Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGCAAGACACTGGCTTGCTTCATCTTGCTAATTCTTCTATTTCTTCATATGGTGATGTTCAAAATTTTAGTGTTGTTACTGATGATGAATTTCATTTTTAGTTTTATATTTTTGAAACTTATGCTTGATTTTCTCCCGATTTCTTTATATATATATAGGGTTCATAGTCAAATTAAAAAAATTAACTTTTTTCTTGTTTTTTCAAAACTCTTGTAAATATGGGTAGAGAATGGAGGGTAAAACAAAGAAACTGAAATCATTTATTCTGGTAAGTAGGGTTCCAAAACATAGTTAGAAAGGCATTATCAATATGGTGGTCTCTTGGTGCACTAAATCATTTATTTTTTCGTAATTATGATGTATTTTGTTGCTCTAAATTGGAAAGTTTTCCTTTAGCCTCTCCTTTGTTGGTTTTATTTCTGATTGTGTGGCAATGAACGCTCCGATAATTATTCTTTTTGTGCCAATGATACATGATTTGCATGATGAAGATAATGATAGATGTGTCAATCTAATTGAGATATTCAAGTGTACTTACCAATCTCCTACCAAATCCTTAAGTTTCTTGTTGAAAAAAAATGTTTTAATATAAACTTAATTTTAAAAAATATAACGGTTATCAAACGGAGTATCAGTATCCACTTTTCTTGGCAAAAAAAAAAAAAAAAACTCACAAATTAACTTTCATATTTGCAGTTTGGTGAAGGAAGAATTGAAGCTTCCATGAGCGAAATTGTTGAGAAGAAGAAACAAATTGAGATGAATGATTTATTGAAGCAACATTATCAACTTCACAAAATCCCATCATAA
mRNA sequence
ATGGAGGGCAAGACACTGGCTTGCTTCATCTTGCTAATTCTTCTATTTCTTCATATGTTTGGTGAAGGAAGAATTGAAGCTTCCATGAGCGAAATTGTTGAGAAGAAGAAACAAATTGAGATGAATGATTTATTGAAGCAACATTATCAACTTCACAAAATCCCATCATAA
Coding sequence (CDS)
ATGGAGGGCAAGACACTGGCTTGCTTCATCTTGCTAATTCTTCTATTTCTTCATATGTTTGGTGAAGGAAGAATTGAAGCTTCCATGAGCGAAATTGTTGAGAAGAAGAAACAAATTGAGATGAATGATTTATTGAAGCAACATTATCAACTTCACAAAATCCCATCATAA
Protein sequence
MEGKTLACFILLILLFLHMFGEGRIEASMSEIVEKKKQIEMNDLLKQHYQLHKIPS
Homology
BLAST of PI0012410.1 vs. ExPASy TrEMBL
Match:
A0A1S3BFY1 (BURP domain-containing protein BNM2C-like OS=Cucumis melo OX=3656 GN=LOC103489595 PE=4 SV=1)
HSP 1 Score: 76.6 bits (187), Expect = 3.6e-11
Identity = 36/46 (78.26%), Postives = 43/46 (93.48%), Query Frame = 0
Query: 1 MEGKTLACFILLILLFLHMFGEGRIEASMSEIVEKKKQIEMNDLLK 47
MEG T++CFILL+LLFLHMF EGRIE+SMSEIVEK+KQIEMND ++
Sbjct: 1 MEGNTVSCFILLVLLFLHMFAEGRIESSMSEIVEKRKQIEMNDFIE 46
BLAST of PI0012410.1 vs. ExPASy TrEMBL
Match:
A0A0A0K7M9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G259370 PE=4 SV=1)
HSP 1 Score: 70.9 bits (172), Expect = 2.0e-09
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0
Query: 1 MEGKTLACFILLILLFLHMFGEGRIEASMSEIVEKKKQIEMND 44
MEG T+ACFILL LLFLHMF EGRIE+SMSEIV K+KQIE ND
Sbjct: 2 MEGNTVACFILLFLLFLHMFAEGRIESSMSEIVVKRKQIETND 44
BLAST of PI0012410.1 vs. NCBI nr
Match:
XP_008447041.1 (PREDICTED: BURP domain-containing protein BNM2C-like [Cucumis melo] >XP_008447042.1 PREDICTED: BURP domain-containing protein BNM2C-like [Cucumis melo])
HSP 1 Score: 76.6 bits (187), Expect = 7.4e-11
Identity = 36/46 (78.26%), Postives = 43/46 (93.48%), Query Frame = 0
Query: 1 MEGKTLACFILLILLFLHMFGEGRIEASMSEIVEKKKQIEMNDLLK 47
MEG T++CFILL+LLFLHMF EGRIE+SMSEIVEK+KQIEMND ++
Sbjct: 1 MEGNTVSCFILLVLLFLHMFAEGRIESSMSEIVEKRKQIEMNDFIE 46
BLAST of PI0012410.1 vs. NCBI nr
Match:
KAE8646135.1 (hypothetical protein Csa_016283 [Cucumis sativus])
HSP 1 Score: 70.9 bits (172), Expect = 4.1e-09
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0
Query: 1 MEGKTLACFILLILLFLHMFGEGRIEASMSEIVEKKKQIEMND 44
MEG T+ACFILL LLFLHMF EGRIE+SMSEIV K+KQIE ND
Sbjct: 2 MEGNTVACFILLFLLFLHMFAEGRIESSMSEIVVKRKQIETND 44
BLAST of PI0012410.1 vs. NCBI nr
Match:
XP_038887425.1 (BURP domain protein USPL1-like [Benincasa hispida])
HSP 1 Score: 58.5 bits (140), Expect = 2.1e-05
Identity = 33/48 (68.75%), Postives = 36/48 (75.00%), Query Frame = 0
Query: 1 MEGKTLA--CFILLILLFLHMFGEGRIEASMSEIVEKKKQIEMNDLLK 47
MEG LA CFI LILL+L MF EGRIEASM EI EK KQIEM D ++
Sbjct: 1 MEGSRLATNCFIFLILLYLPMFAEGRIEASMGEIDEKGKQIEMKDFIE 48
BLAST of PI0012410.1 vs. NCBI nr
Match:
XP_038888373.1 (BURP domain-containing protein BNM2C-like [Benincasa hispida])
HSP 1 Score: 53.9 bits (128), Expect = 5.1e-04
Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = 0
Query: 1 MEGKTLAC-FILLILLFLHMFGEGRIEASMSEIVEKKKQIEMNDLLK 47
MEG A FI LILLFL MF EGR+EASM EI EK KQIEM D ++
Sbjct: 1 MEGSRQASWFIFLILLFLLMFAEGRVEASMGEIDEKSKQIEMKDFIE 47
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A1S3BFY1 | 3.6e-11 | 78.26 | BURP domain-containing protein BNM2C-like OS=Cucumis melo OX=3656 GN=LOC10348959... | [more] |
| A0A0A0K7M9 | 2.0e-09 | 81.40 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G259370 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_008447041.1 | 7.4e-11 | 78.26 | PREDICTED: BURP domain-containing protein BNM2C-like [Cucumis melo] >XP_00844704... | [more] |
| KAE8646135.1 | 4.1e-09 | 81.40 | hypothetical protein Csa_016283 [Cucumis sativus] | [more] |
| XP_038887425.1 | 2.1e-05 | 68.75 | BURP domain protein USPL1-like [Benincasa hispida] | [more] |
| XP_038888373.1 | 5.1e-04 | 65.96 | BURP domain-containing protein BNM2C-like [Benincasa hispida] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| PI0012410 | PI0012410 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0012410.1-exon | PI0012410.1-exon-chr01:6548473..6548529 | exon |
| PI0012410.1-exon | PI0012410.1-exon-chr01:6549175..6549288 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0012410.1-cds | PI0012410.1-cds-chr01:6548473..6548529 | CDS |
| PI0012410.1-cds | PI0012410.1-cds-chr01:6549175..6549288 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0012410.1 | PI0012410.1-protein | polypeptide |
