PI0018920.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0018920.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr06: 25673290 .. 25673751 (-)
Sequence length	462
RNA-Seq Expression	PI0018920.1
Synteny	PI0018920.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGATGTACCTATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAATACCTCCAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATGCCAGCTTTTGGAGCAGGGTATTGTGATTCTGAGGTCGGTACAGGATATAATGACTCAGGGGTTGGTTCATCGTCTTCATACATGGATGCCGGACCATCAACTTCTTACATGCATGGACATGGACACGGACGCGGCCGCGGAGAACATAACGAATATTTGTACTATGAAACACCTACAGACGTTCCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGATAGGGCAACCAAGAGTTCAGAGTCGACGACGACAACCAACCCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA

mRNA sequence

ATGTACGATGTACCTATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAATACCTCCAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATGCCAGCTTTTGGAGCAGGGTATTGTGATTCTGAGGTCGGTACAGGATATAATGACTCAGGGGTTGGTTCATCGTCTTCATACATGGATGCCGGACCATCAACTTCTTACATGCATGGACATGGACACGGACGCGGCCGCGGAGAACATAACGAATATTTGTACTATGAAACACCTACAGACGTTCCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGATAGGGCAACCAAGAGTTCAGAGTCGACGACGACAACCAACCCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA

Coding sequence (CDS)

ATGTACGATGTACCTATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAATACCTCCAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATGCCAGCTTTTGGAGCAGGGTATTGTGATTCTGAGGTCGGTACAGGATATAATGACTCAGGGGTTGGTTCATCGTCTTCATACATGGATGCCGGACCATCAACTTCTTACATGCATGGACATGGACACGGACGCGGCCGCGGAGAACATAACGAATATTTGTACTATGAAACACCTACAGACGTTCCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGATAGGGCAACCAAGAGTTCAGAGTCGACGACGACAACCAACCCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA

Protein sequence

MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYCDSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQQEPENQEEIGQPRVQSRRRQPTRNRRRPGCGTH

Homology

[Close]

BLAST of PI0018920.1 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.9e-60
Identity = 123/153 (80.39%), Postives = 130/153 (84.97%), Query Frame = 0


Query: 1   MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
           MYD+PIVPP V+RGRVRVEE ELDEVYHNVEE+PP TQTQSQTGYGSPMMMMP FGAGYC
Sbjct: 1   MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60

Query: 61  DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
           DSEV TGY D+G+G  SSYMD GPS SYM  HGHGRG GEHNEYLY+E P DV D QEYQ
Sbjct: 61  DSEVSTGYYDAGIGPLSSYMDVGPSNSYM--HGHGRGYGEHNEYLYHEAPADVSDRQEYQ 120

Query: 121 QEPENQEEIGQPRVQSRRRQPTRNRRRPGCGTH 154
           QEPENQE+  Q RVQSRRRQPTRNRR   CGTH
Sbjct: 121 QEPENQEDREQHRVQSRRRQPTRNRRHLSCGTH 151

[Close]

BLAST of PI0018920.1 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.3e-58
Identity = 121/153 (79.08%), Postives = 129/153 (84.31%), Query Frame = 0


Query: 1   MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
           MYD+PIVPPPV+RG VRVEE ELD+VYHNVEE+P  TQTQSQTGYGSPM MMP F AGYC
Sbjct: 72  MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 131

Query: 61  DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
           D EVG GY D+GVG SSSY+D  PSTSYM  HGH RG GEHNEYLY+E P DV D QEYQ
Sbjct: 132 DFEVGIGYYDAGVGPSSSYVDVSPSTSYM--HGHSRGYGEHNEYLYHEAPADVSDRQEYQ 191

Query: 121 QEPENQEEIGQPRVQSRRRQPTRNRRRPGCGTH 154
           QEPENQE+  Q RVQSRRRQPTRNRRRPGCGTH
Sbjct: 192 QEPENQEDREQHRVQSRRRQPTRNRRRPGCGTH 222

[Close]

BLAST of PI0018920.1 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.8e-57
Identity = 120/153 (78.43%), Postives = 128/153 (83.66%), Query Frame = 0


Query: 1   MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
           MYD+PIVPPPV+RG VRVEE ELD+VYHNVEE+P  TQTQSQTGYGSPM MMP F AGYC
Sbjct: 60  MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 119

Query: 61  DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
           D EVG GY D+GVG SSSY+D  PSTSYM  HGH RG GEHNEYLY+E P DV D QEYQ
Sbjct: 120 DFEVGIGYYDAGVGPSSSYVDVSPSTSYM--HGHRRGYGEHNEYLYHEAPADVSDRQEYQ 179

Query: 121 QEPENQEEIGQPRVQSRRRQPTRNRRRPGCGTH 154
           QEPENQE+  Q RVQSRRRQPTRNRR PGCGTH
Sbjct: 180 QEPENQEDREQHRVQSRRRQPTRNRRCPGCGTH 210

[Close]

BLAST of PI0018920.1 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.5e-56
Identity = 118/153 (77.12%), Postives = 128/153 (83.66%), Query Frame = 0


Query: 1   MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
           +YD+PIVPPPV+R R RVEE ELDEVYHNVEE+PP TQTQSQTGYGSPM MMP FGAGYC
Sbjct: 350 IYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 409

Query: 61  DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
           DSEV  GY D+ VG  SSYMD GPSTSYM  +GHGRG GEHNEYLY+E PTDV D QEYQ
Sbjct: 410 DSEVSIGYYDAVVGPLSSYMDVGPSTSYM--YGHGRGYGEHNEYLYHEAPTDVSDRQEYQ 469

Query: 121 QEPENQEEIGQPRVQSRRRQPTRNRRRPGCGTH 154
           QEP+NQE+  Q RVQSRRRQP RNR+  GCGTH
Sbjct: 470 QEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 500

[Close]

BLAST of PI0018920.1 vs. ExPASy TrEMBL
Match: A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.4e-48
Identity = 103/137 (75.18%), Postives = 113/137 (82.48%), Query Frame = 0


Query: 1   MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
           MY +PIVPP ++RGRV+VEE ELDEVYHNVEE+ P TQ Q+QTGYGSPM+MMP FG GYC
Sbjct: 69  MYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYC 128

Query: 61  DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
           D EV T Y DSGVG SSSYMD GPSTSYMHGH H    GEHNEYLY+E PT+V D QEYQ
Sbjct: 129 DFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRH--DYGEHNEYLYHEAPTEVSDRQEYQ 188

Query: 121 QEPENQEEIGQPRVQSR 138
           QEPENQEE+ Q RVQSR
Sbjct: 189 QEPENQEELEQHRVQSR 203

[Close]

BLAST of PI0018920.1 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 240.7 bits (613), Expect = 8.1e-60
Identity = 123/153 (80.39%), Postives = 130/153 (84.97%), Query Frame = 0


Query: 1   MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
           MYD+PIVPP V+RGRVRVEE ELDEVYHNVEE+PP TQTQSQTGYGSPMMMMP FGAGYC
Sbjct: 1   MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60

Query: 61  DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
           DSEV TGY D+G+G  SSYMD GPS SYM  HGHGRG GEHNEYLY+E P DV D QEYQ
Sbjct: 61  DSEVSTGYYDAGIGPLSSYMDVGPSNSYM--HGHGRGYGEHNEYLYHEAPADVSDRQEYQ 120

Query: 121 QEPENQEEIGQPRVQSRRRQPTRNRRRPGCGTH 154
           QEPENQE+  Q RVQSRRRQPTRNRR   CGTH
Sbjct: 121 QEPENQEDREQHRVQSRRRQPTRNRRHLSCGTH 151

[Close]

BLAST of PI0018920.1 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 235.7 bits (600), Expect = 2.6e-58
Identity = 121/153 (79.08%), Postives = 129/153 (84.31%), Query Frame = 0


Query: 1   MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
           MYD+PIVPPPV+RG VRVEE ELD+VYHNVEE+P  TQTQSQTGYGSPM MMP F AGYC
Sbjct: 72  MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 131

Query: 61  DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
           D EVG GY D+GVG SSSY+D  PSTSYM  HGH RG GEHNEYLY+E P DV D QEYQ
Sbjct: 132 DFEVGIGYYDAGVGPSSSYVDVSPSTSYM--HGHSRGYGEHNEYLYHEAPADVSDRQEYQ 191

Query: 121 QEPENQEEIGQPRVQSRRRQPTRNRRRPGCGTH 154
           QEPENQE+  Q RVQSRRRQPTRNRRRPGCGTH
Sbjct: 192 QEPENQEDREQHRVQSRRRQPTRNRRRPGCGTH 222

[Close]

BLAST of PI0018920.1 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 231.9 bits (590), Expect = 3.8e-57
Identity = 120/153 (78.43%), Postives = 128/153 (83.66%), Query Frame = 0


Query: 1   MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
           MYD+PIVPPPV+RG VRVEE ELD+VYHNVEE+P  TQTQSQTGYGSPM MMP F AGYC
Sbjct: 60  MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 119

Query: 61  DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
           D EVG GY D+GVG SSSY+D  PSTSYM  HGH RG GEHNEYLY+E P DV D QEYQ
Sbjct: 120 DFEVGIGYYDAGVGPSSSYVDVSPSTSYM--HGHRRGYGEHNEYLYHEAPADVSDRQEYQ 179

Query: 121 QEPENQEEIGQPRVQSRRRQPTRNRRRPGCGTH 154
           QEPENQE+  Q RVQSRRRQPTRNRR PGCGTH
Sbjct: 180 QEPENQEDREQHRVQSRRRQPTRNRRCPGCGTH 210

[Close]

BLAST of PI0018920.1 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 228.8 bits (582), Expect = 3.2e-56
Identity = 118/153 (77.12%), Postives = 128/153 (83.66%), Query Frame = 0


Query: 1   MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
           +YD+PIVPPPV+R R RVEE ELDEVYHNVEE+PP TQTQSQTGYGSPM MMP FGAGYC
Sbjct: 350 IYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 409

Query: 61  DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
           DSEV  GY D+ VG  SSYMD GPSTSYM  +GHGRG GEHNEYLY+E PTDV D QEYQ
Sbjct: 410 DSEVSIGYYDAVVGPLSSYMDVGPSTSYM--YGHGRGYGEHNEYLYHEAPTDVSDRQEYQ 469

Query: 121 QEPENQEEIGQPRVQSRRRQPTRNRRRPGCGTH 154
           QEP+NQE+  Q RVQSRRRQP RNR+  GCGTH
Sbjct: 470 QEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 500

[Close]

BLAST of PI0018920.1 vs. NCBI nr
Match: KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 7.1e-48
Identity = 103/137 (75.18%), Postives = 113/137 (82.48%), Query Frame = 0


Query: 1   MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
           MY +PIVPP ++RGRV+VEE ELDEVYHNVEE+ P TQ Q+QTGYGSPM+MMP FG GYC
Sbjct: 69  MYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYC 128

Query: 61  DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
           D EV T Y DSGVG SSSYMD GPSTSYMHGH H    GEHNEYLY+E PT+V D QEYQ
Sbjct: 129 DFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRH--DYGEHNEYLYHEAPTEVSDRQEYQ 188

Query: 121 QEPENQEEIGQPRVQSR 138
           QEPENQEE+ Q RVQSR
Sbjct: 189 QEPENQEELEQHRVQSR 203

The following BLAST results are available for this feature:

BLAST of PI0018920.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0018920.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXX3	3.9e-60	80.39	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7V342	1.3e-58	79.08	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3BSG8	1.8e-57	78.43	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3DJV7	1.5e-56	77.12	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7SLF8	3.4e-48	75.18	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of PI0018920.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049532.1	8.1e-60	80.39	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0062642.1	2.6e-58	79.08	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK01176.1	3.8e-57	78.43	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK23842.1	3.2e-56	77.12	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0025972.1	7.1e-48	75.18	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of PI0018920.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..153

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0018920	PI0018920	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0018920.1-exon	PI0018920.1-exon-chr06:25673290..25673751	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0018920.1-cds	PI0018920.1-cds-chr06:25673290..25673751	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0018920.1	PI0018920.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance