PI0028346.2 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0028346.2
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Translocase subunit seca
Location	chr09: 14767858 .. 14769370 (-)
Sequence length	1428
RNA-Seq Expression	PI0028346.2
Synteny	PI0028346.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAGATATTACCCTTTTTTTCCATTCTTTCTCTCTCTCCATTTTCATTTTATTAACAAATCCGATTCGCCTGTCTCTTTGTCCCATTCTCTCTTCTTTATGTTCTTGTTATAACTCATAACTCGCGCTCCTCCTCCTCTCCTTTTTTCTACCAACCACAATCTTCTCTCTTCTTCTTCAGGTTTAATCTCTATATCACTTTTGTTTTTAGCTTCCATGCTCTTTCACTTCAAACTTTCAATTTTTAGATCTATGTATTTACAGGATTGTGTTTTCCACTTTTTTTTGGGGAAAGATGTTTTTGCTAGATCTATTGTGAATTGGGTTTTTTTTCCCTGTTTGTTTAAAAGGTTTGTTTTGTCTTGTCTGTATAGGCAAACAGAAAACTAAAATTAGAAGAAATGAATTGGGTTTGTGAAGAGAAGCGAAGCGCCGCCGCCGCCGCCACTGACCGCCGTGAGCGAATTGTTTGTCCAAAACCCCGCCGTCTCGGTCTCATGAATGATACTTGCAACGATAACCCAGTTAGACACCGGTTTGATTCAGATGCTCTGGATCTCATCTTCTTAAAGGTACTTGATTTTCGCTAAGAGATGAATTTTATCCAATAACAGAAGAGGATTGATGAATATTTTGGTTTTGTGTGTGTGTTTTTAGGGTGGTTGTGGATTGGAGAATTTTAACAGTAGTAATACACAATTTGCCTCGTCGCCGCCGTATTTTTGTGGATCGCCGCCGAGCAGAGTAGCTAACCCATTAATCCAAGACGCTCGATTTGGGGATGAGAAGCCAAAGCTACTCCCCCTCTTCGCGCCGGCGGTTTCTCCTCCGTTGTCTCCACCGCCGTCAGCCGGTCGGAAAGGTGGATGTGTCCGGGTTAATTTTGGTAACAACCCAGCGGTGAGGATCGAAGGGTTTGATTGCCGCCTCGACAGGGAGAGGCGAAACCGCAGCATCCCTGCTCTGGCTTAAAAACCCTATCCGAGCCGAGCCGATTGAGCAATGATCATGAAGAAAACAAACACATGGATTTAATTTCTTTTCCCCACATTCAAATTTAAAATATTAAAGTGAAATTTTGAAAGAAAAAAAACCTTTTTGACCAAAACACCATTATTGTAAATAATGTGAAAAGGAAATCCAAGTAAATATTATGTCAAAGAAAAAAAAGGCCTTGTTAGGTTTCTTTCTCTATTTAGTTGAGTTGAGGTTTGAGAGTCCTTATTTGACCATATTGAAGAATAAAAGGCAGAGGAAGAGGGAGATTATTCATAGGTTTTTGTGAATTGAGAGAATTACTTTGCTCTTTCTCTTTCTCTTCTCTATTTTGTAACATATGTAAGTTTTTTTTTCTTTAGGAGTGTCCAAGATTGTTTCTTTGTGTAGCTCAAGGACAAACTATTTGTTGCAGCTTGAGAATGAGAAAACATGTACAAATTGAAGCTGCATAAATTCAATATTAATCATGTAAATTTTTAATGTTTTATATATATATATACTTTTCCTTCTCTTTTT

mRNA sequence

TAGATATTACCCTTTTTTTCCATTCTTTCTCTCTCTCCATTTTCATTTTATTAACAAATCCGATTCGCCTGTCTCTTTGTCCCATTCTCTCTTCTTTATGTTCTTGTTATAACTCATAACTCGCGCTCCTCCTCCTCTCCTTTTTTCTACCAACCACAATCTTCTCTCTTCTTCTTCAGGTTTAATCTCTATATCACTTTTGTTTTTAGCTTCCATGCTCTTTCACTTCAAACTTTCAATTTTTAGATCTATGTATTTACAGGATTGTGTTTTCCACTTTTTTTTGGGGAAAGATGTTTTTGCTAGATCTATTGTGAATTGGGTTTTTTTTCCCTGTTTGTTTAAAAGGTTTGTTTTGTCTTGTCTGTATAGGCAAACAGAAAACTAAAATTAGAAGAAATGAATTGGGTTTGTGAAGAGAAGCGAAGCGCCGCCGCCGCCGCCACTGACCGCCGTGAGCGAATTGTTTGTCCAAAACCCCGCCGTCTCGGTCTCATGAATGATACTTGCAACGATAACCCAGTTAGACACCGGTTTGATTCAGATGCTCTGGATCTCATCTTCTTAAAGGGTGGTTGTGGATTGGAGAATTTTAACAGTAGTAATACACAATTTGCCTCGTCGCCGCCGTATTTTTGTGGATCGCCGCCGAGCAGAGTAGCTAACCCATTAATCCAAGACGCTCGATTTGGGGATGAGAAGCCAAAGCTACTCCCCCTCTTCGCGCCGGCGGTTTCTCCTCCGTTGTCTCCACCGCCGTCAGCCGGTCGGAAAGGTGGATGTGTCCGGGTTAATTTTGGTAACAACCCAGCGGTGAGGATCGAAGGGTTTGATTGCCGCCTCGACAGGGAGAGGCGAAACCGCAGCATCCCTGCTCTGGCTTAAAAACCCTATCCGAGCCGAGCCGATTGAGCAATGATCATGAAGAAAACAAACACATGGATTTAATTTCTTTTCCCCACATTCAAATTTAAAATATTAAAGTGAAATTTTGAAAGAAAAAAAACCTTTTTGACCAAAACACCATTATTGTAAATAATGTGAAAAGGAAATCCAAGTAAATATTATGTCAAAGAAAAAAAAGGCCTTGTTAGGTTTCTTTCTCTATTTAGTTGAGTTGAGGTTTGAGAGTCCTTATTTGACCATATTGAAGAATAAAAGGCAGAGGAAGAGGGAGATTATTCATAGGTTTTTGTGAATTGAGAGAATTACTTTGCTCTTTCTCTTTCTCTTCTCTATTTTGTAACATATGTAAGTTTTTTTTTCTTTAGGAGTGTCCAAGATTGTTTCTTTGTGTAGCTCAAGGACAAACTATTTGTTGCAGCTTGAGAATGAGAAAACATGTACAAATTGAAGCTGCATAAATTCAATATTAATCATGTAAATTTTTAATGTTTTATATATATATATACTTTTCCTTCTCTTTTT

Coding sequence (CDS)

ATGAATTGGGTTTGTGAAGAGAAGCGAAGCGCCGCCGCCGCCGCCACTGACCGCCGTGAGCGAATTGTTTGTCCAAAACCCCGCCGTCTCGGTCTCATGAATGATACTTGCAACGATAACCCAGTTAGACACCGGTTTGATTCAGATGCTCTGGATCTCATCTTCTTAAAGGGTGGTTGTGGATTGGAGAATTTTAACAGTAGTAATACACAATTTGCCTCGTCGCCGCCGTATTTTTGTGGATCGCCGCCGAGCAGAGTAGCTAACCCATTAATCCAAGACGCTCGATTTGGGGATGAGAAGCCAAAGCTACTCCCCCTCTTCGCGCCGGCGGTTTCTCCTCCGTTGTCTCCACCGCCGTCAGCCGGTCGGAAAGGTGGATGTGTCCGGGTTAATTTTGGTAACAACCCAGCGGTGAGGATCGAAGGGTTTGATTGCCGCCTCGACAGGGAGAGGCGAAACCGCAGCATCCCTGCTCTGGCTTAA

Protein sequence

MNWVCEEKRSAAAAATDRRERIVCPKPRRLGLMNDTCNDNPVRHRFDSDALDLIFLKGGCGLENFNSSNTQFASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFAPAVSPPLSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

Homology

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BLAST of PI0028346.2 vs. ExPASy TrEMBL
Match: A0A0A0KRF1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G373190 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.2e-81
Identity = 147/161 (91.30%), Postives = 152/161 (94.41%), Query Frame = 0


Query: 1   MNWVCEEKRSAAAAATDRRERIVCPKPRRLGLMNDTCNDNPVRHRFDSDALDLIFLKGGC 60
           MNWVCEE ++   AATDRRERIVCPKPRRLGL+NDTCNDNP RHRFDSDALDL+FLKGGC
Sbjct: 1   MNWVCEEMQT---AATDRRERIVCPKPRRLGLINDTCNDNPFRHRFDSDALDLLFLKGGC 60

Query: 61  GLENFNSSNTQFASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFAPAVSPPLSPPP 120
           GLENFNSSN Q ASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLF+PA SPPLSPPP
Sbjct: 61  GLENFNSSNAQLASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFSPAASPPLSPPP 120

Query: 121 SAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA 162
           SAGRKGGCVRVNFG NPAVRIEGFDCRLDRERRNRSIPALA
Sbjct: 121 SAGRKGGCVRVNFGKNPAVRIEGFDCRLDRERRNRSIPALA 158

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BLAST of PI0028346.2 vs. ExPASy TrEMBL
Match: A0A1S3CR46 (uncharacterized protein LOC103503385 OS=Cucumis melo OX=3656 GN=LOC103503385 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.6e-80
Identity = 147/161 (91.30%), Postives = 151/161 (93.79%), Query Frame = 0


Query: 1   MNWVCEEKRSAAAAATDRRERIVCPKPRRLGLMNDTCNDNPVRHRFDSDALDLIFLKGGC 60
           MNWVCEE RS   AATDRRERIVCPKPRRLGL+NDTCNDNP RHRFDSDA+DL+FLKGGC
Sbjct: 1   MNWVCEEMRS---AATDRRERIVCPKPRRLGLINDTCNDNPFRHRFDSDAMDLLFLKGGC 60

Query: 61  GLENFNSSNTQFASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFAPAVSPPLSPPP 120
           GLE FNSSNTQ ASS PYFCGSPPSRVANPLIQDARFGDEKPKLLPLF+ A SPPLSPPP
Sbjct: 61  GLEKFNSSNTQLASSTPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFSTAASPPLSPPP 120

Query: 121 SAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA 162
           SAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
Sbjct: 121 SAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA 158

[Close]

BLAST of PI0028346.2 vs. ExPASy TrEMBL
Match: A0A5D3C147 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2119G00810 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.1e-76
Identity = 138/149 (92.62%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 13  AAATDRRERIVCPKPRRLGLMNDTCNDNPVRHRFDSDALDLIFLKGGCGLENFNSSNTQF 72
           +AATDRRERIVCPKPRRLGL+NDTCNDNP RHRFDSDA+DL+FLKGGCGLE FNSSNTQ 
Sbjct: 3   SAATDRRERIVCPKPRRLGLINDTCNDNPFRHRFDSDAMDLLFLKGGCGLEKFNSSNTQL 62

Query: 73  ASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFAPAVSPPLSPPPSAGRKGGCVRVN 132
           ASS PYFCGSPPSRVANPLIQDARFGDEKPKLLPLF+ A SPPLSPPPSAGRKGGCVRVN
Sbjct: 63  ASSTPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFSTAASPPLSPPPSAGRKGGCVRVN 122

Query: 133 FGNNPAVRIEGFDCRLDRERRNRSIPALA 162
           FGNNPAVRIEGFDCRLDRERRNRSIPALA
Sbjct: 123 FGNNPAVRIEGFDCRLDRERRNRSIPALA 151

[Close]

BLAST of PI0028346.2 vs. ExPASy TrEMBL
Match: A0A6J1E6Z2 (uncharacterized protein LOC111431174 OS=Cucurbita moschata OX=3662 GN=LOC111431174 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 3.0e-63
Identity = 123/154 (79.87%), Postives = 133/154 (86.36%), Query Frame = 0


Query: 13  AAATDRRERIVCPKPRRLGLMNDTCNDNPVRHRFDS----DALDLIFLKGGCGLENFNSS 72
           AA TDRRER+VCPKPRRLGL+N T NDNP RHRFDS    DALDL+F KGGC LENFNSS
Sbjct: 20  AADTDRRERLVCPKPRRLGLINTTVNDNPFRHRFDSVAANDALDLLFFKGGCDLENFNSS 79

Query: 73  NTQFASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFAPAVS-PPLSPPPSAGRKGG 132
           +TQ ASSPPY CG+PPSRVANPLIQDARFG+EKPK+LP+F+P V+ PP SPPPS  R GG
Sbjct: 80  STQLASSPPYLCGTPPSRVANPLIQDARFGNEKPKMLPVFSPEVAPPPYSPPPSTDRNGG 139

Query: 133 CVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA 162
            VR NFGN PAVRIEGFDCRLDRERRNRSIPALA
Sbjct: 140 WVRPNFGNIPAVRIEGFDCRLDRERRNRSIPALA 173

[Close]

BLAST of PI0028346.2 vs. ExPASy TrEMBL
Match: A0A6J1I2X1 (uncharacterized protein LOC111470460 OS=Cucurbita maxima OX=3661 GN=LOC111470460 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.5e-62
Identity = 122/154 (79.22%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 13  AAATDRRERIVCPKPRRLGLMNDTCNDNPVRHRFDS----DALDLIFLKGGCGLENFNSS 72
           AA TDRRER+VCPKPRRLGL+N T NDNP RHRFDS    DALDL+F KGGC LENF SS
Sbjct: 20  AADTDRRERLVCPKPRRLGLINATANDNPFRHRFDSIAANDALDLLFFKGGCDLENFKSS 79

Query: 73  NTQFASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFAPAVS-PPLSPPPSAGRKGG 132
           +TQ ASSPPY CG+PPSRVANPLIQDARFG+EKPK+LP+F+P V+ PP SPPPS  R GG
Sbjct: 80  STQLASSPPYLCGTPPSRVANPLIQDARFGNEKPKMLPVFSPEVAPPPYSPPPSTDRNGG 139

Query: 133 CVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA 162
            VR NFGN PAVRIEGFDCRLDRERRNRSIPALA
Sbjct: 140 WVRPNFGNIPAVRIEGFDCRLDRERRNRSIPALA 173

[Close]

BLAST of PI0028346.2 vs. NCBI nr
Match: XP_004140334.1 (uncharacterized protein LOC101221533 [Cucumis sativus] >KGN50957.1 hypothetical protein Csa_007795 [Cucumis sativus])

HSP 1 Score: 310.8 bits (795), Expect = 6.7e-81
Identity = 147/161 (91.30%), Postives = 152/161 (94.41%), Query Frame = 0


Query: 1   MNWVCEEKRSAAAAATDRRERIVCPKPRRLGLMNDTCNDNPVRHRFDSDALDLIFLKGGC 60
           MNWVCEE ++   AATDRRERIVCPKPRRLGL+NDTCNDNP RHRFDSDALDL+FLKGGC
Sbjct: 1   MNWVCEEMQT---AATDRRERIVCPKPRRLGLINDTCNDNPFRHRFDSDALDLLFLKGGC 60

Query: 61  GLENFNSSNTQFASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFAPAVSPPLSPPP 120
           GLENFNSSN Q ASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLF+PA SPPLSPPP
Sbjct: 61  GLENFNSSNAQLASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFSPAASPPLSPPP 120

Query: 121 SAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA 162
           SAGRKGGCVRVNFG NPAVRIEGFDCRLDRERRNRSIPALA
Sbjct: 121 SAGRKGGCVRVNFGKNPAVRIEGFDCRLDRERRNRSIPALA 158

[Close]

BLAST of PI0028346.2 vs. NCBI nr
Match: XP_008465783.1 (PREDICTED: uncharacterized protein LOC103503385 [Cucumis melo] >XP_016903435.1 PREDICTED: uncharacterized protein LOC103503385 [Cucumis melo])

HSP 1 Score: 308.5 bits (789), Expect = 3.3e-80
Identity = 147/161 (91.30%), Postives = 151/161 (93.79%), Query Frame = 0


Query: 1   MNWVCEEKRSAAAAATDRRERIVCPKPRRLGLMNDTCNDNPVRHRFDSDALDLIFLKGGC 60
           MNWVCEE RS   AATDRRERIVCPKPRRLGL+NDTCNDNP RHRFDSDA+DL+FLKGGC
Sbjct: 1   MNWVCEEMRS---AATDRRERIVCPKPRRLGLINDTCNDNPFRHRFDSDAMDLLFLKGGC 60

Query: 61  GLENFNSSNTQFASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFAPAVSPPLSPPP 120
           GLE FNSSNTQ ASS PYFCGSPPSRVANPLIQDARFGDEKPKLLPLF+ A SPPLSPPP
Sbjct: 61  GLEKFNSSNTQLASSTPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFSTAASPPLSPPP 120

Query: 121 SAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA 162
           SAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
Sbjct: 121 SAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA 158

[Close]

BLAST of PI0028346.2 vs. NCBI nr
Match: XP_038906747.1 (uncharacterized protein LOC120092671 [Benincasa hispida])

HSP 1 Score: 299.3 bits (765), Expect = 2.0e-77
Identity = 141/161 (87.58%), Postives = 148/161 (91.93%), Query Frame = 0


Query: 1   MNWVCEEKRSAAAAATDRRERIVCPKPRRLGLMNDTCNDNPVRHRFDSDALDLIFLKGGC 60
           MNWVCEE  +AA    DRRER+VCPKPRRLGLMND  NDNP RHRFDSDALDL+F KGGC
Sbjct: 1   MNWVCEEMMTAA----DRRERLVCPKPRRLGLMNDAGNDNPFRHRFDSDALDLLFFKGGC 60

Query: 61  GLENFNSSNTQFASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFAPAVSPPLSPPP 120
           GLENFNSS+TQ ASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLF+PA SPP SPPP
Sbjct: 61  GLENFNSSSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFSPAASPPSSPPP 120

Query: 121 SAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA 162
           SAGRKGGCVR+NFGNNPAVRIEGFDCRLDRERRNRS+PALA
Sbjct: 121 SAGRKGGCVRINFGNNPAVRIEGFDCRLDRERRNRSVPALA 157

[Close]

BLAST of PI0028346.2 vs. NCBI nr
Match: KAA0047427.1 (uncharacterized protein E6C27_scaffold498G00180 [Cucumis melo var. makuwa] >TYK04136.1 uncharacterized protein E5676_scaffold2119G00810 [Cucumis melo var. makuwa])

HSP 1 Score: 293.9 bits (751), Expect = 8.5e-76
Identity = 138/149 (92.62%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 13  AAATDRRERIVCPKPRRLGLMNDTCNDNPVRHRFDSDALDLIFLKGGCGLENFNSSNTQF 72
           +AATDRRERIVCPKPRRLGL+NDTCNDNP RHRFDSDA+DL+FLKGGCGLE FNSSNTQ 
Sbjct: 3   SAATDRRERIVCPKPRRLGLINDTCNDNPFRHRFDSDAMDLLFLKGGCGLEKFNSSNTQL 62

Query: 73  ASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFAPAVSPPLSPPPSAGRKGGCVRVN 132
           ASS PYFCGSPPSRVANPLIQDARFGDEKPKLLPLF+ A SPPLSPPPSAGRKGGCVRVN
Sbjct: 63  ASSTPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFSTAASPPLSPPPSAGRKGGCVRVN 122

Query: 133 FGNNPAVRIEGFDCRLDRERRNRSIPALA 162
           FGNNPAVRIEGFDCRLDRERRNRSIPALA
Sbjct: 123 FGNNPAVRIEGFDCRLDRERRNRSIPALA 151

[Close]

BLAST of PI0028346.2 vs. NCBI nr
Match: KAG7032498.1 (hypothetical protein SDJN02_06547 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252.7 bits (644), Expect = 2.2e-63
Identity = 124/154 (80.52%), Postives = 134/154 (87.01%), Query Frame = 0


Query: 13  AAATDRRERIVCPKPRRLGLMNDTCNDNPVRHRFDS----DALDLIFLKGGCGLENFNSS 72
           AA TDRRER+VCPKPRRLGL+N T NDNP RHRFDS    DALDL+FLKGGC LENFNSS
Sbjct: 20  AADTDRRERLVCPKPRRLGLINTTVNDNPFRHRFDSVAANDALDLLFLKGGCDLENFNSS 79

Query: 73  NTQFASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFAPAVS-PPLSPPPSAGRKGG 132
           +TQ ASSPPY CG+PPSRVANPLIQDARFG+EKPK+LP+F+P V+ PP SPPPS  R GG
Sbjct: 80  STQLASSPPYLCGTPPSRVANPLIQDARFGNEKPKMLPVFSPEVAPPPYSPPPSTDRNGG 139

Query: 133 CVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA 162
            VR NFGN PAVRIEGFDCRLDRERRNRSIPALA
Sbjct: 140 WVRPNFGNIPAVRIEGFDCRLDRERRNRSIPALA 173

[Close]

BLAST of PI0028346.2 vs. TAIR 10
Match: AT1G68490.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-31
Identity = 83/172 (48.26%), Postives = 105/172 (61.05%), Query Frame = 0


Query: 9   RSAAAAATDR-RERIVCPKPRRLGLMNDTCNDNPVR--------------HRFDSDALDL 68
           RS++ +  +R +  +VCPKPRR+GL N+  + +P R               + ++D LD+
Sbjct: 18  RSSSVSVVERDQTTVVCPKPRRIGLRNN--HHHPSRSLRCYFSHQLELCESKAETDILDI 77

Query: 69  IFLKGGCGLENFNSSNTQFASSP-PYFCGSPPSRVANPLIQDARFGDEKPKLLPLFAP-- 128
           I  K G G E  N    Q   SP P+ CGSPPSRVANPL QDARF DE   +  +  P  
Sbjct: 78  ILTKDGYGAEQVNK---QVIDSPSPFLCGSPPSRVANPLTQDARFRDEIVSVSSVIPPQL 137

Query: 129 AVSPPLSPPPSAGRKGGC-VRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA 162
            + P  SP  S+GRKGGC VR NFGN+P VR+EGFDC LDR+ RN SIPALA
Sbjct: 138 GLPPSSSPSSSSGRKGGCVVRGNFGNSPKVRVEGFDC-LDRDSRNCSIPALA 183

[Close]

BLAST of PI0028346.2 vs. TAIR 10
Match: AT5G16110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 121.3 bits (303), Expect = 7.0e-28
Identity = 76/161 (47.20%), Postives = 95/161 (59.01%), Query Frame = 0


Query: 17  DRRERIVCPKPRRLGLMNDTCNDNPVRHRFDSDALDLIFLKGGCGL-------ENFNSSN 76
           DR++ +VCPKPRR+GL+ +     P+R      A DL   K G  L       E+  +  
Sbjct: 87  DRKDLVVCPKPRRVGLLANNV-IRPLRLHMSQAAADLCDSKAGAELLEIIRRKEDNGTIG 146

Query: 77  TQFASSPPYFCGSPPSRVANPLIQDARFGDEK--------PKLLPLFAPAVSPPLSPPPS 136
              +SSPPYF GSPPSR ANPL QDARF DEK        P L P  A     P S   S
Sbjct: 147 QLLSSSPPYFPGSPPSRAANPLAQDARFRDEKLNPISPNSPFLQPYSATGFPSPSSSSSS 206

Query: 137 AGRKGGCVRVNFG-NNPAVRIEGFDCRLDRERRNRSIPALA 162
           +  + GCVR+ FG N+PAVR+EGFDC L+R+R+N SIPA+A
Sbjct: 207 SSSR-GCVRMKFGLNSPAVRVEGFDC-LNRDRQNSSIPAMA 244

[Close]

BLAST of PI0028346.2 vs. TAIR 10
Match: AT1G13390.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68490.1); Has 114 Blast hits to 114 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 9.5e-25
Identity = 71/171 (41.52%), Postives = 98/171 (57.31%), Query Frame = 0


Query: 7   EKRSAAAAATDRRERIVCPKPRRLGLMNDTCNDN---PVRHRFD-------SDALDLIFL 66
           E+    AA +DRR+ ++CPKPRR+G +N   + +    + H+ +       S+ LD I  
Sbjct: 13  EEMRRNAAVSDRRDAVICPKPRRVGALNHHSSRSLRWQLNHQMELCESNSGSEILDFILT 72

Query: 67  KGGCGLENFNSSNTQFASSPP-YFCGSPPSRVANPLIQDARFGDEKPKLLPLFAPAVSPP 126
           KGG G        T+   +PP +F GSPPSRV+NPL +D+ F +E   LL + +P+ S P
Sbjct: 73  KGGGG--GGEQDQTRTVMTPPLFFTGSPPSRVSNPLTKDSLFREE---LLMVASPSPSTP 132

Query: 127 LS---PPPSAGRKGGCV--RVNFGNNPAVRIEGFDCRLDRERRNRSIPALA 162
            +    PPS+ R G CV    +FGNNP VR+ GFDC  DR   NRSI  LA
Sbjct: 133 RATKPQPPSSPRNGSCVMAATSFGNNPVVRVVGFDC--DRRSSNRSISTLA 176

[Close]

BLAST of PI0028346.2 vs. TAIR 10
Match: AT1G13390.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68490.1); Has 114 Blast hits to 114 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 9.5e-25
Identity = 71/171 (41.52%), Postives = 98/171 (57.31%), Query Frame = 0


Query: 7   EKRSAAAAATDRRERIVCPKPRRLGLMNDTCNDN---PVRHRFD-------SDALDLIFL 66
           E+    AA +DRR+ ++CPKPRR+G +N   + +    + H+ +       S+ LD I  
Sbjct: 13  EEMRRNAAVSDRRDAVICPKPRRVGALNHHSSRSLRWQLNHQMELCESNSGSEILDFILT 72

Query: 67  KGGCGLENFNSSNTQFASSPP-YFCGSPPSRVANPLIQDARFGDEKPKLLPLFAPAVSPP 126
           KGG G        T+   +PP +F GSPPSRV+NPL +D+ F +E   LL + +P+ S P
Sbjct: 73  KGGGG--GGEQDQTRTVMTPPLFFTGSPPSRVSNPLTKDSLFREE---LLMVASPSPSTP 132

Query: 127 LS---PPPSAGRKGGCV--RVNFGNNPAVRIEGFDCRLDRERRNRSIPALA 162
            +    PPS+ R G CV    +FGNNP VR+ GFDC  DR   NRSI  LA
Sbjct: 133 RATKPQPPSSPRNGSCVMAATSFGNNPVVRVVGFDC--DRRSSNRSISTLA 176

[Close]

BLAST of PI0028346.2 vs. TAIR 10
Match: AT3G02555.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G16110.1); Has 130 Blast hits to 130 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 109.0 bits (271), Expect = 3.6e-24
Identity = 76/160 (47.50%), Postives = 93/160 (58.13%), Query Frame = 0


Query: 6   EEKRSAAAAATDRRERIVCPKPRRLGLMNDTCNDNPVRHRFD-SDALDLIFLKGGCG-LE 65
           EE R      +   + +VCPKPRR   +       P R  F  S A D+   K G   L+
Sbjct: 15  EESRGFVPIYSHPVDSVVCPKPRRANNV-----IRPFRLHFSLSGADDVCDSKAGEDLLD 74

Query: 66  NFNSSNTQFASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFAPAVSPPLSPPPSAG 125
            F    +  + SPP+F GSPPSR ANPL QDARFGDEK   L   +P++SP L   PSA 
Sbjct: 75  IFRRKESVSSRSPPFFLGSPPSRAANPLAQDARFGDEK---LNTVSPSLSPLL---PSAS 134

Query: 126 R-KGGCVRVNFGNNPA-VRIEGFDCRLDRERRNRSIPALA 162
           R K GC R+ FG  PA VR+EGFDC L+R+R N SIPA+A
Sbjct: 135 RVKSGCGRMKFGVKPATVRVEGFDC-LNRDRPNSSIPAMA 162

The following BLAST results are available for this feature:

BLAST of PI0028346.2 vs.


Match Name	E-value	Identity	Description

BLAST of PI0028346.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRF1	3.2e-81	91.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G373190 PE=4 SV=1	[more]
A0A1S3CR46	1.6e-80	91.30	uncharacterized protein LOC103503385 OS=Cucumis melo OX=3656 GN=LOC103503385 PE=...	[more]
A0A5D3C147	4.1e-76	92.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1E6Z2	3.0e-63	79.87	uncharacterized protein LOC111431174 OS=Cucurbita moschata OX=3662 GN=LOC1114311...	[more]
A0A6J1I2X1	1.5e-62	79.22	uncharacterized protein LOC111470460 OS=Cucurbita maxima OX=3661 GN=LOC111470460...	[more]

BLAST of PI0028346.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140334.1	6.7e-81	91.30	uncharacterized protein LOC101221533 [Cucumis sativus] >KGN50957.1 hypothetical ...	[more]
XP_008465783.1	3.3e-80	91.30	PREDICTED: uncharacterized protein LOC103503385 [Cucumis melo] >XP_016903435.1 P...	[more]
XP_038906747.1	2.0e-77	87.58	uncharacterized protein LOC120092671 [Benincasa hispida]	[more]
KAA0047427.1	8.5e-76	92.62	uncharacterized protein E6C27_scaffold498G00180 [Cucumis melo var. makuwa] >TYK0...	[more]
KAG7032498.1	2.2e-63	80.52	hypothetical protein SDJN02_06547 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of PI0028346.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68490.1	1.4e-31	48.26	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G16110.1	7.0e-28	47.20	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G13390.1	9.5e-25	41.52	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G13390.2	9.5e-25	41.52	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G02555.1	3.6e-24	47.50	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33384:SF18	BNAA07G24630D PROTEIN	coord: 6..161
None	No IPR available	PANTHER	PTHR33384	EXPRESSED PROTEIN	coord: 6..161

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0028346	PI0028346	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0028346.2-exon	PI0028346.2-exon-chr09:14767858..14768715	exon
PI0028346.2-exon	PI0028346.2-exon-chr09:14768801..14769370	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0028346.2-three_prime_utr	PI0028346.2-three_prime_utr-chr09:14767858..14768400	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0028346.2-cds	PI0028346.2-cds-chr09:14768401..14768715	CDS
PI0028346.2-cds	PI0028346.2-cds-chr09:14768801..14768971	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0028346.2-five_prime_utr	PI0028346.2-five_prime_utr-chr09:14768972..14769370	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0028346.2	PI0028346.2-protein	polypeptide