PI0024901.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0024901.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr06: 13834491 .. 13835258 (+)
Sequence length	768
RNA-Seq Expression	PI0024901.1
Synteny	PI0024901.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTTACCCTACTTCGCAATGACCAGCCCACGGCCGCCACTGAGGTTGTTGAGGTTTCCGACCCCACCATCCACCCGATAGACCCTCCCCCGCGAGCCTCTCCCATTCTTATTATTTTTGAAGTGGACGCCCCACCACCCATCCCATCGCCACCACCACCTGCTTTGGATACCGCGCAAAACGTTAATGATCTACACATTAAGGACAAAAACCATATCCTTAATGAAGTTGGCGAAACAACTTCTTCGGCACATACCACCACCGCCCAACCCTCCACCGCGCCCGGAGATGACGAAGATTTGGGCGAACTATTAGGCTCCATTGTGTGTAAGCCAATGATTGATCATTTTGAACAAGTATTGGCTCACCAAGCGGACCAGGTGACGCAACTCCAAGATTTGAAGAATAAAATCAATCAGTTGCAACGCCCCAACGCCGAGAACCTTGTGACGCCCGCTTCTCAAGAAGACATAAATATCTTGCGAAGCGAACTGAAGGAACTTTCGGCGAACAACGCTCAGCTCTCCGCCGCAATATCCAATCTCTCCACTTCCGTCTCCAGCCTCACATCCCTGGTCATTGCCCAATCTGAGATGATGCGGCAAATAGCTGCGCGGCATGACAAGCAGTTTCGCACGCAAATGGAATACACGTACGCAGCAGTTGTTCAACGCGTGCCTGCTCCAATCATACCGCCAGATCTTAAAGTACCCTTTCCACCACTCACGCGTCTTGGCGATCCTGCTCCCCGCCAAGACAACTAA

mRNA sequence

ATGGATCTTACCCTACTTCGCAATGACCAGCCCACGGCCGCCACTGAGGTTGTTGAGGTTTCCGACCCCACCATCCACCCGATAGACCCTCCCCCGCGAGCCTCTCCCATTCTTATTATTTTTGAAGTGGACGCCCCACCACCCATCCCATCGCCACCACCACCTGCTTTGGATACCGCGCAAAACGTTAATGATCTACACATTAAGGACAAAAACCATATCCTTAATGAAGTTGGCGAAACAACTTCTTCGGCACATACCACCACCGCCCAACCCTCCACCGCGCCCGGAGATGACGAAGATTTGGGCGAACTATTAGGCTCCATTGTGTGTAAGCCAATGATTGATCATTTTGAACAAGTATTGGCTCACCAAGCGGACCAGGTGACGCAACTCCAAGATTTGAAGAATAAAATCAATCAGTTGCAACGCCCCAACGCCGAGAACCTTGTGACGCCCGCTTCTCAAGAAGACATAAATATCTTGCGAAGCGAACTGAAGGAACTTTCGGCGAACAACGCTCAGCTCTCCGCCGCAATATCCAATCTCTCCACTTCCGTCTCCAGCCTCACATCCCTGGTCATTGCCCAATCTGAGATGATGCGGCAAATAGCTGCGCGGCATGACAAGCAGTTTCGCACGCAAATGGAATACACGTACGCAGCAGTTGTTCAACGCGTGCCTGCTCCAATCATACCGCCAGATCTTAAAGTACCCTTTCCACCACTCACGCGTCTTGGCGATCCTGCTCCCCGCCAAGACAACTAA

Coding sequence (CDS)

ATGGATCTTACCCTACTTCGCAATGACCAGCCCACGGCCGCCACTGAGGTTGTTGAGGTTTCCGACCCCACCATCCACCCGATAGACCCTCCCCCGCGAGCCTCTCCCATTCTTATTATTTTTGAAGTGGACGCCCCACCACCCATCCCATCGCCACCACCACCTGCTTTGGATACCGCGCAAAACGTTAATGATCTACACATTAAGGACAAAAACCATATCCTTAATGAAGTTGGCGAAACAACTTCTTCGGCACATACCACCACCGCCCAACCCTCCACCGCGCCCGGAGATGACGAAGATTTGGGCGAACTATTAGGCTCCATTGTGTGTAAGCCAATGATTGATCATTTTGAACAAGTATTGGCTCACCAAGCGGACCAGGTGACGCAACTCCAAGATTTGAAGAATAAAATCAATCAGTTGCAACGCCCCAACGCCGAGAACCTTGTGACGCCCGCTTCTCAAGAAGACATAAATATCTTGCGAAGCGAACTGAAGGAACTTTCGGCGAACAACGCTCAGCTCTCCGCCGCAATATCCAATCTCTCCACTTCCGTCTCCAGCCTCACATCCCTGGTCATTGCCCAATCTGAGATGATGCGGCAAATAGCTGCGCGGCATGACAAGCAGTTTCGCACGCAAATGGAATACACGTACGCAGCAGTTGTTCAACGCGTGCCTGCTCCAATCATACCGCCAGATCTTAAAGTACCCTTTCCACCACTCACGCGTCTTGGCGATCCTGCTCCCCGCCAAGACAACTAA

Protein sequence

MDLTLLRNDQPTAATEVVEVSDPTIHPIDPPPRASPILIIFEVDAPPPIPSPPPPALDTAQNVNDLHIKDKNHILNEVGETTSSAHTTTAQPSTAPGDDEDLGELLGSIVCKPMIDHFEQVLAHQADQVTQLQDLKNKINQLQRPNAENLVTPASQEDINILRSELKELSANNAQLSAAISNLSTSVSSLTSLVIAQSEMMRQIAARHDKQFRTQMEYTYAAVVQRVPAPIIPPDLKVPFPPLTRLGDPAPRQDN

Homology

[Close]

BLAST of PI0024901.1 vs. ExPASy TrEMBL
Match: A0A5A7VF20 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00430 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-09
Identity = 59/186 (31.72%), Postives = 95/186 (51.08%), Query Frame = 0


Query: 77  EVGETTSS-AHTTTAQPSTAPGDDEDLGELLGSIVCKPMIDHFEQVLAHQADQVTQLQDL 136
           +  ET+SS +     + S    + +D+ + +GS V K   D+FEQVL  Q          
Sbjct: 243 KASETSSSPSKERDLKESFRESEGKDIYDFIGSTVAKRTFDYFEQVLYEQT--------- 302

Query: 137 KNKINQLQRPNAENLVTPASQEDINILRSELKELSANN----AQLSAAISNLSTSVSSLT 196
              IN ++      L+     E + +  S+LK+L        A++ A    LS++VS+LT
Sbjct: 303 ---INSMKHDAMTTLM-----EKVQVENSKLKQLLTEQQKQVAKIMANQDQLSSTVSNLT 362

Query: 197 SLVIAQSEMMRQIAARHDKQFRTQMEYTYAAVVQRVPAPIIPPDLKVPFPPL--TRLGDP 256
            +VI   EM  ++  + DKQF+  +EYT+A   QR+P+P I P+++  +P +    LG P
Sbjct: 363 CVVIMNFEMTWKMGVQRDKQFKASIEYTHAVFAQRMPSPFISPEIESLYPLIQPVNLGYP 411

[Close]

BLAST of PI0024901.1 vs. ExPASy TrEMBL
Match: A0A5D3DYE2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2030G00280 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-09
Identity = 59/183 (32.24%), Postives = 94/183 (51.37%), Query Frame = 0


Query: 80  ETTSS-AHTTTAQPSTAPGDDEDLGELLGSIVCKPMIDHFEQVLAHQADQVTQLQDLKNK 139
           ET+SS +     + S    + +D+ + +GS V K   D+FEQVL  Q             
Sbjct: 166 ETSSSPSKERDLKESFRESEGKDIYDFIGSTVAKRTFDYFEQVLYEQT------------ 225

Query: 140 INQLQRPNAENLVTPASQEDINILRSELKELSANN----AQLSAAISNLSTSVSSLTSLV 199
           IN ++      L+     E + +  S+LK+L        A++ A    LS++VS+LT +V
Sbjct: 226 INSMKHDAMTTLM-----EKVQVENSKLKQLLTEQQKQVAKIMANQDQLSSTVSNLTCVV 285

Query: 200 IAQSEMMRQIAARHDKQFRTQMEYTYAAVVQRVPAPIIPPDLKVPFPPL--TRLGDPAPR 256
           I   EM  ++  + DKQF+  +EYT+A   QR+P+P I P+++  +P +    LG P P 
Sbjct: 286 IMNFEMTWKMGVQRDKQFKASIEYTHAVFAQRMPSPFISPEIESLYPLIQPVNLGYPDPH 331

[Close]

BLAST of PI0024901.1 vs. ExPASy TrEMBL
Match: A0A5D3CT45 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G001110 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-05
Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 199 EMMRQIAARHDKQFRTQMEYTYAAVVQRVPAPIIPPDLKVPFPPLTRL-GDPAPRQDN 256
           EM  ++  R D++F+  MEYT+A  VQRVP P+IP +L+ PFPP+ +  G P PRQ++
Sbjct: 144 EMQVKMGERRDRKFQASMEYTHAIFVQRVPQPVIPQELETPFPPIHQAPGTPKPRQED 201

[Close]

BLAST of PI0024901.1 vs. NCBI nr
Match: KAA0064129.1 (uncharacterized protein E6C27_scaffold548G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 3.7e-09
Identity = 59/186 (31.72%), Postives = 95/186 (51.08%), Query Frame = 0


Query: 77  EVGETTSS-AHTTTAQPSTAPGDDEDLGELLGSIVCKPMIDHFEQVLAHQADQVTQLQDL 136
           +  ET+SS +     + S    + +D+ + +GS V K   D+FEQVL  Q          
Sbjct: 243 KASETSSSPSKERDLKESFRESEGKDIYDFIGSTVAKRTFDYFEQVLYEQT--------- 302

Query: 137 KNKINQLQRPNAENLVTPASQEDINILRSELKELSANN----AQLSAAISNLSTSVSSLT 196
              IN ++      L+     E + +  S+LK+L        A++ A    LS++VS+LT
Sbjct: 303 ---INSMKHDAMTTLM-----EKVQVENSKLKQLLTEQQKQVAKIMANQDQLSSTVSNLT 362

Query: 197 SLVIAQSEMMRQIAARHDKQFRTQMEYTYAAVVQRVPAPIIPPDLKVPFPPL--TRLGDP 256
            +VI   EM  ++  + DKQF+  +EYT+A   QR+P+P I P+++  +P +    LG P
Sbjct: 363 CVVIMNFEMTWKMGVQRDKQFKASIEYTHAVFAQRMPSPFISPEIESLYPLIQPVNLGYP 411

[Close]

BLAST of PI0024901.1 vs. NCBI nr
Match: TYK28611.1 (hypothetical protein E5676_scaffold2030G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 4.9e-09
Identity = 59/183 (32.24%), Postives = 94/183 (51.37%), Query Frame = 0


Query: 80  ETTSS-AHTTTAQPSTAPGDDEDLGELLGSIVCKPMIDHFEQVLAHQADQVTQLQDLKNK 139
           ET+SS +     + S    + +D+ + +GS V K   D+FEQVL  Q             
Sbjct: 166 ETSSSPSKERDLKESFRESEGKDIYDFIGSTVAKRTFDYFEQVLYEQT------------ 225

Query: 140 INQLQRPNAENLVTPASQEDINILRSELKELSANN----AQLSAAISNLSTSVSSLTSLV 199
           IN ++      L+     E + +  S+LK+L        A++ A    LS++VS+LT +V
Sbjct: 226 INSMKHDAMTTLM-----EKVQVENSKLKQLLTEQQKQVAKIMANQDQLSSTVSNLTCVV 285

Query: 200 IAQSEMMRQIAARHDKQFRTQMEYTYAAVVQRVPAPIIPPDLKVPFPPL--TRLGDPAPR 256
           I   EM  ++  + DKQF+  +EYT+A   QR+P+P I P+++  +P +    LG P P 
Sbjct: 286 IMNFEMTWKMGVQRDKQFKASIEYTHAVFAQRMPSPFISPEIESLYPLIQPVNLGYPDPH 331

[Close]

BLAST of PI0024901.1 vs. NCBI nr
Match: TYK14602.1 (hypothetical protein E5676_scaffold552G001110 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 7.3e-05
Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 199 EMMRQIAARHDKQFRTQMEYTYAAVVQRVPAPIIPPDLKVPFPPLTRL-GDPAPRQDN 256
           EM  ++  R D++F+  MEYT+A  VQRVP P+IP +L+ PFPP+ +  G P PRQ++
Sbjct: 144 EMQVKMGERRDRKFQASMEYTHAIFVQRVPQPVIPQELETPFPPIHQAPGTPKPRQED 201

The following BLAST results are available for this feature:

BLAST of PI0024901.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024901.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VF20	1.8e-09	31.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DYE2	2.4e-09	32.24	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CT45	3.5e-05	48.28	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0024901.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064129.1	3.7e-09	31.72	uncharacterized protein E6C27_scaffold548G00430 [Cucumis melo var. makuwa]	[more]
TYK28611.1	4.9e-09	32.24	hypothetical protein E5676_scaffold2030G00280 [Cucumis melo var. makuwa]	[more]
TYK14602.1	7.3e-05	48.28	hypothetical protein E5676_scaffold552G001110 [Cucumis melo var. makuwa]	[more]

BLAST of PI0024901.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 159..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..101

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0024901	PI0024901	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0024901.1-exon	PI0024901.1-exon-chr06:13834491..13835258	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0024901.1-cds	PI0024901.1-cds-chr06:13834491..13835258	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0024901.1	PI0024901.1-protein	polypeptide