PI0026753.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0026753.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr07: 15993432 .. 15996806 (+)
Sequence length	672
RNA-Seq Expression	PI0026753.1
Synteny	PI0026753.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTTGTAATCAATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCTTTGTTCGAAATGCACCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGTCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTAAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGACATGAGGCTATTAAATACGTTTATAATGCCCATATGAAGGAAGACCAATTTGTTAAAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCATCTTCATTTTCTAGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGGTCCTGTTGTTGCTGCTAAGGGCAAAGGGAAGGCTAAGGTAGCCGACAAGGGGAAGTGCTTCCACTGCAATATGGATGGACATTGGAAGAGAAACTGCCCCAAGTACCTTGCTGAGAAGAAAAAGGAAAAAGAAGGTAAATATGATTTACTTGTTTTAGAAATTTGTTTAGTGGAAAATGACCAAAATGCCTAGATACTTGATTCAGGAGCCACTAATCATGTTTCTTTTTCTTTACAGAAAACTAGTTCCTTCCAGCAGCTCGAGGAGGGTGAAATGACGCTCAAGGTTGGAACGGGAGACGCCATTTCAGCTTGTGCAGTGGGAGATGTGAAGTTGTTTTTTAGAAATAGATATTTAATCTTAGACAATTTGTATATAGTTCCTAAGATTAAAATGAATCTTGTATCTATTTTTTGTCTTCTTGAACAATGTTACTCTATAAATTTTTCTTTAAATGAAGCATTCATTTCTAAGAATGGTGTACACATTTGTTCAGCTAAGTTAGAAAACAACTTGTATGTATTAATACCTAACGAAGCAAAAGCAATTTTAAATCATGAGATGTTTAAAACTGCTAATACTCAAAATAAAAGGCAAAGAATTTCTCAAAATAACAATACTTATCTTTGGCATTTAAGATTAGGTCACATTAATCTTGATCGAATCGGGAGATTAGTAAAGAATGGACTTCTAAATGAGTTAGAAGATGATTCATTACCTCAATGTGAATCTTGTCTTGAAGGAAAAATGACTAAAAGACCTTTTACTAGAAAAGGTTATAGAGCCAAAGAGCCCCTATAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTGAAAGCTCGAGGAGGTTTCAAATACTTCATCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGTGTAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATCTGTTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAAGACTATATGATAGAACATGGAATTCAATCTCAACTCTCAGCACCAGGTACACCTCAACAAAATGGTGTATCAGAAAGGAGAAATAGAACCCTGTTAGACATGGTTCGTTCAATGATGAGCTATGCTCAATTGCCTAGCTCGTTTTGGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAACAATGTTCCCTCGAAGAGTGTTTCTGAAACACCTTTCGAGTTATGAAGAGGACGTAAACCTAGTTTAAGTCACTCCAGGATATGGGGTTGTCCAGCACACGTGCTAGTGACAAATCCCAAAAAGTTGGAACCTCGTTCAAGATTATGCCAATTTATTGGTTACCCTAAAGAAACGAGAGGTGGTCTATTCTTCGATCCACAAGAAAATAGAGTATTTGTATCAACAAATGCTACTTTCTTGGAAGAAGATCACATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGAATCAACAAGAGTTGTTGATGAAGCTGGTCCCTCATCAAGAGTTGATGAAACCAACGCATCAGGTCAGTCTCATCCTTCTCAATCGTTGAGATTGCCTCGACGCAGTGGGAGGATTGTATCACAACCTAACCGTTACTTGGGTTTAACTGAAACTCAGGTTGTCATACCAGATGATGGTGTTGAGGATCCATTGTCCTATAAACAGACAATGAATGATGTAGACAAAGACCAATGGGTCAAAGCCATGGACCTTGAAATGGAGTCTATGTACTTCAATTCAGTATGGGAGCTTGTAGATCTACCTGAAGGGGTGAAACCCATAGGGTGCAAATGAATCTATAAGAGAAAGAGAGATTCAGCTGGGAAGGTACAAATCTTCAAAGCTAGGCTTGTAGCAAAAGGGTACACCCAAAGGGAAGGGGTTGACTATGAGAAAACTTTTTTCCCTGTTGCTATGTTAAAGTCTATAAGGATTCTCTTGTCCATAGCCACATTTTATGATTATGAAATATGGCAAATGGATGTCAAGACTGCTTTTCTAAATGGCAATCTTGAAGAGAGTATCTTTATGTCTCAGCCCGAAGGGTTCATAACCCAAGGTCAGGAGCAAAAAGTTTGCAAGCTAAATCGATCCATTTATGGGTTGAAACAAGCATCTAGATCTTGGAACATTAGGTTTGATACCGCGATCAAATCTTATGGTTTTGACCAAAATGTTGATGAACCTTGTGTATAACAAAGGTAAAGTAGCTTTCTTAGTACTTTATGTGGATGATATCCTTCTCATTGGGAATGATATAGGATACCTAACTGACGTAAAAACTTGGCTAGCAGTCCAATTCCAAATGAAAGATTTGGGATGAGATCCAAATCATGAGGGATCGTAAGAACAAAACGCTAGCTCTGTCTCAAGCAACCTATATCGACAAAATGTTGATTCGATATTCGATGCAGAACTCCAAGAAGGGTTTATTACCTTTCAGACATGGGGTTCACTTGTCGAAGGAACAGTGTCCTAAGACACCTCAAGATGTTGAGGATATGAGACGTATTCCTTATGCCTCAGCTGTGGACAGCTTAATGTATGTTTGATAAGACTATTTTTTTAGGAAAATATCTATCTTAATTAATAATAATAAATTGCAAATACTTATTAATATTGCATTTTTGTACAGGAAATGACACAAAGCCCCTCTAA

mRNA sequence

ATGATTCTTGTAATCAATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCTTTGTTCGAAATGCACCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGTCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTAAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGACATGAGGCTATTAAATACGTTTATAATGCCCATATGAAGGAAGACCAATTTGTTAAAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCATCTTCATTTTCTAGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGGAAATGACACAAAGCCCCTCTAA

Coding sequence (CDS)

ATGATTCTTGTAATCAATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCTTTGTTCGAAATGCACCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGTCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTAAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGACATGAGGCTATTAAATACGTTTATAATGCCCATATGAAGGAAGACCAATTTGTTAAAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCATCTTCATTTTCTAGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGGAAATGACACAAAGCCCCTCTAA

Protein sequence

MILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFVKEHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSASSFSRTKKIQKKKGGKGKGNDTKPL

Homology

[Close]

BLAST of PI0026753.1 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 6.9e-74
Identity = 156/215 (72.56%), Postives = 183/215 (85.12%), Query Frame = 0


Query: 2   ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESM 61
           +L+I+DLRFVL+EECP     NA +TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  VTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFVKEHVLDMMVQFNVAETNGAV 121
           +TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V+EHVL+MMV FNVAE NGAV
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAV 148

Query: 122 IDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANV 181
           IDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANV
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANV 208

Query: 182 AHS-KRFQKGSSSGTKSASSFSRTKKIQKKKGGKG 216
           A S ++F +GS+SGTKS  S S  KK +KKKGG+G
Sbjct: 209 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQG 242

[Close]

BLAST of PI0026753.1 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 6.9e-74
Identity = 156/215 (72.56%), Postives = 183/215 (85.12%), Query Frame = 0


Query: 2   ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESM 61
           +L+I+DLRFVL+EECP     NA +TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  VTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFVKEHVLDMMVQFNVAETNGAV 121
           +TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V+EHVL+MMV FNVAE NGAV
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAV 148

Query: 122 IDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANV 181
           IDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANV
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANV 208

Query: 182 AHS-KRFQKGSSSGTKSASSFSRTKKIQKKKGGKG 216
           A S ++F +GS+SGTKS  S S  KK +KKKGG+G
Sbjct: 209 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQG 242

[Close]

BLAST of PI0026753.1 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 6.9e-74
Identity = 156/215 (72.56%), Postives = 183/215 (85.12%), Query Frame = 0


Query: 2   ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESM 61
           +L+I+DLRFVL+EECP     NA +TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  VTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFVKEHVLDMMVQFNVAETNGAV 121
           +TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V+EHVL+MMV FNVAE NGAV
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAV 148

Query: 122 IDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANV 181
           IDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANV
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANV 208

Query: 182 AHS-KRFQKGSSSGTKSASSFSRTKKIQKKKGGKG 216
           A S ++F +GS+SGTKS  S S  KK +KKKGG+G
Sbjct: 209 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQG 242

[Close]

BLAST of PI0026753.1 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 6.9e-74
Identity = 156/215 (72.56%), Postives = 183/215 (85.12%), Query Frame = 0


Query: 2   ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESM 61
           +L+I+DLRFVL+EECP     NA +TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  VTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFVKEHVLDMMVQFNVAETNGAV 121
           +TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V+EHVL+MMV FNVAE NGAV
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAV 148

Query: 122 IDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANV 181
           IDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANV
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANV 208

Query: 182 AHS-KRFQKGSSSGTKSASSFSRTKKIQKKKGGKG 216
           A S ++F +GS+SGTKS  S S  KK +KKKGG+G
Sbjct: 209 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQG 242

[Close]

BLAST of PI0026753.1 vs. ExPASy TrEMBL
Match: A0A5A7V6N0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G00160 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 6.9e-74
Identity = 156/215 (72.56%), Postives = 183/215 (85.12%), Query Frame = 0


Query: 2   ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESM 61
           +L+I+DLRFVL+EECP     NA QTVR+ Y+RW KANEK R YILAS+S+VL+KKHESM
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATQTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  VTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFVKEHVLDMMVQFNVAETNGAV 121
           +TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V+EHVL++MV FNVAE NGAV
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNIMVHFNVAEMNGAV 148

Query: 122 IDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANV 181
           IDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANV
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANV 208

Query: 182 AHS-KRFQKGSSSGTKSASSFSRTKKIQKKKGGKG 216
           A S ++F +GS+SGTKS  S S  KK +KKKGG+G
Sbjct: 209 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQG 242

[Close]

BLAST of PI0026753.1 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 287.0 bits (733), Expect = 1.4e-73
Identity = 156/215 (72.56%), Postives = 183/215 (85.12%), Query Frame = 0


Query: 2   ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESM 61
           +L+I+DLRFVL+EECP     NA +TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  VTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFVKEHVLDMMVQFNVAETNGAV 121
           +TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V+EHVL+MMV FNVAE NGAV
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAV 148

Query: 122 IDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANV 181
           IDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANV
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANV 208

Query: 182 AHS-KRFQKGSSSGTKSASSFSRTKKIQKKKGGKG 216
           A S ++F +GS+SGTKS  S S  KK +KKKGG+G
Sbjct: 209 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQG 242

[Close]

BLAST of PI0026753.1 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 287.0 bits (733), Expect = 1.4e-73
Identity = 156/215 (72.56%), Postives = 183/215 (85.12%), Query Frame = 0


Query: 2   ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESM 61
           +L+I+DLRFVL+EECP     NA +TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM
Sbjct: 28  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 87

Query: 62  VTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFVKEHVLDMMVQFNVAETNGAV 121
           +TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V+EHVL+MMV FNVAE NGAV
Sbjct: 88  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAV 147

Query: 122 IDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANV 181
           IDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANV
Sbjct: 148 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANV 207

Query: 182 AHS-KRFQKGSSSGTKSASSFSRTKKIQKKKGGKG 216
           A S ++F +GS+SGTKS  S S  KK +KKKGG+G
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQG 241

[Close]

BLAST of PI0026753.1 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 287.0 bits (733), Expect = 1.4e-73
Identity = 156/215 (72.56%), Postives = 183/215 (85.12%), Query Frame = 0


Query: 2   ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESM 61
           +L+I+DLRFVL+EECP     NA +TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  VTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFVKEHVLDMMVQFNVAETNGAV 121
           +TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V+EHVL+MMV FNVAE NGAV
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAV 148

Query: 122 IDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANV 181
           IDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANV
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANV 208

Query: 182 AHS-KRFQKGSSSGTKSASSFSRTKKIQKKKGGKG 216
           A S ++F +GS+SGTKS  S S  KK +KKKGG+G
Sbjct: 209 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQG 242

[Close]

BLAST of PI0026753.1 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 287.0 bits (733), Expect = 1.4e-73
Identity = 156/215 (72.56%), Postives = 183/215 (85.12%), Query Frame = 0


Query: 2   ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESM 61
           +L+I+DLRFVL+EECP     NA +TVR+ Y+RW KANEK R YILAS+S+VL+KKHESM
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  VTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFVKEHVLDMMVQFNVAETNGAV 121
           +TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V+EHVL+MMV FNVAE NGAV
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAV 148

Query: 122 IDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANV 181
           IDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANV
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANV 208

Query: 182 AHS-KRFQKGSSSGTKSASSFSRTKKIQKKKGGKG 216
           A S ++F +GS+SGTKS  S S  KK +KKKGG+G
Sbjct: 209 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQG 242

[Close]

BLAST of PI0026753.1 vs. NCBI nr
Match: KAA0061339.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 287.0 bits (733), Expect = 1.4e-73
Identity = 156/215 (72.56%), Postives = 183/215 (85.12%), Query Frame = 0


Query: 2   ILVINDLRFVLMEECPPSFVRNAPQTVRDAYDRWTKANEKVRVYILASMSDVLSKKHESM 61
           +L+I+DLRFVL+EECP     NA QTVR+ Y+RW KANEK R YILAS+S+VL+KKHESM
Sbjct: 29  VLIIDDLRFVLVEECPQVPAANATQTVREPYERWAKANEKARAYILASLSEVLAKKHESM 88

Query: 62  VTARQIMDSLQEMFGQPSIQIRHEAIKYVYNAHMKEDQFVKEHVLDMMVQFNVAETNGAV 121
           +TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA M E   V+EHVL++MV FNVAE NGAV
Sbjct: 89  LTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNIMVHFNVAEMNGAV 148

Query: 122 IDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANV 181
           IDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANV
Sbjct: 149 IDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANV 208

Query: 182 AHS-KRFQKGSSSGTKSASSFSRTKKIQKKKGGKG 216
           A S ++F +GS+SGTKS  S S  KK +KKKGG+G
Sbjct: 209 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQG 242

The following BLAST results are available for this feature:

BLAST of PI0026753.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0026753.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	6.9e-74	72.56	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	6.9e-74	72.56	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7TU93	6.9e-74	72.56	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	6.9e-74	72.56	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]
A0A5A7V6N0	6.9e-74	72.56	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G0016...	[more]

BLAST of PI0026753.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044955.1	1.4e-73	72.56	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	1.4e-73	72.56	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	1.4e-73	72.56	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	1.4e-73	72.56	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061339.1	1.4e-73	72.56	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0026753.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 35..165 e-value: 1.5E-16 score: 60.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..223
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 26..216
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 26..216

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0026753	PI0026753	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0026753.1-exon	PI0026753.1-exon-chr07:15993432..15994080	exon
PI0026753.1-exon	PI0026753.1-exon-chr07:15996784..15996806	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0026753.1-cds	PI0026753.1-cds-chr07:15993432..15994080	CDS
PI0026753.1-cds	PI0026753.1-cds-chr07:15996784..15996806	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0026753.1	PI0026753.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding