Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGATGTACCTATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAATACCTCCAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATGCCAGCTTTTGGAGCAGGGTATTGTGATTCTGAGGTCGGTACAGGATATAATGACTCAGGGGTTGGTTCATCGTCTTCATACATGGATGCCGGACCATCAACTTCTTACATGCATGGACATGGACACGGACGCGGCCGCGGAGAACATAACGAATATTTGTACTATGAAACACCTACAGACGTTCCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGATAGGGCAACCAAGAGTTCAGAGTCGACGACGACAACCAACCCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA
mRNA sequence
ATGTACGATGTACCTATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAATACCTCCAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATGCCAGCTTTTGGAGCAGGGTATTGTGATTCTGAGGTCGGTACAGGATATAATGACTCAGGGGTTGGTTCATCGTCTTCATACATGGATGCCGGACCATCAACTTCTTACATGCATGGACATGGACACGGACGCGGCCGCGGAGAACATAACGAATATTTGTACTATGAAACACCTACAGACGTTCCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGATAGGGCAACCAAGAGTTCAGAGTCGACGACGACAACCAACCCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA
Coding sequence (CDS)
ATGTACGATGTACCTATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCATAACGTAGAAGAAATACCTCCAGTGACACAAACACAGAGCCAAACTGGTTATGGTAGCCCGATGATGATGATGCCAGCTTTTGGAGCAGGGTATTGTGATTCTGAGGTCGGTACAGGATATAATGACTCAGGGGTTGGTTCATCGTCTTCATACATGGATGCCGGACCATCAACTTCTTACATGCATGGACATGGACACGGACGCGGCCGCGGAGAACATAACGAATATTTGTACTATGAAACACCTACAGACGTTCCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGATAGGGCAACCAAGAGTTCAGAGTCGACGACGACAACCAACCCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA
Protein sequence
MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYCDSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQQEPENQEEIGQPRVQSRRRQPTRNRRRPGCGTH
Homology
BLAST of PI0018920 vs. ExPASy TrEMBL
Match:
A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)
HSP 1 Score: 240.7 bits (613), Expect = 3.9e-60
Identity = 123/153 (80.39%), Postives = 130/153 (84.97%), Query Frame = 0
Query: 1 MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
MYD+PIVPP V+RGRVRVEE ELDEVYHNVEE+PP TQTQSQTGYGSPMMMMP FGAGYC
Sbjct: 1 MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60
Query: 61 DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
DSEV TGY D+G+G SSYMD GPS SYM HGHGRG GEHNEYLY+E P DV D QEYQ
Sbjct: 61 DSEVSTGYYDAGIGPLSSYMDVGPSNSYM--HGHGRGYGEHNEYLYHEAPADVSDRQEYQ 120
Query: 121 QEPENQEEIGQPRVQSRRRQPTRNRRRPGCGTH 154
QEPENQE+ Q RVQSRRRQPTRNRR CGTH
Sbjct: 121 QEPENQEDREQHRVQSRRRQPTRNRRHLSCGTH 151
BLAST of PI0018920 vs. ExPASy TrEMBL
Match:
A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)
HSP 1 Score: 235.7 bits (600), Expect = 1.3e-58
Identity = 121/153 (79.08%), Postives = 129/153 (84.31%), Query Frame = 0
Query: 1 MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
MYD+PIVPPPV+RG VRVEE ELD+VYHNVEE+P TQTQSQTGYGSPM MMP F AGYC
Sbjct: 72 MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 131
Query: 61 DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
D EVG GY D+GVG SSSY+D PSTSYM HGH RG GEHNEYLY+E P DV D QEYQ
Sbjct: 132 DFEVGIGYYDAGVGPSSSYVDVSPSTSYM--HGHSRGYGEHNEYLYHEAPADVSDRQEYQ 191
Query: 121 QEPENQEEIGQPRVQSRRRQPTRNRRRPGCGTH 154
QEPENQE+ Q RVQSRRRQPTRNRRRPGCGTH
Sbjct: 192 QEPENQEDREQHRVQSRRRQPTRNRRRPGCGTH 222
BLAST of PI0018920 vs. ExPASy TrEMBL
Match:
A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)
HSP 1 Score: 231.9 bits (590), Expect = 1.8e-57
Identity = 120/153 (78.43%), Postives = 128/153 (83.66%), Query Frame = 0
Query: 1 MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
MYD+PIVPPPV+RG VRVEE ELD+VYHNVEE+P TQTQSQTGYGSPM MMP F AGYC
Sbjct: 60 MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 119
Query: 61 DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
D EVG GY D+GVG SSSY+D PSTSYM HGH RG GEHNEYLY+E P DV D QEYQ
Sbjct: 120 DFEVGIGYYDAGVGPSSSYVDVSPSTSYM--HGHRRGYGEHNEYLYHEAPADVSDRQEYQ 179
Query: 121 QEPENQEEIGQPRVQSRRRQPTRNRRRPGCGTH 154
QEPENQE+ Q RVQSRRRQPTRNRR PGCGTH
Sbjct: 180 QEPENQEDREQHRVQSRRRQPTRNRRCPGCGTH 210
BLAST of PI0018920 vs. ExPASy TrEMBL
Match:
A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)
HSP 1 Score: 228.8 bits (582), Expect = 1.5e-56
Identity = 118/153 (77.12%), Postives = 128/153 (83.66%), Query Frame = 0
Query: 1 MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
+YD+PIVPPPV+R R RVEE ELDEVYHNVEE+PP TQTQSQTGYGSPM MMP FGAGYC
Sbjct: 350 IYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 409
Query: 61 DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
DSEV GY D+ VG SSYMD GPSTSYM +GHGRG GEHNEYLY+E PTDV D QEYQ
Sbjct: 410 DSEVSIGYYDAVVGPLSSYMDVGPSTSYM--YGHGRGYGEHNEYLYHEAPTDVSDRQEYQ 469
Query: 121 QEPENQEEIGQPRVQSRRRQPTRNRRRPGCGTH 154
QEP+NQE+ Q RVQSRRRQP RNR+ GCGTH
Sbjct: 470 QEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 500
BLAST of PI0018920 vs. ExPASy TrEMBL
Match:
A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)
HSP 1 Score: 201.1 bits (510), Expect = 3.4e-48
Identity = 103/137 (75.18%), Postives = 113/137 (82.48%), Query Frame = 0
Query: 1 MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
MY +PIVPP ++RGRV+VEE ELDEVYHNVEE+ P TQ Q+QTGYGSPM+MMP FG GYC
Sbjct: 69 MYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYC 128
Query: 61 DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
D EV T Y DSGVG SSSYMD GPSTSYMHGH H GEHNEYLY+E PT+V D QEYQ
Sbjct: 129 DFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRH--DYGEHNEYLYHEAPTEVSDRQEYQ 188
Query: 121 QEPENQEEIGQPRVQSR 138
QEPENQEE+ Q RVQSR
Sbjct: 189 QEPENQEELEQHRVQSR 203
BLAST of PI0018920 vs. NCBI nr
Match:
KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 240.7 bits (613), Expect = 8.1e-60
Identity = 123/153 (80.39%), Postives = 130/153 (84.97%), Query Frame = 0
Query: 1 MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
MYD+PIVPP V+RGRVRVEE ELDEVYHNVEE+PP TQTQSQTGYGSPMMMMP FGAGYC
Sbjct: 1 MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60
Query: 61 DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
DSEV TGY D+G+G SSYMD GPS SYM HGHGRG GEHNEYLY+E P DV D QEYQ
Sbjct: 61 DSEVSTGYYDAGIGPLSSYMDVGPSNSYM--HGHGRGYGEHNEYLYHEAPADVSDRQEYQ 120
Query: 121 QEPENQEEIGQPRVQSRRRQPTRNRRRPGCGTH 154
QEPENQE+ Q RVQSRRRQPTRNRR CGTH
Sbjct: 121 QEPENQEDREQHRVQSRRRQPTRNRRHLSCGTH 151
BLAST of PI0018920 vs. NCBI nr
Match:
KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 235.7 bits (600), Expect = 2.6e-58
Identity = 121/153 (79.08%), Postives = 129/153 (84.31%), Query Frame = 0
Query: 1 MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
MYD+PIVPPPV+RG VRVEE ELD+VYHNVEE+P TQTQSQTGYGSPM MMP F AGYC
Sbjct: 72 MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 131
Query: 61 DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
D EVG GY D+GVG SSSY+D PSTSYM HGH RG GEHNEYLY+E P DV D QEYQ
Sbjct: 132 DFEVGIGYYDAGVGPSSSYVDVSPSTSYM--HGHSRGYGEHNEYLYHEAPADVSDRQEYQ 191
Query: 121 QEPENQEEIGQPRVQSRRRQPTRNRRRPGCGTH 154
QEPENQE+ Q RVQSRRRQPTRNRRRPGCGTH
Sbjct: 192 QEPENQEDREQHRVQSRRRQPTRNRRRPGCGTH 222
BLAST of PI0018920 vs. NCBI nr
Match:
TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 231.9 bits (590), Expect = 3.8e-57
Identity = 120/153 (78.43%), Postives = 128/153 (83.66%), Query Frame = 0
Query: 1 MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
MYD+PIVPPPV+RG VRVEE ELD+VYHNVEE+P TQTQSQTGYGSPM MMP F AGYC
Sbjct: 60 MYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYC 119
Query: 61 DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
D EVG GY D+GVG SSSY+D PSTSYM HGH RG GEHNEYLY+E P DV D QEYQ
Sbjct: 120 DFEVGIGYYDAGVGPSSSYVDVSPSTSYM--HGHRRGYGEHNEYLYHEAPADVSDRQEYQ 179
Query: 121 QEPENQEEIGQPRVQSRRRQPTRNRRRPGCGTH 154
QEPENQE+ Q RVQSRRRQPTRNRR PGCGTH
Sbjct: 180 QEPENQEDREQHRVQSRRRQPTRNRRCPGCGTH 210
BLAST of PI0018920 vs. NCBI nr
Match:
TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 228.8 bits (582), Expect = 3.2e-56
Identity = 118/153 (77.12%), Postives = 128/153 (83.66%), Query Frame = 0
Query: 1 MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
+YD+PIVPPPV+R R RVEE ELDEVYHNVEE+PP TQTQSQTGYGSPM MMP FGAGYC
Sbjct: 350 IYDLPIVPPPVHRERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYC 409
Query: 61 DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
DSEV GY D+ VG SSYMD GPSTSYM +GHGRG GEHNEYLY+E PTDV D QEYQ
Sbjct: 410 DSEVSIGYYDAVVGPLSSYMDVGPSTSYM--YGHGRGYGEHNEYLYHEAPTDVSDRQEYQ 469
Query: 121 QEPENQEEIGQPRVQSRRRQPTRNRRRPGCGTH 154
QEP+NQE+ Q RVQSRRRQP RNR+ GCGTH
Sbjct: 470 QEPKNQEDREQHRVQSRRRQPARNRQCSGCGTH 500
BLAST of PI0018920 vs. NCBI nr
Match:
KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 201.1 bits (510), Expect = 7.1e-48
Identity = 103/137 (75.18%), Postives = 113/137 (82.48%), Query Frame = 0
Query: 1 MYDVPIVPPPVNRGRVRVEEPELDEVYHNVEEIPPVTQTQSQTGYGSPMMMMPAFGAGYC 60
MY +PIVPP ++RGRV+VEE ELDEVYHNVEE+ P TQ Q+QTGYGSPM+MMP FG GYC
Sbjct: 69 MYHLPIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYC 128
Query: 61 DSEVGTGYNDSGVGSSSSYMDAGPSTSYMHGHGHGRGRGEHNEYLYYETPTDVPDPQEYQ 120
D EV T Y DSGVG SSSYMD GPSTSYMHGH H GEHNEYLY+E PT+V D QEYQ
Sbjct: 129 DFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRH--DYGEHNEYLYHEAPTEVSDRQEYQ 188
Query: 121 QEPENQEEIGQPRVQSR 138
QEPENQEE+ Q RVQSR
Sbjct: 189 QEPENQEELEQHRVQSR 203
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3CXX3 | 3.9e-60 | 80.39 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5A7V342 | 1.3e-58 | 79.08 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3BSG8 | 1.8e-57 | 78.43 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5D3DJV7 | 1.5e-56 | 77.12 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7SLF8 | 3.4e-48 | 75.18 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0049532.1 | 8.1e-60 | 80.39 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| KAA0062642.1 | 2.6e-58 | 79.08 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| TYK01176.1 | 3.8e-57 | 78.43 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| TYK23842.1 | 3.2e-56 | 77.12 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| KAA0025972.1 | 7.1e-48 | 75.18 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
