PI0026122.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0026122.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr01: 26581201 .. 26581680 (-)
Sequence length	480
RNA-Seq Expression	PI0026122.1
Synteny	PI0026122.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGATACATTATATGTACGATGTTCCTATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCCAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATGTCAGTTTTTGGAGCAGGATTTTATGATTCTGAGGTCGGTACAGGATATAATGACTCAGGGGTCGGTCCATCGTCTTCATACGTGGATGCTGGACCATCAACTTCTTACATGCATGGACATGGACACGGACGCGGCCGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTTCCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGCTAGGGCAAGCAAGAGTTCAGAGTCGACGACGACAACCAACCCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA

mRNA sequence

ATGGAGGAGATACATTATATGTACGATGTTCCTATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCCAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATGTCAGTTTTTGGAGCAGGATTTTATGATTCTGAGGTCGGTACAGGATATAATGACTCAGGGGTCGGTCCATCGTCTTCATACGTGGATGCTGGACCATCAACTTCTTACATGCATGGACATGGACACGGACGCGGCCGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTTCCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGCTAGGGCAAGCAAGAGTTCAGAGTCGACGACGACAACCAACCCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA

Coding sequence (CDS)

ATGGAGGAGATACATTATATGTACGATGTTCCTATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCCAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATGTCAGTTTTTGGAGCAGGATTTTATGATTCTGAGGTCGGTACAGGATATAATGACTCAGGGGTCGGTCCATCGTCTTCATACGTGGATGCTGGACCATCAACTTCTTACATGCATGGACATGGACACGGACGCGGCCGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTTCCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGCTAGGGCAAGCAAGAGTTCAGAGTCGACGACGACAACCAACCCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA

Protein sequence

MEEIHYMYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSVFGAGFYDSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVPDPQEYQQEPENQEELGQARVQSRRRQPTRNRRRPGCGTH

Homology

[Close]

BLAST of PI0026122.1 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.8e-61
Identity = 127/159 (79.87%), Postives = 134/159 (84.28%), Query Frame = 0


Query: 1   MEEIHYMYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSV 60
           MEEIH MYD+PIVPPPV+RG VRVEE ELD+VYHNVEEVP  TQTQSQTGYGSPM MM  
Sbjct: 66  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 125

Query: 61  FGAGFYDSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVP 120
           F AG+ D EVG GY D+GVGPSSSYVD  PSTSYM  HGH RG GEHNEYLY+EAP DV 
Sbjct: 126 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYM--HGHSRGYGEHNEYLYHEAPADVS 185

Query: 121 DPQEYQQEPENQEELGQARVQSRRRQPTRNRRRPGCGTH 160
           D QEYQQEPENQE+  Q RVQSRRRQPTRNRRRPGCGTH
Sbjct: 186 DRQEYQQEPENQEDREQHRVQSRRRQPTRNRRRPGCGTH 222

[Close]

BLAST of PI0026122.1 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.1e-60
Identity = 126/159 (79.25%), Postives = 133/159 (83.65%), Query Frame = 0


Query: 1   MEEIHYMYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSV 60
           MEEIH MYD+PIVPPPV+RG VRVEE ELD+VYHNVEEVP  TQTQSQTGYGSPM MM  
Sbjct: 54  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 113

Query: 61  FGAGFYDSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVP 120
           F AG+ D EVG GY D+GVGPSSSYVD  PSTSYM  HGH RG GEHNEYLY+EAP DV 
Sbjct: 114 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYM--HGHRRGYGEHNEYLYHEAPADVS 173

Query: 121 DPQEYQQEPENQEELGQARVQSRRRQPTRNRRRPGCGTH 160
           D QEYQQEPENQE+  Q RVQSRRRQPTRNRR PGCGTH
Sbjct: 174 DRQEYQQEPENQEDREQHRVQSRRRQPTRNRRCPGCGTH 210

[Close]

BLAST of PI0026122.1 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 5.9e-59
Identity = 122/153 (79.74%), Postives = 130/153 (84.97%), Query Frame = 0


Query: 7   MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSVFGAGFY 66
           MYD+PIVPP V+RGRVRVEE ELDEVYHNVEEVPP TQTQSQTGYGSPMMMM  FGAG+ 
Sbjct: 1   MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60

Query: 67  DSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVPDPQEYQ 126
           DSEV TGY D+G+GP SSY+D GPS SYM  HGHGRG GEHNEYLY+EAP DV D QEYQ
Sbjct: 61  DSEVSTGYYDAGIGPLSSYMDVGPSNSYM--HGHGRGYGEHNEYLYHEAPADVSDRQEYQ 120

Query: 127 QEPENQEELGQARVQSRRRQPTRNRRRPGCGTH 160
           QEPENQE+  Q RVQSRRRQPTRNRR   CGTH
Sbjct: 121 QEPENQEDREQHRVQSRRRQPTRNRRHLSCGTH 151

[Close]

BLAST of PI0026122.1 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 6.5e-58
Identity = 121/159 (76.10%), Postives = 133/159 (83.65%), Query Frame = 0


Query: 1   MEEIHYMYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSV 60
           ME+IH +YD+PIVPPPV+R R RVEE ELDEVYHNVEEVPP TQTQSQTGYGSPM MM  
Sbjct: 344 MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT 403

Query: 61  FGAGFYDSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVP 120
           FGAG+ DSEV  GY D+ VGP SSY+D GPSTSYM  +GHGRG GEHNEYLY+EAPTDV 
Sbjct: 404 FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYM--YGHGRGYGEHNEYLYHEAPTDVS 463

Query: 121 DPQEYQQEPENQEELGQARVQSRRRQPTRNRRRPGCGTH 160
           D QEYQQEP+NQE+  Q RVQSRRRQP RNR+  GCGTH
Sbjct: 464 DRQEYQQEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 500

[Close]

BLAST of PI0026122.1 vs. ExPASy TrEMBL
Match: A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 5.0e-50
Identity = 107/143 (74.83%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 1   MEEIHYMYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSV 60
           MEEIH MY +PIVPP ++RGRV+VEE ELDEVYHNVEE+ P TQ Q+QTGYGSPM+MM  
Sbjct: 63  MEEIHNMYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPT 122

Query: 61  FGAGFYDSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVP 120
           FG G+ D EV T Y DSGVGPSSSY+D GPSTSYMHGH H    GEHNEYLY+EAPT+V 
Sbjct: 123 FGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRH--DYGEHNEYLYHEAPTEVS 182

Query: 121 DPQEYQQEPENQEELGQARVQSR 144
           D QEYQQEPENQEEL Q RVQSR
Sbjct: 183 DRQEYQQEPENQEELEQHRVQSR 203

[Close]

BLAST of PI0026122.1 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 244.6 bits (623), Expect = 5.8e-61
Identity = 127/159 (79.87%), Postives = 134/159 (84.28%), Query Frame = 0


Query: 1   MEEIHYMYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSV 60
           MEEIH MYD+PIVPPPV+RG VRVEE ELD+VYHNVEEVP  TQTQSQTGYGSPM MM  
Sbjct: 66  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 125

Query: 61  FGAGFYDSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVP 120
           F AG+ D EVG GY D+GVGPSSSYVD  PSTSYM  HGH RG GEHNEYLY+EAP DV 
Sbjct: 126 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYM--HGHSRGYGEHNEYLYHEAPADVS 185

Query: 121 DPQEYQQEPENQEELGQARVQSRRRQPTRNRRRPGCGTH 160
           D QEYQQEPENQE+  Q RVQSRRRQPTRNRRRPGCGTH
Sbjct: 186 DRQEYQQEPENQEDREQHRVQSRRRQPTRNRRRPGCGTH 222

[Close]

BLAST of PI0026122.1 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 240.7 bits (613), Expect = 8.4e-60
Identity = 126/159 (79.25%), Postives = 133/159 (83.65%), Query Frame = 0


Query: 1   MEEIHYMYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSV 60
           MEEIH MYD+PIVPPPV+RG VRVEE ELD+VYHNVEEVP  TQTQSQTGYGSPM MM  
Sbjct: 54  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 113

Query: 61  FGAGFYDSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVP 120
           F AG+ D EVG GY D+GVGPSSSYVD  PSTSYM  HGH RG GEHNEYLY+EAP DV 
Sbjct: 114 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYM--HGHRRGYGEHNEYLYHEAPADVS 173

Query: 121 DPQEYQQEPENQEELGQARVQSRRRQPTRNRRRPGCGTH 160
           D QEYQQEPENQE+  Q RVQSRRRQPTRNRR PGCGTH
Sbjct: 174 DRQEYQQEPENQEDREQHRVQSRRRQPTRNRRCPGCGTH 210

[Close]

BLAST of PI0026122.1 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 1.2e-58
Identity = 122/153 (79.74%), Postives = 130/153 (84.97%), Query Frame = 0


Query: 7   MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSVFGAGFY 66
           MYD+PIVPP V+RGRVRVEE ELDEVYHNVEEVPP TQTQSQTGYGSPMMMM  FGAG+ 
Sbjct: 1   MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60

Query: 67  DSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVPDPQEYQ 126
           DSEV TGY D+G+GP SSY+D GPS SYM  HGHGRG GEHNEYLY+EAP DV D QEYQ
Sbjct: 61  DSEVSTGYYDAGIGPLSSYMDVGPSNSYM--HGHGRGYGEHNEYLYHEAPADVSDRQEYQ 120

Query: 127 QEPENQEELGQARVQSRRRQPTRNRRRPGCGTH 160
           QEPENQE+  Q RVQSRRRQPTRNRR   CGTH
Sbjct: 121 QEPENQEDREQHRVQSRRRQPTRNRRHLSCGTH 151

[Close]

BLAST of PI0026122.1 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 233.4 bits (594), Expect = 1.3e-57
Identity = 121/159 (76.10%), Postives = 133/159 (83.65%), Query Frame = 0


Query: 1   MEEIHYMYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSV 60
           ME+IH +YD+PIVPPPV+R R RVEE ELDEVYHNVEEVPP TQTQSQTGYGSPM MM  
Sbjct: 344 MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT 403

Query: 61  FGAGFYDSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVP 120
           FGAG+ DSEV  GY D+ VGP SSY+D GPSTSYM  +GHGRG GEHNEYLY+EAPTDV 
Sbjct: 404 FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYM--YGHGRGYGEHNEYLYHEAPTDVS 463

Query: 121 DPQEYQQEPENQEELGQARVQSRRRQPTRNRRRPGCGTH 160
           D QEYQQEP+NQE+  Q RVQSRRRQP RNR+  GCGTH
Sbjct: 464 DRQEYQQEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 500

[Close]

BLAST of PI0026122.1 vs. NCBI nr
Match: KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 207.2 bits (526), Expect = 1.0e-49
Identity = 107/143 (74.83%), Postives = 118/143 (82.52%), Query Frame = 0


Query: 1   MEEIHYMYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSV 60
           MEEIH MY +PIVPP ++RGRV+VEE ELDEVYHNVEE+ P TQ Q+QTGYGSPM+MM  
Sbjct: 63  MEEIHNMYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPT 122

Query: 61  FGAGFYDSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVP 120
           FG G+ D EV T Y DSGVGPSSSY+D GPSTSYMHGH H    GEHNEYLY+EAPT+V 
Sbjct: 123 FGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRH--DYGEHNEYLYHEAPTEVS 182

Query: 121 DPQEYQQEPENQEELGQARVQSR 144
           D QEYQQEPENQEEL Q RVQSR
Sbjct: 183 DRQEYQQEPENQEELEQHRVQSR 203

The following BLAST results are available for this feature:

BLAST of PI0026122.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0026122.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V342	2.8e-61	79.87	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3BSG8	4.1e-60	79.25	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3CXX3	5.9e-59	79.74	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3DJV7	6.5e-58	76.10	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7SLF8	5.0e-50	74.83	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of PI0026122.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062642.1	5.8e-61	79.87	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK01176.1	8.4e-60	79.25	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0049532.1	1.2e-58	79.74	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK23842.1	1.3e-57	76.10	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0025972.1	1.0e-49	74.83	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of PI0026122.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..159

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0026122	PI0026122	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0026122.1-exon	PI0026122.1-exon-chr01:26581201..26581680	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0026122.1-cds	PI0026122.1-cds-chr01:26581201..26581680	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0026122.1	PI0026122.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance