Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGATACATTATATGTACGATGTTCCTATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCCAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATGTCAGTTTTTGGAGCAGGATTTTATGATTCTGAGGTCGGTACAGGATATAATGACTCAGGGGTCGGTCCATCGTCTTCATACGTGGATGCTGGACCATCAACTTCTTACATGCATGGACATGGACACGGACGCGGCCGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTTCCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGCTAGGGCAAGCAAGAGTTCAGAGTCGACGACGACAACCAACCCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA
mRNA sequence
ATGGAGGAGATACATTATATGTACGATGTTCCTATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCCAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATGTCAGTTTTTGGAGCAGGATTTTATGATTCTGAGGTCGGTACAGGATATAATGACTCAGGGGTCGGTCCATCGTCTTCATACGTGGATGCTGGACCATCAACTTCTTACATGCATGGACATGGACACGGACGCGGCCGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTTCCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGCTAGGGCAAGCAAGAGTTCAGAGTCGACGACGACAACCAACCCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA
Coding sequence (CDS)
ATGGAGGAGATACATTATATGTACGATGTTCCTATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAGTACCTCCAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATGTCAGTTTTTGGAGCAGGATTTTATGATTCTGAGGTCGGTACAGGATATAATGACTCAGGGGTCGGTCCATCGTCTTCATACGTGGATGCTGGACCATCAACTTCTTACATGCATGGACATGGACACGGACGCGGCCGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTTCCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGCTAGGGCAAGCAAGAGTTCAGAGTCGACGACGACAACCAACCCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA
Protein sequence
MEEIHYMYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSVFGAGFYDSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVPDPQEYQQEPENQEELGQARVQSRRRQPTRNRRRPGCGTH
Homology
BLAST of PI0026122 vs. ExPASy TrEMBL
Match:
A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)
HSP 1 Score: 244.6 bits (623), Expect = 2.8e-61
Identity = 127/159 (79.87%), Postives = 134/159 (84.28%), Query Frame = 0
Query: 1 MEEIHYMYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSV 60
MEEIH MYD+PIVPPPV+RG VRVEE ELD+VYHNVEEVP TQTQSQTGYGSPM MM
Sbjct: 66 MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 125
Query: 61 FGAGFYDSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVP 120
F AG+ D EVG GY D+GVGPSSSYVD PSTSYM HGH RG GEHNEYLY+EAP DV
Sbjct: 126 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYM--HGHSRGYGEHNEYLYHEAPADVS 185
Query: 121 DPQEYQQEPENQEELGQARVQSRRRQPTRNRRRPGCGTH 160
D QEYQQEPENQE+ Q RVQSRRRQPTRNRRRPGCGTH
Sbjct: 186 DRQEYQQEPENQEDREQHRVQSRRRQPTRNRRRPGCGTH 222
BLAST of PI0026122 vs. ExPASy TrEMBL
Match:
A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)
HSP 1 Score: 240.7 bits (613), Expect = 4.1e-60
Identity = 126/159 (79.25%), Postives = 133/159 (83.65%), Query Frame = 0
Query: 1 MEEIHYMYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSV 60
MEEIH MYD+PIVPPPV+RG VRVEE ELD+VYHNVEEVP TQTQSQTGYGSPM MM
Sbjct: 54 MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 113
Query: 61 FGAGFYDSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVP 120
F AG+ D EVG GY D+GVGPSSSYVD PSTSYM HGH RG GEHNEYLY+EAP DV
Sbjct: 114 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYM--HGHRRGYGEHNEYLYHEAPADVS 173
Query: 121 DPQEYQQEPENQEELGQARVQSRRRQPTRNRRRPGCGTH 160
D QEYQQEPENQE+ Q RVQSRRRQPTRNRR PGCGTH
Sbjct: 174 DRQEYQQEPENQEDREQHRVQSRRRQPTRNRRCPGCGTH 210
BLAST of PI0026122 vs. ExPASy TrEMBL
Match:
A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)
HSP 1 Score: 236.9 bits (603), Expect = 5.9e-59
Identity = 122/153 (79.74%), Postives = 130/153 (84.97%), Query Frame = 0
Query: 7 MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSVFGAGFY 66
MYD+PIVPP V+RGRVRVEE ELDEVYHNVEEVPP TQTQSQTGYGSPMMMM FGAG+
Sbjct: 1 MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60
Query: 67 DSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVPDPQEYQ 126
DSEV TGY D+G+GP SSY+D GPS SYM HGHGRG GEHNEYLY+EAP DV D QEYQ
Sbjct: 61 DSEVSTGYYDAGIGPLSSYMDVGPSNSYM--HGHGRGYGEHNEYLYHEAPADVSDRQEYQ 120
Query: 127 QEPENQEELGQARVQSRRRQPTRNRRRPGCGTH 160
QEPENQE+ Q RVQSRRRQPTRNRR CGTH
Sbjct: 121 QEPENQEDREQHRVQSRRRQPTRNRRHLSCGTH 151
BLAST of PI0026122 vs. ExPASy TrEMBL
Match:
A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)
HSP 1 Score: 233.4 bits (594), Expect = 6.5e-58
Identity = 121/159 (76.10%), Postives = 133/159 (83.65%), Query Frame = 0
Query: 1 MEEIHYMYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSV 60
ME+IH +YD+PIVPPPV+R R RVEE ELDEVYHNVEEVPP TQTQSQTGYGSPM MM
Sbjct: 344 MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT 403
Query: 61 FGAGFYDSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVP 120
FGAG+ DSEV GY D+ VGP SSY+D GPSTSYM +GHGRG GEHNEYLY+EAPTDV
Sbjct: 404 FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYM--YGHGRGYGEHNEYLYHEAPTDVS 463
Query: 121 DPQEYQQEPENQEELGQARVQSRRRQPTRNRRRPGCGTH 160
D QEYQQEP+NQE+ Q RVQSRRRQP RNR+ GCGTH
Sbjct: 464 DRQEYQQEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 500
BLAST of PI0026122 vs. ExPASy TrEMBL
Match:
A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)
HSP 1 Score: 207.2 bits (526), Expect = 5.0e-50
Identity = 107/143 (74.83%), Postives = 118/143 (82.52%), Query Frame = 0
Query: 1 MEEIHYMYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSV 60
MEEIH MY +PIVPP ++RGRV+VEE ELDEVYHNVEE+ P TQ Q+QTGYGSPM+MM
Sbjct: 63 MEEIHNMYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPT 122
Query: 61 FGAGFYDSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVP 120
FG G+ D EV T Y DSGVGPSSSY+D GPSTSYMHGH H GEHNEYLY+EAPT+V
Sbjct: 123 FGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRH--DYGEHNEYLYHEAPTEVS 182
Query: 121 DPQEYQQEPENQEELGQARVQSR 144
D QEYQQEPENQEEL Q RVQSR
Sbjct: 183 DRQEYQQEPENQEELEQHRVQSR 203
BLAST of PI0026122 vs. NCBI nr
Match:
KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 244.6 bits (623), Expect = 5.8e-61
Identity = 127/159 (79.87%), Postives = 134/159 (84.28%), Query Frame = 0
Query: 1 MEEIHYMYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSV 60
MEEIH MYD+PIVPPPV+RG VRVEE ELD+VYHNVEEVP TQTQSQTGYGSPM MM
Sbjct: 66 MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 125
Query: 61 FGAGFYDSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVP 120
F AG+ D EVG GY D+GVGPSSSYVD PSTSYM HGH RG GEHNEYLY+EAP DV
Sbjct: 126 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYM--HGHSRGYGEHNEYLYHEAPADVS 185
Query: 121 DPQEYQQEPENQEELGQARVQSRRRQPTRNRRRPGCGTH 160
D QEYQQEPENQE+ Q RVQSRRRQPTRNRRRPGCGTH
Sbjct: 186 DRQEYQQEPENQEDREQHRVQSRRRQPTRNRRRPGCGTH 222
BLAST of PI0026122 vs. NCBI nr
Match:
TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 240.7 bits (613), Expect = 8.4e-60
Identity = 126/159 (79.25%), Postives = 133/159 (83.65%), Query Frame = 0
Query: 1 MEEIHYMYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSV 60
MEEIH MYD+PIVPPPV+RG VRVEE ELD+VYHNVEEVP TQTQSQTGYGSPM MM
Sbjct: 54 MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 113
Query: 61 FGAGFYDSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVP 120
F AG+ D EVG GY D+GVGPSSSYVD PSTSYM HGH RG GEHNEYLY+EAP DV
Sbjct: 114 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYM--HGHRRGYGEHNEYLYHEAPADVS 173
Query: 121 DPQEYQQEPENQEELGQARVQSRRRQPTRNRRRPGCGTH 160
D QEYQQEPENQE+ Q RVQSRRRQPTRNRR PGCGTH
Sbjct: 174 DRQEYQQEPENQEDREQHRVQSRRRQPTRNRRCPGCGTH 210
BLAST of PI0026122 vs. NCBI nr
Match:
KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 236.9 bits (603), Expect = 1.2e-58
Identity = 122/153 (79.74%), Postives = 130/153 (84.97%), Query Frame = 0
Query: 7 MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSVFGAGFY 66
MYD+PIVPP V+RGRVRVEE ELDEVYHNVEEVPP TQTQSQTGYGSPMMMM FGAG+
Sbjct: 1 MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60
Query: 67 DSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVPDPQEYQ 126
DSEV TGY D+G+GP SSY+D GPS SYM HGHGRG GEHNEYLY+EAP DV D QEYQ
Sbjct: 61 DSEVSTGYYDAGIGPLSSYMDVGPSNSYM--HGHGRGYGEHNEYLYHEAPADVSDRQEYQ 120
Query: 127 QEPENQEELGQARVQSRRRQPTRNRRRPGCGTH 160
QEPENQE+ Q RVQSRRRQPTRNRR CGTH
Sbjct: 121 QEPENQEDREQHRVQSRRRQPTRNRRHLSCGTH 151
BLAST of PI0026122 vs. NCBI nr
Match:
TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 233.4 bits (594), Expect = 1.3e-57
Identity = 121/159 (76.10%), Postives = 133/159 (83.65%), Query Frame = 0
Query: 1 MEEIHYMYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSV 60
ME+IH +YD+PIVPPPV+R R RVEE ELDEVYHNVEEVPP TQTQSQTGYGSPM MM
Sbjct: 344 MEKIHNIYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPT 403
Query: 61 FGAGFYDSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVP 120
FGAG+ DSEV GY D+ VGP SSY+D GPSTSYM +GHGRG GEHNEYLY+EAPTDV
Sbjct: 404 FGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYM--YGHGRGYGEHNEYLYHEAPTDVS 463
Query: 121 DPQEYQQEPENQEELGQARVQSRRRQPTRNRRRPGCGTH 160
D QEYQQEP+NQE+ Q RVQSRRRQP RNR+ GCGTH
Sbjct: 464 DRQEYQQEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 500
BLAST of PI0026122 vs. NCBI nr
Match:
KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 207.2 bits (526), Expect = 1.0e-49
Identity = 107/143 (74.83%), Postives = 118/143 (82.52%), Query Frame = 0
Query: 1 MEEIHYMYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEVPPVTQTQSQTGYGSPMMMMSV 60
MEEIH MY +PIVPP ++RGRV+VEE ELDEVYHNVEE+ P TQ Q+QTGYGSPM+MM
Sbjct: 63 MEEIHNMYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPT 122
Query: 61 FGAGFYDSEVGTGYNDSGVGPSSSYVDAGPSTSYMHGHGHGRGRGEHNEYLYYEAPTDVP 120
FG G+ D EV T Y DSGVGPSSSY+D GPSTSYMHGH H GEHNEYLY+EAPT+V
Sbjct: 123 FGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRH--DYGEHNEYLYHEAPTEVS 182
Query: 121 DPQEYQQEPENQEELGQARVQSR 144
D QEYQQEPENQEEL Q RVQSR
Sbjct: 183 DRQEYQQEPENQEELEQHRVQSR 203
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7V342 | 2.8e-61 | 79.87 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3BSG8 | 4.1e-60 | 79.25 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5D3CXX3 | 5.9e-59 | 79.74 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5D3DJV7 | 6.5e-58 | 76.10 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7SLF8 | 5.0e-50 | 74.83 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0062642.1 | 5.8e-61 | 79.87 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| TYK01176.1 | 8.4e-60 | 79.25 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| KAA0049532.1 | 1.2e-58 | 79.74 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| TYK23842.1 | 1.3e-57 | 76.10 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| KAA0025972.1 | 1.0e-49 | 74.83 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
