PI0016014.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0016014.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr10: 3152754 .. 3153017 (+)
Sequence length	264
RNA-Seq Expression	PI0016014.1
Synteny	PI0016014.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAAAAGGTTGAAGATGATAGGGAGATTAGTGAAGCTAAGAGGATAGAAGCACAAGGAGGAGCAATTTTTCGTTTGACTCACGTAATTAATGGCTTGACAGATCGATTAGATAGGATGGAGGTAGCTTTAAGAAATCGTCACCAAGAGGATGTCTTGAATGAAGGAGTAAAAAATGAAGAAGATGAGGATAATGAAACTCTTTTAGCTGGACAAAATCAAAGGGGAAGGAGAGTGTTAGGGCAAGATAGACGAAGATGA

mRNA sequence

ATGAATCAAAAGGTTGAAGATGATAGGGAGATTAGTGAAGCTAAGAGGATAGAAGCACAAGGAGGAGCAATTTTTCGTTTGACTCACGTAATTAATGGCTTGACAGATCGATTAGATAGGATGGAGGTAGCTTTAAGAAATCGTCACCAAGAGGATGTCTTGAATGAAGGAGTAAAAAATGAAGAAGATGAGGATAATGAAACTCTTTTAGCTGGACAAAATCAAAGGGGAAGGAGAGTGTTAGGGCAAGATAGACGAAGATGA

Coding sequence (CDS)

ATGAATCAAAAGGTTGAAGATGATAGGGAGATTAGTGAAGCTAAGAGGATAGAAGCACAAGGAGGAGCAATTTTTCGTTTGACTCACGTAATTAATGGCTTGACAGATCGATTAGATAGGATGGAGGTAGCTTTAAGAAATCGTCACCAAGAGGATGTCTTGAATGAAGGAGTAAAAAATGAAGAAGATGAGGATAATGAAACTCTTTTAGCTGGACAAAATCAAAGGGGAAGGAGAGTGTTAGGGCAAGATAGACGAAGATGA

Protein sequence

MNQKVEDDREISEAKRIEAQGGAIFRLTHVINGLTDRLDRMEVALRNRHQEDVLNEGVKNEEDEDNETLLAGQNQRGRRVLGQDRRR

Homology

[Close]

BLAST of PI0016014.1 vs. ExPASy TrEMBL
Match: A0A0A0KC00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.5e-27
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  MNQKVEDDREISEAKRIEAQGGAIFRLTHVINGLTDRLDRMEVALRNRHQEDVLNEGVKN 60
          MN+K ++D +ISEAKRIEAQGGAI RLT VIN LT+RLDRMEVALRN HQ +VLNEGV+N
Sbjct: 1  MNKKAKNDGKISEAKRIEAQGGAIVRLTQVINDLTNRLDRMEVALRNHHQGEVLNEGVEN 60

Query: 61 EEDEDNETLLAGQNQRGRRVLGQDRRR 88
          EEDEDNET LAGQN RGRRVLGQ RRR
Sbjct: 61 EEDEDNETFLAGQNPRGRRVLGQGRRR 87

[Close]

BLAST of PI0016014.1 vs. ExPASy TrEMBL
Match: A0A0A0L0S3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.8e-23
Identity = 63/80 (78.75%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 1  MNQKVEDDREISEAKRIEAQGGAIFRLTHVINGLTDRLDRMEVALRNRHQEDVLNEGVKN 60
          MNQK ++D EISEA+RIEAQGGAI RLT VIN LTDRLDRM VALRNRHQ +VLNEGV+N
Sbjct: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60

Query: 61 EEDEDNETLLAGQNQRGRRV 81
          E+DEDNETLLA QN   RRV
Sbjct: 61 EKDEDNETLLARQNPTERRV 80

[Close]

BLAST of PI0016014.1 vs. ExPASy TrEMBL
Match: A0A5A7UDQ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27G00150 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.6e-10
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 41 MEVALRNRHQEDVLNEGVKNEEDEDNETLLAGQNQRGRRVLGQDRRR 88
          M+VALRN HQ +VLNEGV+N+EDEDNET+L GQN +GRRVLGQDRRR
Sbjct: 1  MKVALRNHHQGEVLNEGVENKEDEDNETILVGQNPKGRRVLGQDRRR 47

[Close]

BLAST of PI0016014.1 vs. ExPASy TrEMBL
Match: A0A6J1EHL9 (uncharacterized protein LOC111432615 OS=Cucurbita moschata OX=3662 GN=LOC111432615 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 47/88 (53.41%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 1  MNQKVEDDREISEAKRIEAQGGAIFRLTHVINGLTDRLDRMEVALRN-RHQEDVLNEGVK 60
          MNQ   +  EI+EA+  EAQ G I RL  VI+ LTDR++R+++AL N + +E +LNEGV+
Sbjct: 1  MNQDEGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIQIALGNLQGREVLLNEGVE 60

Query: 61 NEEDEDNETLLAGQNQRGRRVLGQDRRR 88
          NEED DN TLLAG + RG R +G+ R R
Sbjct: 61 NEED-DNVTLLAGHSPRGGRDVGRGRGR 87

[Close]

BLAST of PI0016014.1 vs. ExPASy TrEMBL
Match: A0A6J1ETN1 (uncharacterized protein LOC111436410 OS=Cucurbita moschata OX=3662 GN=LOC111436410 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08
Identity = 45/80 (56.25%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 1  MNQKVEDDREISEAKRIEAQGGAIFRLTHVINGLTDRLDRMEVALRN-RHQEDVLNEGVK 60
          MNQ   + REI+EA+  EAQ G I  L  VI+ LTDR++R+E+AL N + +E +LNEGV+
Sbjct: 1  MNQDGGNGREINEARWREAQVGTITCLNQVISTLTDRMERIEIALGNLQGREVLLNEGVE 60

Query: 61 NEEDEDNETLLAGQNQRGRR 80
          NEED DN TLLAG + RG R
Sbjct: 61 NEED-DNVTLLAGHSPRGGR 79

[Close]

BLAST of PI0016014.1 vs. NCBI nr
Match: KGN47250.1 (hypothetical protein Csa_016986 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 3.0e-27
Identity = 70/87 (80.46%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  MNQKVEDDREISEAKRIEAQGGAIFRLTHVINGLTDRLDRMEVALRNRHQEDVLNEGVKN 60
          MN+K ++D +ISEAKRIEAQGGAI RLT VIN LT+RLDRMEVALRN HQ +VLNEGV+N
Sbjct: 1  MNKKAKNDGKISEAKRIEAQGGAIVRLTQVINDLTNRLDRMEVALRNHHQGEVLNEGVEN 60

Query: 61 EEDEDNETLLAGQNQRGRRVLGQDRRR 88
          EEDEDNET LAGQN RGRRVLGQ RRR
Sbjct: 61 EEDEDNETFLAGQNPRGRRVLGQGRRR 87

[Close]

BLAST of PI0016014.1 vs. NCBI nr
Match: KAE8646857.1 (hypothetical protein Csa_020829, partial [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 8.8e-27
Identity = 71/87 (81.61%), Postives = 76/87 (87.36%), Query Frame = 0


Query: 1  MNQKVEDDREISEAKRIEAQGGAIFRLTHVINGLTDRLDRMEVALRNRHQEDVLNEGVKN 60
          MNQK ++  EISEA+RIEAQGGAI RLT VIN LTDRLDR+EVALRNRHQ  VLNEGV+N
Sbjct: 1  MNQKTKNSGEISEARRIEAQGGAIVRLTQVINDLTDRLDRIEVALRNRHQGQVLNEGVEN 60

Query: 61 EEDEDNETLLAGQNQRGRRVLGQDRRR 88
          EEDEDNETLLA QN RGRRVLGQ RRR
Sbjct: 61 EEDEDNETLLAIQNLRGRRVLGQGRRR 87

[Close]

BLAST of PI0016014.1 vs. NCBI nr
Match: KGN53741.1 (hypothetical protein Csa_015371 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 5.9e-23
Identity = 63/80 (78.75%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 1  MNQKVEDDREISEAKRIEAQGGAIFRLTHVINGLTDRLDRMEVALRNRHQEDVLNEGVKN 60
          MNQK ++D EISEA+RIEAQGGAI RLT VIN LTDRLDRM VALRNRHQ +VLNEGV+N
Sbjct: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVEN 60

Query: 61 EEDEDNETLLAGQNQRGRRV 81
          E+DEDNETLLA QN   RRV
Sbjct: 61 EKDEDNETLLARQNPTERRV 80

[Close]

BLAST of PI0016014.1 vs. NCBI nr
Match: XP_038888883.1 (uncharacterized protein LOC120078660 [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 50/88 (56.82%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 1  MNQKVEDDREISEAKRIEAQGGAIFRLTHVINGLTDRLDRMEVALRNRHQEDV-LNEGVK 60
          M+Q   D  E SEA+  EAQ G I RLT V+  L DR++RMEVALRN  Q ++  NE   
Sbjct: 1  MSQGEGDRVETSEARYREAQVGVITRLTKVVKSLIDRVERMEVALRNPQQGEMGCNEEFD 60

Query: 61 NEEDEDNETLLAGQNQRGRRVLGQDRRR 88
          NEED+DNETLL GQN RG  VLG+ R R
Sbjct: 61 NEEDDDNETLLVGQNSRGMGVLGRGRGR 88

[Close]

BLAST of PI0016014.1 vs. NCBI nr
Match: KAA0053330.1 (hypothetical protein E6C27_scaffold27G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 7.4e-10
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 41 MEVALRNRHQEDVLNEGVKNEEDEDNETLLAGQNQRGRRVLGQDRRR 88
          M+VALRN HQ +VLNEGV+N+EDEDNET+L GQN +GRRVLGQDRRR
Sbjct: 1  MKVALRNHHQGEVLNEGVENKEDEDNETILVGQNPKGRRVLGQDRRR 47

The following BLAST results are available for this feature:

BLAST of PI0016014.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0016014.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC00	1.5e-27	80.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1	[more]
A0A0A0L0S3	2.8e-23	78.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1	[more]
A0A5A7UDQ9	3.6e-10	78.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1EHL9	1.4e-09	53.41	uncharacterized protein LOC111432615 OS=Cucurbita moschata OX=3662 GN=LOC1114326...	[more]
A0A6J1ETN1	1.2e-08	56.25	uncharacterized protein LOC111436410 OS=Cucurbita moschata OX=3662 GN=LOC1114364...	[more]

BLAST of PI0016014.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47250.1	3.0e-27	80.46	hypothetical protein Csa_016986 [Cucumis sativus]	[more]
KAE8646857.1	8.8e-27	81.61	hypothetical protein Csa_020829, partial [Cucumis sativus]	[more]
KGN53741.1	5.9e-23	78.75	hypothetical protein Csa_015371 [Cucumis sativus]	[more]
XP_038888883.1	1.4e-11	56.82	uncharacterized protein LOC120078660 [Benincasa hispida]	[more]
KAA0053330.1	7.4e-10	78.72	hypothetical protein E6C27_scaffold27G00150 [Cucumis melo var. makuwa]	[more]

BLAST of PI0016014.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..87

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0016014	PI0016014	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0016014.1-exon	PI0016014.1-exon-chr10:3152754..3153017	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0016014.1-cds	PI0016014.1-cds-chr10:3152754..3153017	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0016014.1	PI0016014.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding