Pay0005798.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0005798.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	folate transporter 1, chloroplastic-like
Location	chr09: 13237696 .. 13238372 (+)
Sequence length	588
RNA-Seq Expression	Pay0005798.1
Synteny	Pay0005798.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACAATTCATAGATGTGTTTTGTTGCTACAACAGGTTTCTCATGGTGCCATTCAATTTACAGTCTATGAAGAACTCCGTAAAGTTATTGCCAACTCAAGGTCTAAAGGGACCAGAGTCGATGCTCAAAGTTCCGGGGAATTACTGGTACAAATTTTTGGCTTGAGTTTACTCCATTAGATCCTTGGAATGTGAAATGGAAACTCTTAGTCTCTTATTGTGAACTGTCTCTCACACAGAATTCCGGTGATTATGCTGTTCTTGGAGGAACTTCTAAAATTGCTGCCATGCTTTTGACATACCCATTTCAAGTAAATTGAAATTTGCTTTGATGCTGTGAACTGTGGTGTGGTTTTTATAGTCATTTTTCTTAGTTGATTCTTGAGTGACTTGGTTTCAGGTTATTCGAGCTCGGTTGCTACAGTTCAGGAAGAGGAATGTCAAGCCCTTGCTGCATTTGGTGCCTGTTTCCAATATTAATAATTGTTTGAAGAAGCATTTTCGAGACCTTTAAAATGTCGTGATCTTTGAATTTATATAATTCTGTTTGGTTGCAGTTAATTTTACAAGCGTGTTTTCATTGTTGGTGGAATCAGACTTGAATAATATGGGATTTATGTGCTTTAAGATATGAATGGGATTTATTGTTGCTTTAAGATATGAATGGGATTTAT

mRNA sequence

ATGGGAACAATTCATAGATGTGTTTTGTTGCTACAACAGGTTTCTCATGGTGCCATTCAATTTACAGTCTATGAAGAACTCCGTAAAGTTATTGCCAACTCAAGGTCTAAAGGGACCAGAGTCGATGCTCAAAGTTCCGGGGAATTACTGGTACAAATTTTTGGCTTGAGTTTACTCCATTAGATCCTTGGAATGTGAAATGGAAACTCTTAGTCTCTTATTGTGAACTGTCTCTCACACAGAATTCCGGTGATTATGCTGTTCTTGGAGGAACTTCTAAAATTGCTGCCATGCTTTTGACATACCCATTTCAAGTTATTCGAGCTCGGTTGCTACAGTTCAGGAAGAGGAATGTCAAGCCCTTGCTGCATTTGGTGCCTGTTTCCAATATTAATAATTGTTTGAAGAAGCATTTTCGAGACCTTTAAAATGTCGTGATCTTTGAATTTATATAATTCTGTTTGGTTGCAGTTAATTTTACAAGCGTGTTTTCATTGTTGGTGGAATCAGACTTGAATAATATGGGATTTATGTGCTTTAAGATATGAATGGGATTTATTGTTGCTTTAAGATATGAATGGGATTTAT

Coding sequence (CDS)

ATGGGAACAATTCATAGATGTGTTTTGTTGCTACAACAGGTTTCTCATGGTGCCATTCAATTTACAGTCTATGAAGAACTCCGTAAAGTTATTGCCAACTCAAGGTCTAAAGGGACCAGAGTCGATGCTCAAAGTTCCGGGGAATTACTGGTACAAATTTTTGGCTTGAGTTTACTCCATTAG

Protein sequence

MGTIHRCVLLLQQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELLVQIFGLSLLH

Homology

[Close]

BLAST of Pay0005798.1 vs. ExPASy TrEMBL
Match: A0A1S3CS94 (folate transporter 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103504213 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.2e-18
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MGTIHRCVLLLQQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL 51
          MGTIHRCVLLLQQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL
Sbjct: 1  MGTIHRCVLLLQQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL 50

[Close]

BLAST of Pay0005798.1 vs. ExPASy TrEMBL
Match: A0A5D3CM20 (Folate transporter 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001670 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.9e-11
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 10  LLQQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL 51
           L+ QVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL
Sbjct: 177 LMLQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL 217

[Close]

BLAST of Pay0005798.1 vs. ExPASy TrEMBL
Match: A0A5D3BGA3 (Putative receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold222G00150 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.9e-11
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 10  LLQQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL 51
           L+ QVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL
Sbjct: 231 LMLQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL 271

[Close]

BLAST of Pay0005798.1 vs. ExPASy TrEMBL
Match: A0A1S3B2N4 (folate transporter 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485089 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-11
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 10  LLQQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL 51
           L+ QVSHGAIQFTVYEELRK+IANSRSKGTRVDAQSSGELL
Sbjct: 169 LMLQVSHGAIQFTVYEELRKIIANSRSKGTRVDAQSSGELL 209

[Close]

BLAST of Pay0005798.1 vs. ExPASy TrEMBL
Match: A0A5A7SHT3 (Folate transporter 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold253G002040 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-11
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 10  LLQQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL 51
           L+ QVSHGAIQFTVYEELRK+IANSRSKGTRVDAQSSGELL
Sbjct: 177 LMLQVSHGAIQFTVYEELRKIIANSRSKGTRVDAQSSGELL 217

[Close]

BLAST of Pay0005798.1 vs. NCBI nr
Match: XP_008466887.1 (PREDICTED: folate transporter 1, chloroplastic-like [Cucumis melo])

HSP 1 Score: 99.8 bits (247), Expect = 8.7e-18
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MGTIHRCVLLLQQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL 51
          MGTIHRCVLLLQQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL
Sbjct: 1  MGTIHRCVLLLQQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL 50

[Close]

BLAST of Pay0005798.1 vs. NCBI nr
Match: TYK12585.1 (folate transporter 1 [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 6.1e-11
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 10  LLQQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL 51
           L+ QVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL
Sbjct: 177 LMLQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL 217

[Close]

BLAST of Pay0005798.1 vs. NCBI nr
Match: TYJ98104.1 (putative receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 6.1e-11
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 10  LLQQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL 51
           L+ QVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL
Sbjct: 231 LMLQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL 271

[Close]

BLAST of Pay0005798.1 vs. NCBI nr
Match: XP_008440771.1 (PREDICTED: folate transporter 1, chloroplastic isoform X1 [Cucumis melo] >XP_016899232.1 PREDICTED: folate transporter 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 7.9e-11
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 10  LLQQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL 51
           L+ QVSHGAIQFTVYEELRK+IANSRSKGTRVDAQSSGELL
Sbjct: 169 LMLQVSHGAIQFTVYEELRKIIANSRSKGTRVDAQSSGELL 209

[Close]

BLAST of Pay0005798.1 vs. NCBI nr
Match: KAA0025710.1 (folate transporter 1 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 7.9e-11
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 10  LLQQVSHGAIQFTVYEELRKVIANSRSKGTRVDAQSSGELL 51
           L+ QVSHGAIQFTVYEELRK+IANSRSKGTRVDAQSSGELL
Sbjct: 177 LMLQVSHGAIQFTVYEELRKIIANSRSKGTRVDAQSSGELL 217

The following BLAST results are available for this feature:

BLAST of Pay0005798.1 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0005798.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CS94	4.2e-18	100.00	folate transporter 1, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103504213...	[more]
A0A5D3CM20	2.9e-11	95.12	Folate transporter 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255...	[more]
A0A5D3BGA3	2.9e-11	95.12	Putative receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3B2N4	3.8e-11	92.68	folate transporter 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7SHT3	3.8e-11	92.68	Folate transporter 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold253...	[more]

BLAST of Pay0005798.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466887.1	8.7e-18	100.00	PREDICTED: folate transporter 1, chloroplastic-like [Cucumis melo]	[more]
TYK12585.1	6.1e-11	95.12	folate transporter 1 [Cucumis melo var. makuwa]	[more]
TYJ98104.1	6.1e-11	95.12	putative receptor-like protein kinase [Cucumis melo var. makuwa]	[more]
XP_008440771.1	7.9e-11	92.68	PREDICTED: folate transporter 1, chloroplastic isoform X1 [Cucumis melo] >XP_016...	[more]
KAA0025710.1	7.9e-11	92.68	folate transporter 1 [Cucumis melo var. makuwa]	[more]

BLAST of Pay0005798.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0005798	Pay0005798	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0005798.1-cds	Pay0005798.1-cds-chr09:13237696..13237878	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0005798.1-exon	Pay0005798.1-exon-chr09:13237696..13238009	exon
Pay0005798.1-exon	Pay0005798.1-exon-chr09:13238099..13238372	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0005798.1-three_prime_utr	Pay0005798.1-three_prime_utr-chr09:13237879..13238009	three_prime_UTR
Pay0005798.1-three_prime_utr	Pay0005798.1-three_prime_utr-chr09:13238099..13238372	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0005798.1	Pay0005798.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006862	nucleotide transport
biological_process	GO:0016310	phosphorylation
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016301	kinase activity