PI0020049.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0020049.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr11: 14307007 .. 14312733 (+)
Sequence length	681
RNA-Seq Expression	PI0020049.1
Synteny	PI0020049.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGACATAAAGGTTTTGAAGAAGGGTATTCGGGCCATACGGTGTTTTTCCGATCGAGGCGAAAGACAAAAAGGTCTAAAGTTTGAGTTCTTAGGCATATCCCGGTGTAATTCAACCGAGACTGGAGTGAATTCTCATGCCATCTCGGGGTAACTTTGGCCAAGGCTAGAGGTAGAGAAAAGTAGTTTTGGGGTTCTTAGGCAGAACTCTAGCCTTTTCCGATCGAAAGTAAGAAGATCTCGGAGTGATCTTGGGCCAAATTTGGTCGAGATCATTAAAATTTATTAAAAAGTAGTGCTCGGTTGAGTGGAAGTCAGGTGTTCATAGAATGCAGACTCTTTTATTTTGGCAAGCAGGAGGTGGCAAGGGCTAGCATTTAGAGAGCCTTATAATTAGGTAAACTTCATATGAGTGGTATTTCCTTTTCACTCAGACAAATTACTTCAAATCAGTTGAAAAAGCTTCATATTAAAGTCTATTTTTCAAAGTTGTGTTTCCAAAAGAAGAAGAATTGAATAAGGTTGAGTTTGATCTTGAAGAAGAAGGAAATGTCAGAATTTGGAGGTTTTTTTAGCAATGTGGAGTGTTTGAAGGCCACAGATCGCATTTCTTCGAATTTGATGCTAAAATTTCGAGGTAAAAAAGTTAAGACAATTGTAAGCAAGTTTGAAGAAAGAAATTTGTCACTTTGATGGTTGGTTTAAACGTTATAAGTATTTGAAGTTGAAGGTAGTTCCTGGAAACTTTGCAGTTTTTTGGTAGTTTTGGTGTTTTGTTTAGTTGAGTTTTGATATTTTTTTTATTTTAGAGGATCAAATTGGATTTAAATTCTCTAATTTCAGGGCAAGGAAAAATTAGGCAAGACATTGGCCGAGAAATTAGCATTCATCTGTGAGAAACAAAAATGATTTTAAAGAGATTTCTAAACGTTTTTTATTAAGTATTATCTAAGTATGCTTTGAACTTTTGATATTTGAGAAATGTGAATGATTTATTGAATTAAATTTCACAGCATGAGTTTGAACTAGAAATACTTGAGCATGAGTTTGACTACTGGGTTTCTGAAATACTTATGACAAGTATGTTTGAGAGCAAAGCTTGTTTAATCAAGTTATGATTTATACAAGAGATGTTTATAATATGTTGTCTAAGTTTGAAATTGTGATTTTACAGCATGAGATTTACACATGTTTTAGTCTATACCTGAGTTGTTATGAGATATATAGCAACCCTTCGGGGGAGATAGTTCCTGTGCATAGAGGTCCTTTGATGAGGGTATTTAGTAGATACCTAGAGTTTCCATCATTAAGACTAGGTTTGAGATGGGGGCCTCTACGGACGCCTAGATTTTCATCTCCTAGTAGCTAAAATGAGATAGGACACTACTGATGCCTAGATTTTCGTCTCGTTAAGTATCGCATTATGAGATAGGGTATTTATGCCTAGAGTTTTGTTTGATATGCTTTGGTTCTGTTTCAAAAATGTTTGATAAACTGCTTACTACTTATAATTTATTAAGTACGTTTATAAAACCAGTCACTCATTGAGCTTTGACTCATGCTTTCCAAAATGTTTTCTTACTTTCCATGTAGAGATCGTGGACCCAGCACTTGACTTCGATTGCTTATCTGTTAGTAGTGTTTCAGAGTACATAGTTAGTATGTGTCATTTTGAGTTTCTTTTGGCTTATATTTATAACAGGTTCATTAGTAGTAGTAGCATTTGTGGGTTGTAGAAATTTGTTGTTAAAAACTCTGATCTTAGTTTGTTATGTATTTGTTTATATCAAACTTGTCGTGTTACATCTAATGTAAGTCAGGGTTGCACTATATGTTTTGATATAAGTCTTGTTGTCATGTTCCACTTTGTTGTGTGCTAGTTCAGTTAAGTTTACTAGTGGTCAACAGGTAATGTTGAAAGGAGAACGGTATCTATTGGTTTCATGCCATCTCTCGGACTGAGAGTAGGTGGTCTAAGAGGGGGTGTGACAAGATTTTCCTTTAAATCAAGGAATAATGAGCGTTCGAGATCTAGTAGTCTAAATAGAAACCCTATCTCAACTGAGGAAGCTAACTTAGAAGAAGAAAAAGAACGAGAACCATCAAAGACTTTGAGGATGACTTCTAGACCTATAACATAGAAGAATACCCTAAAGACCTGAAAGAAGCTCTGTCCTCTATAGATGCCAACTTATGGCAATGATGATAAGATGGACTCTCTTAAGTTGAACAATAATTAACATCTAGTAAACCTACCTCCGGGTTGTAAAGCTATAGGTTGTAAGTGAAATCTAAAGAAGAAACTCAAACCTGATGGAACAATAAACAAGTTTAAAACCAGGTTAGTAGCGAAAGAGTTCAGACAATGAGAAAACATAGACTTATTTGACACCTTCTCCCCAGTCACTAGGGTAACCTCAATTCGTGTACTATTTTCTCTTGCTATCCTCAACAACCTTCTAATACCTCAGATGGATGTTAAGACTACTTTCCTCAATAGGGAACTTGAAAAAGAGAAAACAAAGTCTATAAGTTAGATAAATCTCTTTCTGGTCTAAAACAAGCTCCTAAGCCACATGAAAAAATTTGATAGCCTATTTCTATGCAGAGGCTTCAAAGTCAATGAAAGTGACAAGTGCATCTACCATAAGTTTGAAAACAATCGATAAACAATCTTGTGTTTATATGTAGATGATTTGTTAATTCTTGGGTTGAATTTGCACGTCATAAATGATGTAAAGCCTATGTTGAGTGAAAACTTCGACATGAAAGACTTAAGAGAAGCTAGTGTAATCTTAGGGATAAAAGTAACAAGGTCTGAAAAGGGAATTTCTTTGGATCAATCTCATTACGTAGAAAAGATTTTAAAGAAATATAATTACTTCAAATGTAAACCAACGTGTACTCCTTATGACCCTATGTAAGCGATGCGGAATTAGTGGTAGAATATTGGAGAAGGGGGTTGTCGTACCCAAGGGAGCAAACCGCGACTTCAAGAGGATTTTAGAAGGTTCAAATAACAAAGGAAAGCTTCAAGACACAAACAAAGATAATAGTAATAAAGGGGGGGGGGGGGTTGTTGATGTGAGAGAATGAAAATTGCGAGAAGAGAGTAAAGTAAAGATGTGAATTAATATGGTCTATAGAATTATATCAAATCCTTGTAAACAGTTATTATGCGATAAGGACATTTGAGGACTAGCTATTCACTTTTCCTATCATGGAAGCAAGAGGAAGAGAAATTAAAGTGAATCTTCTTTAGAGAAATAACAAGAATGAACTTAGGCGAGAAGAGAACAATTAATTGGGATAAGGATTGTCTCAGCGATCAAGACTTATCCTAATTAACATGAAAGAATTAGGCGAGAAGAAAGGGATCAATCGGAATAAGAATTGTCTCAGCGATCAAGACTTGTCCTAGTTGAAACAAAAGATATTCATTCAAGATTTGTTAAAAAGGTCAGCCATTGTTTAACAAAATTAAGGTCCACTTCATTATCAATATGCAAGATGGGCTAGTAAGAATTATAGACAATTTTACTTACTCATCTAGCGTATTAAGCAATCACAATTCAATTATAAGCTTAGCGCTTTGGCGATTAGAATATGAATTTGGATGAAAATTCTAGGCTCTAGAAACCTATTTTAACATTCAAACTCAAAATAAAATTGTGAAAGGAAGTGCACAATCAAAGAAATTAAAGAAGGAGAGAAGAGTACCTCTTACTTCTCAAGGAAAGTGGGACTAGTCCTTATTGAAAGAATTACTCCATAGAGACTTGGTGGAAAATTGGTGAGAATTTAGTCATTTTTCAGCAAATTGACTAAAAACTTAATAAGGAAATTTCTATAGAGAATTGAAAAGAGTAAGGGTAAGGAATTTGATATGCAAAAAAGTGTAGAGAAATCAAAATTCTATAGTAATTTTGGAATATGAATGAGTGTCTTGAATTGAATTAGAATGGGGTATTTATAGGATTCAAAAGGGAATTTATTTCAAGAAATAACTGCTATATGACAGTTATTTAGTTACAGTGGGCTTGGGCTTGGGATTGGCGGTTATGGCAGATTGCAAGGCGTTTTGGAGTTGCTTGCAGAGGAGGCGATGAGTGTCTGCGGTGAGGCACGCGAGCTTGGGAAGCAGATGTTGGATGAGGTGGGCGGTGAAGTGTGCAGTGTTTTGGACGGCCTGCCTTGCGGTAAGAGGTAGAACGCGTTTGAGTTTTGTGCTCTGAACATCTTTGTCGCGAGAAGTAATTTGAATTCCTTCTTGGAAAATTACTAATTTGCCCTTGATTTTGTTTTTGGCCAATCTTGTTCGCTAGAACTCTATTTTAGCTCATTTTGTGTCATTGGGCTTGTATTGGGGTCTACTATCATATCCTATATAAAAATGTAATATTGATGAGTATTTGATCTTTATTATGGAAAATTAGGATAGATATTTTTAGTCAAAAATAGTTCTATCACCCTAGTGGAAAGTTTTTCAAGAACACTAGTGATAATGTTAACCAATCCGAGTATGTGAGCGCCATTGGCAGTCTCAGATATGCTGCTAATTGAATTAGGCCTGATATAGCTTCTAATGTATGATTACTCTCTAGGTTTACAAGTAGACCTAGTATAGAGCATTGGAATGTTGTAGAAAAGGTTATGAGATACGTAAAGAAAACTTATAACTTAAAATTACACTATCAAATGTTTCCTATTGTTCTCGAAGGCTACAATCGATGCTCATTGGAACTCTCTCTTAGATAACTCAAAGGCTACCAGTGGCTCTTCAATATAGCAAGAGGAGTTGTTTTTCCTGAAAGTCCAAGAAATAGATTATTTTGACCCAGTCAATGATGGAGTCAGAGATGATAGCACTAGCAACTACTAGTGAAGAAGCAAACTACCTTAGAAGTTTGCTATAAGAGATTTCCTTACGGGAAAAACCGGTACCAGCCATCTTGATCCATTGTGATAGTACTACAACAATCGCAAAAGTTCATAACCATTATTATAACAAAAAGATAGGACAAATTCGTCGTAAGCAAAGCACCATTAGAGAGTTCCTCATTGTTATCCAATAAGAGGTTAAGAAATCTGTTAGAAGTTAATTACTCAATTACATTCTGTTTAAGAGAAACTATAACCAATGAGTTATTATAAATACCCTTTATCTGTATATCCATTAATTATTCAATAAAAAAAATAACTCTTTCACAATTAGTAAAAGATTTCATGGAATCAGAGGTTTTCTTGACTTGTGTCTTCAAACCCATCGATCCTTCAAACTCTTTCTTTAAGATCCATGGCTTTCACATCCGATACTCAACTAAGAGACATTCAATCTCCTATATTTCTTCTCACCAATATTTGCAACCTCATCTCTATATGGCTCGATTCGTCCAACTATGTCCTTTGGAAATTTCAATTCTCCTCCATGTTGAAAGTGCACAAACTCTTCAGTTTTGTTGATGGGACGAATACATCTTCGGCCGCGAAGATTGCAGTTCAGGTTACTACTACCAGTGAATCTTCATCATCAACCTTCACTACTTCTATGGTTGTGAATCCATTGTATGATGATTAGATTGCTAAGGATCAAGCCCTTATGACGTTAATCAATACAATGTTATCTCCCAAAGCCGTGGCATATATCATTGGATGCACTTCATCCTATGGGTATGGACTACACTCGAGAAATATTACTCCTCCAATTCTTGGTCAAATATCGTAA

mRNA sequence

ATGAAGGACATAAAGGTTTTGAAGAAGGGTATTCGGGCCATACGGTGTTTTTCCGATCGAGGCGAAAGACAAAAAGGTCTAAAGTTTGAGTTCTTAGGCATATCCCGGTGTAATTCAACCGAGACTGGAGTGAATTCTCATGCCATCTCGGGTGGGCTTGGGCTTGGGATTGGCGGTTATGGCAGATTGCAAGGCGTTTTGGAGTTGCTTGCAGAGGAGGCGATGAGTGTCTGCGGTGAGGCACGCGAGCTTGGGAAGCAGATGTTGGATGAGGTGGGCGGTGAAGTGTGCAGTGTTTTGGACGGCCTGCCTTGCGGTAAGAGATCCATGGCTTTCACATCCGATACTCAACTAAGAGACATTCAATCTCCTATATTTCTTCTCACCAATATTTGCAACCTCATCTCTATATGGCTCGATTCGTCCAACTATGTCCTTTGGAAATTTCAATTCTCCTCCATGTTGAAAGTGCACAAACTCTTCAGTTTTGTTGATGGGACGAATACATCTTCGGCCGCGAAGATTGCAGTTCAGATTGCTAAGGATCAAGCCCTTATGACGTTAATCAATACAATGTTATCTCCCAAAGCCGTGGCATATATCATTGGATGCACTTCATCCTATGGGTATGGACTACACTCGAGAAATATTACTCCTCCAATTCTTGGTCAAATATCGTAA

Coding sequence (CDS)

ATGAAGGACATAAAGGTTTTGAAGAAGGGTATTCGGGCCATACGGTGTTTTTCCGATCGAGGCGAAAGACAAAAAGGTCTAAAGTTTGAGTTCTTAGGCATATCCCGGTGTAATTCAACCGAGACTGGAGTGAATTCTCATGCCATCTCGGGTGGGCTTGGGCTTGGGATTGGCGGTTATGGCAGATTGCAAGGCGTTTTGGAGTTGCTTGCAGAGGAGGCGATGAGTGTCTGCGGTGAGGCACGCGAGCTTGGGAAGCAGATGTTGGATGAGGTGGGCGGTGAAGTGTGCAGTGTTTTGGACGGCCTGCCTTGCGGTAAGAGATCCATGGCTTTCACATCCGATACTCAACTAAGAGACATTCAATCTCCTATATTTCTTCTCACCAATATTTGCAACCTCATCTCTATATGGCTCGATTCGTCCAACTATGTCCTTTGGAAATTTCAATTCTCCTCCATGTTGAAAGTGCACAAACTCTTCAGTTTTGTTGATGGGACGAATACATCTTCGGCCGCGAAGATTGCAGTTCAGATTGCTAAGGATCAAGCCCTTATGACGTTAATCAATACAATGTTATCTCCCAAAGCCGTGGCATATATCATTGGATGCACTTCATCCTATGGGTATGGACTACACTCGAGAAATATTACTCCTCCAATTCTTGGTCAAATATCGTAA

Protein sequence

MKDIKVLKKGIRAIRCFSDRGERQKGLKFEFLGISRCNSTETGVNSHAISGGLGLGIGGYGRLQGVLELLAEEAMSVCGEARELGKQMLDEVGGEVCSVLDGLPCGKRSMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGTNTSSAAKIAVQIAKDQALMTLINTMLSPKAVAYIIGCTSSYGYGLHSRNITPPILGQIS

Homology

[Close]

BLAST of PI0020049.1 vs. ExPASy TrEMBL
Match: A0A5D3CLI6 (T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.0e-20
Identity = 60/115 (52.17%), Postives = 79/115 (68.70%), Query Frame = 0


Query: 109 SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT- 168
           S    S +  +D  SPIFLL+NICNLIS+ LDS+N+VLWKFQ +++LK HKL+ F+DGT 
Sbjct: 4   STTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTN 63

Query: 169 -------NTSSAAKIAVQ--------IAKDQALMTLINTMLSPKAVAYIIGCTSS 208
                  N+SS + +  Q        IAKDQALMT+IN  LSP+A+AY++G TSS
Sbjct: 64  PCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSS 118

[Close]

BLAST of PI0020049.1 vs. ExPASy TrEMBL
Match: A0A1S3BI58 (uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.0e-20
Identity = 60/115 (52.17%), Postives = 79/115 (68.70%), Query Frame = 0


Query: 109 SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT- 168
           S    S +  +D  SPIFLL+NICNLIS+ LDS+N+VLWKFQ +++LK HKL+ F+DGT 
Sbjct: 4   STTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTN 63

Query: 169 -------NTSSAAKIAVQ--------IAKDQALMTLINTMLSPKAVAYIIGCTSS 208
                  N+SS + +  Q        IAKDQALMT+IN  LSP+A+AY++G TSS
Sbjct: 64  PCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSS 118

[Close]

BLAST of PI0020049.1 vs. ExPASy TrEMBL
Match: A0A1S4DWT9 (uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.0e-20
Identity = 60/115 (52.17%), Postives = 79/115 (68.70%), Query Frame = 0


Query: 109 SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT- 168
           S    S +  +D  SPIFLL+NICNLIS+ LDS+N+VLWKFQ +++LK HKL+ F+DGT 
Sbjct: 4   STTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTN 63

Query: 169 -------NTSSAAKIAVQ--------IAKDQALMTLINTMLSPKAVAYIIGCTSS 208
                  N+SS + +  Q        IAKDQALMT+IN  LSP+A+AY++G TSS
Sbjct: 64  PCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSS 118

[Close]

BLAST of PI0020049.1 vs. ExPASy TrEMBL
Match: A0A1S3BIR3 (uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.0e-20
Identity = 60/115 (52.17%), Postives = 79/115 (68.70%), Query Frame = 0


Query: 109 SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT- 168
           S    S +  +D  SPIFLL+NICNLIS+ LDS+N+VLWKFQ +++LK HKL+ F+DGT 
Sbjct: 4   STTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTN 63

Query: 169 -------NTSSAAKIAVQ--------IAKDQALMTLINTMLSPKAVAYIIGCTSS 208
                  N+SS + +  Q        IAKDQALMT+IN  LSP+A+AY++G TSS
Sbjct: 64  PCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSS 118

[Close]

BLAST of PI0020049.1 vs. ExPASy TrEMBL
Match: A0A6J1E049 (uncharacterized protein LOC111025150 OS=Momordica charantia OX=3673 GN=LOC111025150 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.5e-18
Identity = 54/108 (50.00%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 119 RDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGTNTSSAAKIAVQ 178
           +D+ SPIFLL+NICNL+S+ LDSSN+VLWKFQ +++LK HKL+ F+DG +T   A+  V 
Sbjct: 9   KDLSSPIFLLSNICNLVSLRLDSSNFVLWKFQLTAILKAHKLYGFIDG-STPKPAEFLVS 68

Query: 179 -------------------IAKDQALMTLINTMLSPKAVAYIIGCTSS 208
                              IAKD ALMTL+N  LS  A+AY++GC SS
Sbjct: 69  XXDXSSSXPPAANPAFSEWIAKDHALMTLLNAXLSSSALAYVVGCDSS 115

[Close]

BLAST of PI0020049.1 vs. NCBI nr
Match: KAE8645659.1 (hypothetical protein Csa_020439 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-20
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 109 SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGTN 168
           S    S +  +D  SPIFLL+NICNLIS+ LDS+N+VLWKFQ +++LK HKLF FVDGTN
Sbjct: 4   STTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLFGFVDGTN 63

Query: 169 ------TSSAAKIAVQ--------IAKDQALMTLINTMLSPKAVAYIIGCTSS 208
                  S+ + +  Q        IAKDQALMT+IN  LSP+A+AY++G TSS
Sbjct: 64  PCPQTSPSTTSTVPPQTNPLYEDWIAKDQALMTVINATLSPEALAYVVGSTSS 116

[Close]

BLAST of PI0020049.1 vs. NCBI nr
Match: XP_011658579.1 (uncharacterized protein LOC105436058 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-20
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 109 SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGTN 168
           S    S +  +D  SPIFLL+NICNLIS+ LDS+N+VLWKFQ +++LK HKLF FVDGTN
Sbjct: 4   STTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLFGFVDGTN 63

Query: 169 ------TSSAAKIAVQ--------IAKDQALMTLINTMLSPKAVAYIIGCTSS 208
                  S+ + +  Q        IAKDQALMT+IN  LSP+A+AY++G TSS
Sbjct: 64  PCPQTSPSTTSTVPPQTNPLYEDWIAKDQALMTVINATLSPEALAYVVGSTSS 116

[Close]

BLAST of PI0020049.1 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 4.2e-20
Identity = 60/115 (52.17%), Postives = 79/115 (68.70%), Query Frame = 0


Query: 109 SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT- 168
           S    S +  +D  SPIFLL+NICNLIS+ LDS+N+VLWKFQ +++LK HKL+ F+DGT 
Sbjct: 4   STTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTN 63

Query: 169 -------NTSSAAKIAVQ--------IAKDQALMTLINTMLSPKAVAYIIGCTSS 208
                  N+SS + +  Q        IAKDQALMT+IN  LSP+A+AY++G TSS
Sbjct: 64  PCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSS 118

[Close]

BLAST of PI0020049.1 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 4.2e-20
Identity = 60/115 (52.17%), Postives = 79/115 (68.70%), Query Frame = 0


Query: 109 SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT- 168
           S    S +  +D  SPIFLL+NICNLIS+ LDS+N+VLWKFQ +++LK HKL+ F+DGT 
Sbjct: 4   STTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTN 63

Query: 169 -------NTSSAAKIAVQ--------IAKDQALMTLINTMLSPKAVAYIIGCTSS 208
                  N+SS + +  Q        IAKDQALMT+IN  LSP+A+AY++G TSS
Sbjct: 64  PCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSS 118

[Close]

BLAST of PI0020049.1 vs. NCBI nr
Match: KAA0049700.1 (T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 4.2e-20
Identity = 60/115 (52.17%), Postives = 79/115 (68.70%), Query Frame = 0


Query: 109 SMAFTSDTQLRDIQSPIFLLTNICNLISIWLDSSNYVLWKFQFSSMLKVHKLFSFVDGT- 168
           S    S +  +D  SPIFLL+NICNLIS+ LDS+N+VLWKFQ +++LK HKL+ F+DGT 
Sbjct: 4   STTLPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTN 63

Query: 169 -------NTSSAAKIAVQ--------IAKDQALMTLINTMLSPKAVAYIIGCTSS 208
                  N+SS + +  Q        IAKDQALMT+IN  LSP+A+AY++G TSS
Sbjct: 64  PCPPRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSS 118

The following BLAST results are available for this feature:

BLAST of PI0020049.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0020049.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLI6	2.0e-20	52.17	T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=...	[more]
A0A1S3BI58	2.0e-20	52.17	uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DWT9	2.0e-20	52.17	uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BIR3	2.0e-20	52.17	uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1E049	5.5e-18	50.00	uncharacterized protein LOC111025150 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of PI0020049.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645659.1	3.2e-20	53.98	hypothetical protein Csa_020439 [Cucumis sativus]	[more]
XP_011658579.1	3.2e-20	53.98	uncharacterized protein LOC105436058 [Cucumis sativus]	[more]
XP_008448007.1	4.2e-20	52.17	PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]	[more]
XP_008448008.1	4.2e-20	52.17	PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]	[more]
KAA0049700.1	4.2e-20	52.17	T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa]	[more]

BLAST of PI0020049.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 133..168 e-value: 5.6E-8 score: 32.4

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0020049	PI0020049	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0020049.1-exon	PI0020049.1-exon-chr11:14307007..14307158	exon
PI0020049.1-exon	PI0020049.1-exon-chr11:14311044..14311214	exon
PI0020049.1-exon	PI0020049.1-exon-chr11:14312301..14312511	exon
PI0020049.1-exon	PI0020049.1-exon-chr11:14312587..14312733	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0020049.1-cds	PI0020049.1-cds-chr11:14307007..14307158	CDS
PI0020049.1-cds	PI0020049.1-cds-chr11:14311044..14311214	CDS
PI0020049.1-cds	PI0020049.1-cds-chr11:14312301..14312511	CDS
PI0020049.1-cds	PI0020049.1-cds-chr11:14312587..14312733	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0020049.1	PI0020049.1-protein	polypeptide