTTCTCCTAACGATATGCCATCGGCTGTGGACAAGGAACAGATATTTGGTATGGCAGAAAAGGAGATGGAATATCGAGTTGAATTATTCAACAAGCTTACACACTCATGTTTTAACAAATGTGTTGATAAGAGGTACAAGGAGTCTGAGCTGAATATGGGTGAAAATAGTTGCATTGACCGCTGTGTTTCCAAGTATTGGCATGTAACCAATTTAGTCGGCCAGCTACTCGGCTCGGGCAGACCTCCAATGTGACTTGCTTCCTGATCTGAGTAATTGCTTAGTGAGTTTGGAATGAAGAACTTTGATTCATGCATTTTTTGGTCTGATTAATTTTCCATCTCACTTAAATGACTTGTTTTTCTGTTCAAGGAAAAGTATGGATGATAATGGCAGATTCTAGTAATTTTTACAGTTTTCTTCACTCCATTTTCTCTTCAGTTTATTTTTCCAGATAAATATAAGATTGGGTCTCCATACCCTTTTTATTTTCGTTGCTCAAGATTATAGCGGCTGCATCTATACATCGCCACTATCTTTCTTGTCAATTCCTTAATTTCAGTGTCTGAAAAGGAAGGCTTAATAATGTGTCTAATTGTACTTTGCCTTGAGAATATTTTAGTGTTTGGACTCCATTTATATAAATCACTTTTGAGGCATAC

Coding sequence (CDS)

ATGGCTTCTCCTAACGATATGCCATCGGCTGTGGACAAGGAACAGATATTTGGTATGGCAGAAAAGGAGATGGAATATCGAGTTGAATTATTCAACAAGCTTACACACTCATGTTTTAACAAATGTGTTGATAAGAGGTACAAGGAGTCTGAGCTGAATATGGGTGAAAATAGTTGCATTGACCGCTGTGTTTCCAAGTATTGGCATGTAACCAATTTAGTCGGCCAGCTACTCGGCTCGGGCAGACCTCCAATGTGA

Protein sequence

MASPNDMPSAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLVGQLLGSGRPPM

Homology

[Close]

BLAST of Sed0000742.3 vs. NCBI nr
Match: XP_038894964.1 (mitochondrial import inner membrane translocase subunit TIM10 [Benincasa hispida])

HSP 1 Score: 181.4 bits (459), Expect = 3.2e-42
Identity = 83/85 (97.65%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MASPNDMPSAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCI 60
          MASPN+MPSAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCI
Sbjct: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCI 60

Query: 61 DRCVSKYWHVTNLVGQLLGSGRPPM 86
          DRCVSKYWHVTNL+GQLLGSGRPPM
Sbjct: 61 DRCVSKYWHVTNLIGQLLGSGRPPM 85

[Close]

BLAST of Sed0000742.3 vs. NCBI nr
Match: XP_022970585.1 (mitochondrial import inner membrane translocase subunit TIM10-like [Cucurbita maxima])

HSP 1 Score: 179.5 bits (454), Expect = 1.2e-41
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MASPNDMPSAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCI 60
          MASPNDMPSA+DKEQIFGMAEKEMEYRVELFNKLT SCFNKCVDKRYKESELNMGENSCI
Sbjct: 1  MASPNDMPSAMDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRYKESELNMGENSCI 60

Query: 61 DRCVSKYWHVTNLVGQLLGSGRPPM 86
          DRCVSKYWHVTNLVGQLLGSGRPPM
Sbjct: 61 DRCVSKYWHVTNLVGQLLGSGRPPM 85

[Close]

BLAST of Sed0000742.3 vs. NCBI nr
Match: XP_004145269.1 (mitochondrial import inner membrane translocase subunit TIM10 [Cucumis sativus] >XP_008457418.1 PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Cucumis melo] >KGN65773.1 hypothetical protein Csa_023233 [Cucumis sativus] >TYJ97353.1 mitochondrial import inner membrane translocase subunit TIM10-like [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 2.7e-41
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MASPNDMPSAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCI 60
          MASPN+MPSAVDKEQIFGMAEKEMEYRVELFNKLT SCFNKCVDKRYKESELNMGENSCI
Sbjct: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRYKESELNMGENSCI 60

Query: 61 DRCVSKYWHVTNLVGQLLGSGRPPM 86
          DRCVSKYWHVTNL+GQLLGSGRPPM
Sbjct: 61 DRCVSKYWHVTNLIGQLLGSGRPPM 85

[Close]

BLAST of Sed0000742.3 vs. NCBI nr
Match: XP_022964898.1 (mitochondrial import inner membrane translocase subunit TIM10-like [Cucurbita moschata] >KAG7019162.1 Mitochondrial import inner membrane translocase subunit TIM10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 176.4 bits (446), Expect = 1.0e-40
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MASPNDMPSAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCI 60
          MASPNDM SA+DKEQIFGMAEKEMEYRVELFNKLT SCFNKCVDKRYKESELNMGENSCI
Sbjct: 1  MASPNDMQSAMDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRYKESELNMGENSCI 60

Query: 61 DRCVSKYWHVTNLVGQLLGSGRPPM 86
          DRCVSKYWHVTNLVGQLLGSGRPPM
Sbjct: 61 DRCVSKYWHVTNLVGQLLGSGRPPM 85

[Close]

BLAST of Sed0000742.3 vs. NCBI nr
Match: KAG6583395.1 (Mitochondrial import inner membrane translocase subunit TIM10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.4 bits (446), Expect = 1.0e-40
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1   MASPNDMPSAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCI 60
           MASPNDM SA+DKEQIFGMAEKEMEYRVELFNKLT SCFNKCVDKRYKESELNMGENSCI
Sbjct: 24  MASPNDMQSAMDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRYKESELNMGENSCI 83

Query: 61  DRCVSKYWHVTNLVGQLLGSGRPPM 86
           DRCVSKYWHVTNLVGQLLGSGRPPM
Sbjct: 84  DRCVSKYWHVTNLVGQLLGSGRPPM 108

[Close]

BLAST of Sed0000742.3 vs. ExPASy Swiss-Prot
Match: Q9ZW33 (Mitochondrial import inner membrane translocase subunit TIM10 OS=Arabidopsis thaliana OX=3702 GN=TIM10 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-31
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 1  MASPNDMPSAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCI 60
          MASP  +P  V KEQ F MA+ EMEYRVELFNKL  +CFNKCVDKRYKE+ELNMGENSCI
Sbjct: 1  MASP--IPVGVTKEQAFSMAQTEMEYRVELFNKLAQTCFNKCVDKRYKEAELNMGENSCI 60

Query: 61 DRCVSKYWHVTNLVGQLLGSGRPPM 86
          DRCVSKYW V  +VGQLL +G+PP+
Sbjct: 61 DRCVSKYWQVNGMVGQLLSAGKPPV 83

[Close]

BLAST of Sed0000742.3 vs. ExPASy Swiss-Prot
Match: Q9W2D6 (Mitochondrial import inner membrane translocase subunit Tim10 OS=Drosophila melanogaster OX=7227 GN=Tim10 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.1e-11
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 9  SAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYW 68
          S  D+ ++  M E E+E   +L+N++T++C  KC+  RY ESEL  GE  CIDRCV+KY 
Sbjct: 7  STADQAKLQLMQEMEIEMMSDLYNRMTNACHKKCIPPRYSESELGKGEMVCIDRCVAKYL 66

Query: 69 HVTNLVGQLL 79
           +   +G+ L
Sbjct: 67 DIHEKIGKKL 76

[Close]

BLAST of Sed0000742.3 vs. ExPASy Swiss-Prot
Match: P87108 (Mitochondrial import inner membrane translocase subunit TIM10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TIM10 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.8e-11
Identity = 27/66 (40.91%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 11 VDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHV 70
          +  +Q    AE E++   ++FNKL ++C+ KC++  Y E ELN  E+SC+DRCV+KY+  
Sbjct: 13 LSSQQKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFET 72

Query: 71 TNLVGQ 77
             VG+
Sbjct: 73 NVQVGE 78

[Close]

BLAST of Sed0000742.3 vs. ExPASy Swiss-Prot
Match: Q759W7 (Mitochondrial import inner membrane translocase subunit TIM10 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=TIM10 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-10
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 11 VDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHV 70
          +  +Q    AE E++   ++FNKL  +C  KC+D  Y E +LN  E++C+DRCV+KY+  
Sbjct: 10 LSSQQKIAAAEAELDLVTDMFNKLVSNCHRKCIDMNYNEGDLNKNESNCLDRCVAKYFET 69

Query: 71 TNLVGQ 77
             VG+
Sbjct: 70 NVKVGE 75

[Close]

BLAST of Sed0000742.3 vs. ExPASy Swiss-Prot
Match: Q2NKR1 (Mitochondrial import inner membrane translocase subunit Tim10 OS=Bos taurus OX=9913 GN=TIMM10 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-10
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 20 AEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLVGQLL 79
          AE E+E   +++N++T +C  KCV   YKE+EL+ GE+ C+DRCVSKY  +   +G+ L
Sbjct: 11 AELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKL 69

[Close]

BLAST of Sed0000742.3 vs. ExPASy TrEMBL
Match: A0A6J1I395 (mitochondrial import inner membrane translocase subunit TIM10-like OS=Cucurbita maxima OX=3661 GN=LOC111469520 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.0e-42
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MASPNDMPSAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCI 60
          MASPNDMPSA+DKEQIFGMAEKEMEYRVELFNKLT SCFNKCVDKRYKESELNMGENSCI
Sbjct: 1  MASPNDMPSAMDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRYKESELNMGENSCI 60

Query: 61 DRCVSKYWHVTNLVGQLLGSGRPPM 86
          DRCVSKYWHVTNLVGQLLGSGRPPM
Sbjct: 61 DRCVSKYWHVTNLVGQLLGSGRPPM 85

[Close]

BLAST of Sed0000742.3 vs. ExPASy TrEMBL
Match: A0A5D3BDG9 (Mitochondrial import inner membrane translocase subunit TIM10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001630 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.3e-41
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MASPNDMPSAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCI 60
          MASPN+MPSAVDKEQIFGMAEKEMEYRVELFNKLT SCFNKCVDKRYKESELNMGENSCI
Sbjct: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRYKESELNMGENSCI 60

Query: 61 DRCVSKYWHVTNLVGQLLGSGRPPM 86
          DRCVSKYWHVTNL+GQLLGSGRPPM
Sbjct: 61 DRCVSKYWHVTNLIGQLLGSGRPPM 85

[Close]

BLAST of Sed0000742.3 vs. ExPASy TrEMBL
Match: A0A0A0LVG1 (zf-Tim10_DDP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G527890 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.3e-41
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MASPNDMPSAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCI 60
          MASPN+MPSAVDKEQIFGMAEKEMEYRVELFNKLT SCFNKCVDKRYKESELNMGENSCI
Sbjct: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRYKESELNMGENSCI 60

Query: 61 DRCVSKYWHVTNLVGQLLGSGRPPM 86
          DRCVSKYWHVTNL+GQLLGSGRPPM
Sbjct: 61 DRCVSKYWHVTNLIGQLLGSGRPPM 85

[Close]

BLAST of Sed0000742.3 vs. ExPASy TrEMBL
Match: A0A1S3C655 (mitochondrial import inner membrane translocase subunit TIM10 OS=Cucumis melo OX=3656 GN=LOC103497109 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.3e-41
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 1  MASPNDMPSAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCI 60
          MASPN+MPSAVDKEQIFGMAEKEMEYRVELFNKLT SCFNKCVDKRYKESELNMGENSCI
Sbjct: 1  MASPNNMPSAVDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRYKESELNMGENSCI 60

Query: 61 DRCVSKYWHVTNLVGQLLGSGRPPM 86
          DRCVSKYWHVTNL+GQLLGSGRPPM
Sbjct: 61 DRCVSKYWHVTNLIGQLLGSGRPPM 85

[Close]

BLAST of Sed0000742.3 vs. ExPASy TrEMBL
Match: A0A6J1HM98 (mitochondrial import inner membrane translocase subunit TIM10-like OS=Cucurbita moschata OX=3662 GN=LOC111464866 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 5.0e-41
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 1  MASPNDMPSAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCI 60
          MASPNDM SA+DKEQIFGMAEKEMEYRVELFNKLT SCFNKCVDKRYKESELNMGENSCI
Sbjct: 1  MASPNDMQSAMDKEQIFGMAEKEMEYRVELFNKLTQSCFNKCVDKRYKESELNMGENSCI 60

Query: 61 DRCVSKYWHVTNLVGQLLGSGRPPM 86
          DRCVSKYWHVTNLVGQLLGSGRPPM
Sbjct: 61 DRCVSKYWHVTNLVGQLLGSGRPPM 85

[Close]

BLAST of Sed0000742.3 vs. TAIR 10
Match: AT2G29530.1 (Tim10/DDP family zinc finger protein )

HSP 1 Score: 136.7 bits (343), Expect = 8.5e-33
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 1  MASPNDMPSAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCI 60
          MASP  +P  V KEQ F MA+ EMEYRVELFNKL  +CFNKCVDKRYKE+ELNMGENSCI
Sbjct: 1  MASP--IPVGVTKEQAFSMAQTEMEYRVELFNKLAQTCFNKCVDKRYKEAELNMGENSCI 60

Query: 61 DRCVSKYWHVTNLVGQLLGSGRPPM 86
          DRCVSKYW V  +VGQLL +G+PP+
Sbjct: 61 DRCVSKYWQVNGMVGQLLSAGKPPV 83

[Close]

BLAST of Sed0000742.3 vs. TAIR 10
Match: AT2G29530.2 (Tim10/DDP family zinc finger protein )

HSP 1 Score: 136.7 bits (343), Expect = 8.5e-33
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 0


Query: 1  MASPNDMPSAVDKEQIFGMAEKEMEYRVELFNKLTHSCFNKCVDKRYKESELNMGENSCI 60
          MASP  +P  V KEQ F MA+ EMEYRVELFNKL  +CFNKCVDKRYKE+ELNMGENSCI
Sbjct: 1  MASP--IPVGVTKEQAFSMAQTEMEYRVELFNKLAQTCFNKCVDKRYKEAELNMGENSCI 60

Query: 61 DRCVSKYWHVTNLVGQLLGSGRPPM 86
          DRCVSKYW V  +VGQLL +G+PP+
Sbjct: 61 DRCVSKYWQVNGMVGQLLSAGKPPV 83

[Close]

BLAST of Sed0000742.3 vs. TAIR 10
Match: AT2G29530.3 (Tim10/DDP family zinc finger protein )

HSP 1 Score: 121.3 bits (303), Expect = 3.7e-28
Identity = 62/109 (56.88%), Postives = 70/109 (64.22%), Query Frame = 0


Query: 1   MASPNDMPSAVDKEQIFGMAEKEMEYRVELFNK------------------------LTH 60
           MASP  +P  V KEQ F MA+ EMEYRVELFN                         L  
Sbjct: 1   MASP--IPVGVTKEQAFSMAQTEMEYRVELFNNDIYKLEEYKFETADMSKILRLPELLAQ 60

Query: 61  SCFNKCVDKRYKESELNMGENSCIDRCVSKYWHVTNLVGQLLGSGRPPM 86
           +CFNKCVDKRYKE+ELNMGENSCIDRCVSKYW V  +VGQLL +G+PP+
Sbjct: 61  TCFNKCVDKRYKEAELNMGENSCIDRCVSKYWQVNGMVGQLLSAGKPPV 107

The following BLAST results are available for this feature:

BLAST of Sed0000742.3 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894964.1	3.2e-42	97.65	mitochondrial import inner membrane translocase subunit TIM10 [Benincasa hispida...	[more]
XP_022970585.1	1.2e-41	97.65	mitochondrial import inner membrane translocase subunit TIM10-like [Cucurbita ma...	[more]
XP_004145269.1	2.7e-41	96.47	mitochondrial import inner membrane translocase subunit TIM10 [Cucumis sativus] ...	[more]
XP_022964898.1	1.0e-40	96.47	mitochondrial import inner membrane translocase subunit TIM10-like [Cucurbita mo...	[more]
KAG6583395.1	1.0e-40	96.47	Mitochondrial import inner membrane translocase subunit TIM10, partial [Cucurbit...	[more]

BLAST of Sed0000742.3 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZW33	1.2e-31	74.12	Mitochondrial import inner membrane translocase subunit TIM10 OS=Arabidopsis tha...	[more]
Q9W2D6	3.1e-11	42.86	Mitochondrial import inner membrane translocase subunit Tim10 OS=Drosophila mela...	[more]
P87108	6.8e-11	40.91	Mitochondrial import inner membrane translocase subunit TIM10 OS=Saccharomyces c...	[more]
Q759W7	2.0e-10	39.39	Mitochondrial import inner membrane translocase subunit TIM10 OS=Ashbya gossypii...	[more]
Q2NKR1	2.6e-10	45.76	Mitochondrial import inner membrane translocase subunit Tim10 OS=Bos taurus OX=9...	[more]

BLAST of Sed0000742.3 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I395	6.0e-42	97.65	mitochondrial import inner membrane translocase subunit TIM10-like OS=Cucurbita ...	[more]
A0A5D3BDG9	1.3e-41	96.47	Mitochondrial import inner membrane translocase subunit TIM10-like OS=Cucumis me...	[more]
A0A0A0LVG1	1.3e-41	96.47	zf-Tim10_DDP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G52789...	[more]
A0A1S3C655	1.3e-41	96.47	mitochondrial import inner membrane translocase subunit TIM10 OS=Cucumis melo OX...	[more]
A0A6J1HM98	5.0e-41	96.47	mitochondrial import inner membrane translocase subunit TIM10-like OS=Cucurbita ...	[more]

BLAST of Sed0000742.3 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G29530.1	8.5e-33	74.12	Tim10/DDP family zinc finger protein	[more]
AT2G29530.2	8.5e-33	74.12	Tim10/DDP family zinc finger protein	[more]
AT2G29530.3	3.7e-28	56.88	Tim10/DDP family zinc finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004217	Tim10-like	PFAM	PF02953	zf-Tim10_DDP	coord: 19..77 e-value: 5.9E-21 score: 73.8
IPR035427	Tim10-like domain superfamily	GENE3D	1.10.287.810	Mitochondrial import inner membrane translocase subunit tim13 like domains	coord: 11..80 e-value: 4.9E-24 score: 85.6
IPR035427	Tim10-like domain superfamily	SUPERFAMILY	144122	Tim10-like	coord: 23..79
None	No IPR available	PANTHER	PTHR11038:SF22	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM10-LIKE	coord: 4..85
None	No IPR available	PANTHER	PTHR11038	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM10	coord: 4..85

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0000742	Sed0000742	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000742.3-three_prime_utr	Sed0000742.3-three_prime_utr-LG13:19615678..19616084	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000742.3-exon	Sed0000742.3-exon-LG13:19615678..19616135	exon
Sed0000742.3-exon	Sed0000742.3-exon-LG13:19616891..19616960	exon
Sed0000742.3-exon	Sed0000742.3-exon-LG13:19617127..19617165	exon
Sed0000742.3-exon	Sed0000742.3-exon-LG13:19617356..19617408	exon
Sed0000742.3-exon	Sed0000742.3-exon-LG13:19618009..19618060	exon
Sed0000742.3-exon	Sed0000742.3-exon-LG13:19618150..19618540	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000742.3-cds	Sed0000742.3-cds-LG13:19616085..19616135	CDS
Sed0000742.3-cds	Sed0000742.3-cds-LG13:19616891..19616960	CDS
Sed0000742.3-cds	Sed0000742.3-cds-LG13:19617127..19617165	CDS
Sed0000742.3-cds	Sed0000742.3-cds-LG13:19617356..19617408	CDS
Sed0000742.3-cds	Sed0000742.3-cds-LG13:19618009..19618053	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0000742.3-five_prime_utr	Sed0000742.3-five_prime_utr-LG13:19618054..19618060	five_prime_UTR
Sed0000742.3-five_prime_utr	Sed0000742.3-five_prime_utr-LG13:19618150..19618540	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0000742.3	Sed0000742.3-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045039	protein insertion into mitochondrial inner membrane
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0008270	zinc ion binding