Pay0004709.1 (mRNA) Melon (Payzawat) v1

Overview


Name	Pay0004709.1
Type	mRNA
Organism	Cucumis melo L. var. inodorus cv. Payzawat (Melon (Payzawat) v1)
Description	Ribonuclease H
Location	chr06: 30623339 .. 30623515 (+)
Sequence length	177
RNA-Seq Expression	Pay0004709.1
Synteny	Pay0004709.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAGCTATGTGAAAATTTTAACTTCAAACAATACAAGTCTTCTATGTACAATATCGCAGCAAATGGATTGGCAGAAGCATTCAACAAAACTTTATGCAGTCTACTGAAAAAGGTGGTCTCCAAGACAAAAAGAGATTGGCAAGAAGAGATTGGGGAAGCATTGTGGGCCTAA

mRNA sequence

ATGGACAAGCTATGTGAAAATTTTAACTTCAAACAATACAAGTCTTCTATGTACAATATCGCAGCAAATGGATTGGCAGAAGCATTCAACAAAACTTTATGCAGTCTACTGAAAAAGGTGGTCTCCAAGACAAAAAGAGATTGGCAAGAAGAGATTGGGGAAGCATTGTGGGCCTAA

Coding sequence (CDS)

ATGGACAAGCTATGTGAAAATTTTAACTTCAAACAATACAAGTCTTCTATGTACAATATCGCAGCAAATGGATTGGCAGAAGCATTCAACAAAACTTTATGCAGTCTACTGAAAAAGGTGGTCTCCAAGACAAAAAGAGATTGGCAAGAAGAGATTGGGGAAGCATTGTGGGCCTAA

Protein sequence

MDKLCENFNFKQYKSSMYNIAANGLAEAFNKTLCSLLKKVVSKTKRDWQEEIGEALWA

Homology

[Close]

BLAST of Pay0004709.1 vs. ExPASy TrEMBL
Match: A0A5D3E2D0 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00610 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.2e-23
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   MDKLCENFNFKQYKSSMYNIAANGLAEAFNKTLCSLLKKVVSKTKRDWQEEIGEALWA 59
           MDKLCE FNFKQYKSSMYN+AANGLAEAFNKTLCSLLKKVVSKTKRDWQE+IG+ALWA
Sbjct: 118 MDKLCEKFNFKQYKSSMYNVAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGKALWA 175

[Close]

BLAST of Pay0004709.1 vs. ExPASy TrEMBL
Match: A0A5A7V3K3 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001490 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.2e-23
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1   MDKLCENFNFKQYKSSMYNIAANGLAEAFNKTLCSLLKKVVSKTKRDWQEEIGEALWA 59
           MDKLCE FNFKQYKSSMYN AANGLAEAFNKTLCSLLKKVVSKTKRDWQE+IGEALWA
Sbjct: 680 MDKLCEKFNFKQYKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWA 737

[Close]

BLAST of Pay0004709.1 vs. ExPASy TrEMBL
Match: A0A5D3BTY1 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.2e-23
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1    MDKLCENFNFKQYKSSMYNIAANGLAEAFNKTLCSLLKKVVSKTKRDWQEEIGEALWA 59
            MDKLCE FNFKQYKSSMYN AANGLAEAFNKTLCSLLKKVVSKTKRDWQE+IGEALWA
Sbjct: 1532 MDKLCEKFNFKQYKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWA 1589

[Close]

BLAST of Pay0004709.1 vs. ExPASy TrEMBL
Match: A0A5A7SLL7 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00390 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.2e-23
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1    MDKLCENFNFKQYKSSMYNIAANGLAEAFNKTLCSLLKKVVSKTKRDWQEEIGEALWA 59
            MDKLCE FNFKQYKSSMYN AANGLAEAFNKTLCSLLKKVVSKTKRDWQE+IGEALWA
Sbjct: 1481 MDKLCEKFNFKQYKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWA 1538

[Close]

BLAST of Pay0004709.1 vs. ExPASy TrEMBL
Match: A0A5A7UID6 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00130 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.2e-23
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1    MDKLCENFNFKQYKSSMYNIAANGLAEAFNKTLCSLLKKVVSKTKRDWQEEIGEALWA 59
            MDKLCE FNFKQYKSSMYN AANGLAEAFNKTLCSLLKKVVSKTKRDWQE+IGEALWA
Sbjct: 1208 MDKLCEKFNFKQYKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWA 1265

[Close]

BLAST of Pay0004709.1 vs. NCBI nr
Match: TYK02262.1 (uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 6.7e-23
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1    MDKLCENFNFKQYKSSMYNIAANGLAEAFNKTLCSLLKKVVSKTKRDWQEEIGEALWA 59
            MDKLCE FNFKQYKSSMYN AANGLAEAFNKTLCSLLKKVVSKTKRDWQE+IGEALWA
Sbjct: 1532 MDKLCEKFNFKQYKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWA 1589

[Close]

BLAST of Pay0004709.1 vs. NCBI nr
Match: KAA0053465.1 (uncharacterized protein E6C27_scaffold190G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 6.7e-23
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1    MDKLCENFNFKQYKSSMYNIAANGLAEAFNKTLCSLLKKVVSKTKRDWQEEIGEALWA 59
            MDKLCE FNFKQYKSSMYN AANGLAEAFNKTLCSLLKKVVSKTKRDWQE+IGEALWA
Sbjct: 1208 MDKLCEKFNFKQYKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWA 1265

[Close]

BLAST of Pay0004709.1 vs. NCBI nr
Match: KAA0066957.1 (uncharacterized protein E6C27_scaffold550G00970 [Cucumis melo var. makuwa] >TYK30237.1 uncharacterized protein E5676_scaffold595G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 6.7e-23
Identity = 54/58 (93.10%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   MDKLCENFNFKQYKSSMYNIAANGLAEAFNKTLCSLLKKVVSKTKRDWQEEIGEALWA 59
           MDKLCE FNFKQYKSSMYN+AANGLAEAFNKTLCSLLKKVVSKTKRDWQE+IG+ALWA
Sbjct: 118 MDKLCEKFNFKQYKSSMYNVAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGKALWA 175

[Close]

BLAST of Pay0004709.1 vs. NCBI nr
Match: KAA0060610.1 (uncharacterized protein E6C27_scaffold22G004880 [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 6.7e-23
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1   MDKLCENFNFKQYKSSMYNIAANGLAEAFNKTLCSLLKKVVSKTKRDWQEEIGEALWA 59
           MDKLCE FNFKQYKSSMYN AANGLAEAFNKTLCSLLKKVVSKTKRDWQE+IGEALWA
Sbjct: 427 MDKLCEKFNFKQYKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWA 484

[Close]

BLAST of Pay0004709.1 vs. NCBI nr
Match: KAA0050334.1 (uncharacterized protein E6C27_scaffold88G00600 [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 6.7e-23
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1   MDKLCENFNFKQYKSSMYNIAANGLAEAFNKTLCSLLKKVVSKTKRDWQEEIGEALWA 59
           MDKLCE FNFKQYKSSMYN AANGLAEAFNKTLCSLLKKVVSKTKRDWQE+IGEALWA
Sbjct: 649 MDKLCEKFNFKQYKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWA 706

The following BLAST results are available for this feature:

BLAST of Pay0004709.1 vs.


Match Name	E-value	Identity	Description

BLAST of Pay0004709.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E2D0	3.2e-23	93.10	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7V3K3	3.2e-23	94.83	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00149...	[more]
A0A5D3BTY1	3.2e-23	94.83	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 ...	[more]
A0A5A7SLL7	3.2e-23	94.83	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G0039...	[more]
A0A5A7UID6	3.2e-23	94.83	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00130...	[more]

BLAST of Pay0004709.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02262.1	6.7e-23	94.83	uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]	[more]
KAA0053465.1	6.7e-23	94.83	uncharacterized protein E6C27_scaffold190G00130 [Cucumis melo var. makuwa]	[more]
KAA0066957.1	6.7e-23	93.10	uncharacterized protein E6C27_scaffold550G00970 [Cucumis melo var. makuwa] >TYK3...	[more]
KAA0060610.1	6.7e-23	94.83	uncharacterized protein E6C27_scaffold22G004880 [Cucumis melo var. makuwa]	[more]
KAA0050334.1	6.7e-23	94.83	uncharacterized protein E6C27_scaffold88G00600 [Cucumis melo var. makuwa]	[more]

BLAST of Pay0004709.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Payzawat) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..58 e-value: 8.2E-10 score: 40.3
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..58

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Pay0004709	Pay0004709	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0004709.1-cds	Pay0004709.1-cds-chr06:30623339..30623515	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Pay0004709.1-exon	Pay0004709.1-exon-chr06:30623339..30623515	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Pay0004709.1	Pay0004709.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity