PI0014806.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0014806.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr12: 19277412 .. 19277660 (-)
Sequence length	249
RNA-Seq Expression	PI0014806.1
Synteny	PI0014806.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAACAATGATTTTTGGAGAGAAATTGATGGTTTTTATGTGTCTAATCCACCAATAGCTGGAGGGGAAGAAGTAGATGGATTTGCTTCCATGAGTGAAGCAACATCAAATACACAATCTACCGCACATGCATCAAATAGATCTAGTAAGAAAAGAGCAAGAAATGTGGACCCATTGGTAGCTGCAGTGAATGGTCCTGAGAATGTTATGAGCAAACATCTTTCAAGTACTAATGATAATATTTAA

mRNA sequence

ATGAACAACAATGATTTTTGGAGAGAAATTGATGGTTTTTATGTGTCTAATCCACCAATAGCTGGAGGGGAAGAAGTAGATGGATTTGCTTCCATGAGTGAAGCAACATCAAATACACAATCTACCGCACATGCATCAAATAGATCTAGTAAGAAAAGAGCAAGAAATGTGGACCCATTGGTAGCTGCAGTGAATGGTCCTGAGAATGTTATGAGCAAACATCTTTCAAGTACTAATGATAATATTTAA

Coding sequence (CDS)

ATGAACAACAATGATTTTTGGAGAGAAATTGATGGTTTTTATGTGTCTAATCCACCAATAGCTGGAGGGGAAGAAGTAGATGGATTTGCTTCCATGAGTGAAGCAACATCAAATACACAATCTACCGCACATGCATCAAATAGATCTAGTAAGAAAAGAGCAAGAAATGTGGACCCATTGGTAGCTGCAGTGAATGGTCCTGAGAATGTTATGAGCAAACATCTTTCAAGTACTAATGATAATATTTAA

Protein sequence

MNNNDFWREIDGFYVSNPPIAGGEEVDGFASMSEATSNTQSTAHASNRSSKKRARNVDPLVAAVNGPENVMSKHLSSTNDNI

Homology

[Close]

BLAST of PI0014806.1 vs. ExPASy TrEMBL
Match: A0A5A7TE82 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002380 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.6e-28
Identity = 68/82 (82.93%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 1  MNNNDFWREIDGFYVSNPPIAGGEEVDGFASMSEATSNTQSTAHASNRSSKKRARNVDPL 60
          MNNN FW E+DGFYV  PPI G EEVDGFASMSE T+NTQS AH SNRSSKKRAR+VDPL
Sbjct: 1  MNNNGFWIEMDGFYVRKPPIVGEEEVDGFASMSETTTNTQSIAHTSNRSSKKRARSVDPL 60

Query: 61 VAAVNGPENVMSKHLSSTNDNI 83
          VAAVNG ENVMSKHLSS NDNI
Sbjct: 61 VAAVNGLENVMSKHLSSANDNI 82

[Close]

BLAST of PI0014806.1 vs. ExPASy TrEMBL
Match: A0A0A0L2J4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099560 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.2e-11
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 10 IDGFYVSNPPIAGGEEVDGFASMSEATSNTQS-TAHASNRSSKKRARNVDPLVAAV 65
          +D FYV  PPI GGEEVDG+ASMSEAT+NTQS  AH SNR SKKRAR+VD LVA+V
Sbjct: 1  MDSFYVLEPPITGGEEVDGYASMSEATTNTQSYRAHTSNRFSKKRARSVDLLVASV 56

[Close]

BLAST of PI0014806.1 vs. NCBI nr
Match: KAA0041258.1 (hypothetical protein E6C27_scaffold128G002380 [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 7.5e-28
Identity = 68/82 (82.93%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 1  MNNNDFWREIDGFYVSNPPIAGGEEVDGFASMSEATSNTQSTAHASNRSSKKRARNVDPL 60
          MNNN FW E+DGFYV  PPI G EEVDGFASMSE T+NTQS AH SNRSSKKRAR+VDPL
Sbjct: 1  MNNNGFWIEMDGFYVRKPPIVGEEEVDGFASMSETTTNTQSIAHTSNRSSKKRARSVDPL 60

Query: 61 VAAVNGPENVMSKHLSSTNDNI 83
          VAAVNG ENVMSKHLSS NDNI
Sbjct: 61 VAAVNGLENVMSKHLSSANDNI 82

[Close]

BLAST of PI0014806.1 vs. NCBI nr
Match: KGN56195.1 (hypothetical protein Csa_009969 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 10 IDGFYVSNPPIAGGEEVDGFASMSEATSNTQS-TAHASNRSSKKRARNVDPLVAAV 65
          +D FYV  PPI GGEEVDG+ASMSEAT+NTQS  AH SNR SKKRAR+VD LVA+V
Sbjct: 1  MDSFYVLEPPITGGEEVDGYASMSEATTNTQSYRAHTSNRFSKKRARSVDLLVASV 56

[Close]

BLAST of PI0014806.1 vs. NCBI nr
Match: XP_038883815.1 (uncharacterized protein LOC120074677 [Benincasa hispida])

HSP 1 Score: 68.6 bits (166), Expect = 2.9e-08
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 1   MNNNDFWREIDGFYVSNPPIAGGEEVDGFASMSEATSNTQSTAH 45
           M+NNDFWR+  GFYV +PPI GGEEVDG  SMSEAT+N QS+AH
Sbjct: 89  MDNNDFWRDECGFYVPDPPIVGGEEVDGPTSMSEATTNIQSSAH 132

[Close]

BLAST of PI0014806.1 vs. NCBI nr
Match: XP_038895748.1 (uncharacterized protein LOC120083912 [Benincasa hispida])

HSP 1 Score: 60.8 bits (146), Expect = 6.1e-06
Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = 0


Query: 1   MNNNDFWREIDGFYVSNPPIAGGEEVDGFASMSEATSNTQSTAHASNRSSKKRARNVDPL 60
           M+NNDFWRE+D FYVS+PPI GG+EVDG   MSEA +N       +   S + A  V+  
Sbjct: 56  MDNNDFWREMDDFYVSHPPIVGGKEVDGPTLMSEAATN------VAEPESTREALKVEAK 115

Query: 61  VAAVNGPENVMSKHLSST 79
              +  P+N+ SK  S T
Sbjct: 116 AKGIK-PKNMDSKAWSFT 126

The following BLAST results are available for this feature:

BLAST of PI0014806.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0014806.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TE82	3.6e-28	82.93	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0L2J4	5.2e-11	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099560 PE=4 SV=1	[more]

BLAST of PI0014806.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041258.1	7.5e-28	82.93	hypothetical protein E6C27_scaffold128G002380 [Cucumis melo var. makuwa]	[more]
KGN56195.1	1.1e-10	75.00	hypothetical protein Csa_009969 [Cucumis sativus]	[more]
XP_038883815.1	2.9e-08	72.73	uncharacterized protein LOC120074677 [Benincasa hispida]	[more]
XP_038895748.1	6.1e-06	46.15	uncharacterized protein LOC120083912 [Benincasa hispida]	[more]

BLAST of PI0014806.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..82

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0014806	PI0014806	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0014806.1-exon	PI0014806.1-exon-chr12:19277412..19277660	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0014806.1-cds	PI0014806.1-cds-chr12:19277412..19277660	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0014806.1	PI0014806.1-protein	polypeptide