PI0027538.1 (mRNA) Melon (PI 482460) v1

Overview
NamePI0027538.1
TypemRNA
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr06: 11783628 .. 11786129 (-)
Sequence length168
RNA-Seq ExpressionPI0027538.1
SyntenyPI0027538.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACGAAGATATATTCGAACCTTTTTGTATTGGAGATAGATTGAGATAGATGAAGATAAATGGAGATAGATGGAGATAGATGAGATAGATTTGGTTGTGGAACCGAAATGTTAAGCAACAAACGAAATGCGAAAAATAATTTATGTGGAAAAGAAGACGAAGAAGAATTTCAAAAGTTTGGTTGAAGAAGGTAGGTGGAAATGAACAATTGAAGAAGAAGATGTATGATGAAAATGATGTGAAGAAGATGAAGAAAGAGGAAAGGTTTGAAGAAGAGGATTCACCTTTTTTATATCACGTTGATTTGGATGATATTTTTGTAATTATGCGTGATTGGGCTTTTATAGGACTTTTCAAAACCATCATTTATTATGATATAAACGATCGTGTATACAGATTCTACGATCGTTTAGACTATATTATATGATCGTTTATGTCTGAAGCTTTCTCGTCATCATTTAGAGTTTATTATCCAATCGTTTAAATTTGAAGCATTTTTCCCTATCATTTTAAATGAACTACAGATCATGTATCATGATTGTTTAGAAGAAGATTACTCACGCGCTTGTAGTCGATTAATCGCGAGTTGATTGAGGTATTTTTGGTATTTCACATTGTGGGCCTGTGAGCTTTTTCCATTTTCAAAATTGTTCTGTACAATGTTAATATTACTAGTTTGTTATATTTTTTAAAAAACCCCTTAATAAAATTGTTAGACTATGCATTGTTTTTTTCCTTTCTCAAAGTGTTGTTTAAATTGAGTAATACCTTTAGCTTAGTTTAGAAAAGTTGAGTCGTTACAAAATGATTGACTTAAAAAAAAGAAATTGCATCAGATGACAAAAAAATTTAGAAAAAAACAGCCCATAGCATATATTTTTTTGCATATTGCAAATATGACAAATATGATAAGTGATTAGATATATCAAACGACTATTAGATGGTTATTAGAAGACTATTAGAGAGCTATCAATGATCCTATTATCATAAACTATTTTGCTATTTTTGTATGTACCCTAAAAAAATGCAGATTGATAGGGAGAAGAAGCAAAGAGATGAAAGAAAAAATTAGGGTGATTTTGTTAATTTCACAAGAGATGACGTAAAGACAATGCTAAATAAACGTTTATTTTCAAATCATAGATAAAATTTCATTAGGCGTTCTATTTTGAGCTATCCATGTCATTTTTCCACTAATGTGTATTAAATTATTTAAAGAATAAAAATAAATATGCAAAATATTATTTAAAACTAAATCTAAGTCAGTCCATTCAAGCATATATTTCAACTCATAAAAGATTTTTATTCTTTGCAAATTTTTTAGGTCCAAGATATGATTTTTTTTAGGAGAAAAAAAAAAAAAAAAAAAGTCAGATTCACTATTTTGTTCAAAGTAGGCTTCCACAAATGTACATGTGAAATTGCCATTTACATTGAGGAATAGAAAATTTTTCAAACAAACAAACAAGAAAAGGTTTAAAAGATTAAAAATTAAATTAAAATTAAAATAAAGAAACAAACAAAACAAATAATTTGGATCTGCCGTTCTTCGAGCAGATCAGATCCGGGGGTTCAAAATTCATCGTTCTACATCCTAATTTCCCCCATCGCCATTTTCGCAGCTTCAAAGGTAATTTTACTATATCCATCCTCTTTTTCTCTTTCCATTACAATATGTTTCACACTAACCTTTTTCTTCTTCTTCTATATTCTCTGTATCTGATTCTTCTCCATCCGGCTTTCTCTAATTTTCTTTTCCTATCTTGTTGATATATTGATTTTTAGATGCATTTATGATTCTTATTATTCAATTAAGAAATTTTGGAATTAGAAATGATCTTTGTGATCTCTGTTTCCGAGAAATGGAATATAATGTGGGTATATCGTTGGATTGTGTCTGGTTTAGCTGTATGTCAAGTTGGTGCTTGGGAACTAGTAACAACATCTTGTTCTTAGTTTTATAGTTGATTAGGTAATATTCAAGATTAAATATGGTGTGCGGTGGGTGGAAACATGGATCCATGGAGAGGGGAGTGAACAATGTAGTTATTGGAAGTTCATCATTTAGGAATTTGGAATCTGCATCTAATGAAATAAGAGTAATGTAATCTACGTTCTTTTGTAATTATTATATGTTGCTGTGCATTTCAGTTTCCTTCCTGATTATTATCTTTTGGTCTTTTAATGTTGTGTGTGTGTGAGTGAGGGCTTGAGGAAGGTTGACTGGTAGATCTTCCTGTTTCTGATATTGGATGGTATGATTTCTATGGATGAAGTATTGTCATATTGTATCTATGATTTCTGTTTGTCAACTAAAAGAGAGGGTTGGTTCCATTTCAGAGAAATGGTTGCCCATCTATAAATTGGAGCTAGCTCTTATACTGGTATTTGAGTGAAAGACACTGCCAGTTCGTTTGCTTCTGACTTATAACAAATTAACCTGCAGGCTGCAATTTTATAATTATTGGCGTTGCTGCTTACCTGAGCTTTACTAGTTAA

mRNA sequence

ATGAAACGAAGATATATTCGAACCTTTTTAGATGACGTAAAGACAATATCCGGGGGTTCAAAATTCATCGTTCTACATCCTAATTTCCCCCATCGCCATTTTCGCAGCTTCAAAGGCTGCAATTTTATAATTATTGGCGTTGCTGCTTACCTGAGCTTTACTAGTTAA

Coding sequence (CDS)

ATGAAACGAAGATATATTCGAACCTTTTTAGATGACGTAAAGACAATATCCGGGGGTTCAAAATTCATCGTTCTACATCCTAATTTCCCCCATCGCCATTTTCGCAGCTTCAAAGGCTGCAATTTTATAATTATTGGCGTTGCTGCTTACCTGAGCTTTACTAGTTAA

Protein sequence

MKRRYIRTFLDDVKTISGGSKFIVLHPNFPHRHFRSFKGCNFIIIGVAAYLSFTS
Homology
[Close]
BLAST of PI0027538.1 vs. ExPASy TrEMBL
Match: A0A0A0L8X8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186710 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-09
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 21 KFIVLHPNFPHRHFRSFKGCNFIIIGVAAYLSFTS 56
          KF VL PNFPHRHFRSF+GCNFIIIGVAAYLSF+S
Sbjct: 64 KFFVLRPNFPHRHFRSFEGCNFIIIGVAAYLSFSS 98

[Close]
BLAST of PI0027538.1 vs. NCBI nr
Match: KGN57444.1 (hypothetical protein Csa_010257 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 5.2e-09
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0 

Query: 21 KFIVLHPNFPHRHFRSFKGCNFIIIGVAAYLSFTS 56
          KF VL PNFPHRHFRSF+GCNFIIIGVAAYLSF+S
Sbjct: 64 KFFVLRPNFPHRHFRSFEGCNFIIIGVAAYLSFSS 98

The following BLAST results are available for this feature:
BLAST of PI0027538.1 vs.
Match NameE-valueIdentityDescription
BLAST of PI0027538.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8X82.5e-0988.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186710 PE=4 SV=1[more]
BLAST of PI0027538.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57444.15.2e-0988.57hypothetical protein Csa_010257 [Cucumis sativus][more]
BLAST of PI0027538.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
PI0027538PI0027538gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0027538.1-exonPI0027538.1-exon-chr06:11783628..11783680exon
PI0027538.1-exonPI0027538.1-exon-chr06:11784497..11784564exon
PI0027538.1-exonPI0027538.1-exon-chr06:11785014..11785031exon
PI0027538.1-exonPI0027538.1-exon-chr06:11786101..11786129exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0027538.1-cdsPI0027538.1-cds-chr06:11783628..11783680CDS
PI0027538.1-cdsPI0027538.1-cds-chr06:11784497..11784564CDS
PI0027538.1-cdsPI0027538.1-cds-chr06:11785014..11785031CDS
PI0027538.1-cdsPI0027538.1-cds-chr06:11786101..11786129CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
PI0027538.1PI0027538.1-proteinpolypeptide