PI0009913.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0009913.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like
Location	chr12: 15883985 .. 15884690 (+)
Sequence length	492
RNA-Seq Expression	PI0009913.1
Synteny	PI0009913.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAACACTCAAATGAAAGCAGCTTTAATCTTAATAATTATGATGATATATTTAGAACATCATCATCAAAGAATTGCAGTAGCAAAGTTGAGTGGTTGAAAAGGATGGTGAAGCTGATTGTGTTTTGTTTGGTTTTAGGGTTGTTTTTTTCTGTCTTCTCTTTATTTCCCCATTCCTTTAGTGTCTATTTTCAACTTTCCTCTTCTCCATTCTAAACCATGCCATGGAAAGAAAATACATGTTCTTAATTTGTAATATTGGAATTCTGTTTCTTCTTGCCACTTCCTCTGTTTCTTCTTCTTCCTCTTCTTTGGGAATTATTGTTCATTTCCCCATTCCCATCATCATCATCATCATCATCATCATGACAACTTATTTGAACATGATGTTGTAGTCGCTGCTGCCATTGATGAAGAATCTGATTCTGATCAGGCTCGAGAAGGAGGAGAAGAAGAAGAAGAAGAAAAGGAAGAAGCTGGAATTTGTAGAGGTGACTTATTAGAGGAAGAATTAGAAGAAGATGATGGGTGTTTTACAGATGAGGTTGAAGAAGAAGAAGAAGATCAAAAAGAAGGAAAAAGGAGAGAATTAGAGATAGTGGTGAGTACAGAGGAATTGAACAAGAAAATTGAAGACTTTATTAGAAAAATGAAGGAGGAAATGAGGATTGAAGCAGCTCAAACTCACCTCATTGCTGTGTAA

mRNA sequence

ATGGAACAACACTCAAATGAAAGCAGCTTTAATCTTAATAATTATGATGATATATTTAGAACATCATCATCAAAGAATTGCAGTAGCAAAGTTGAGTGGTTGAAAAGGATGGTGAAGCTGATTGTGTTTTGTTTGGTTTTAGGGTTGTTTTTTTCTGTCTTCTCTTTATTTCCCCATTCCTTTATCGCTGCTGCCATTGATGAAGAATCTGATTCTGATCAGGCTCGAGAAGGAGGAGAAGAAGAAGAAGAAGAAAAGGAAGAAGCTGGAATTTGTAGAGGTGACTTATTAGAGGAAGAATTAGAAGAAGATGATGGGTGTTTTACAGATGAGGTTGAAGAAGAAGAAGAAGATCAAAAAGAAGGAAAAAGGAGAGAATTAGAGATAGTGGTGAGTACAGAGGAATTGAACAAGAAAATTGAAGACTTTATTAGAAAAATGAAGGAGGAAATGAGGATTGAAGCAGCTCAAACTCACCTCATTGCTGTGTAA

Coding sequence (CDS)

ATGGAACAACACTCAAATGAAAGCAGCTTTAATCTTAATAATTATGATGATATATTTAGAACATCATCATCAAAGAATTGCAGTAGCAAAGTTGAGTGGTTGAAAAGGATGGTGAAGCTGATTGTGTTTTGTTTGGTTTTAGGGTTGTTTTTTTCTGTCTTCTCTTTATTTCCCCATTCCTTTATCGCTGCTGCCATTGATGAAGAATCTGATTCTGATCAGGCTCGAGAAGGAGGAGAAGAAGAAGAAGAAGAAAAGGAAGAAGCTGGAATTTGTAGAGGTGACTTATTAGAGGAAGAATTAGAAGAAGATGATGGGTGTTTTACAGATGAGGTTGAAGAAGAAGAAGAAGATCAAAAAGAAGGAAAAAGGAGAGAATTAGAGATAGTGGTGAGTACAGAGGAATTGAACAAGAAAATTGAAGACTTTATTAGAAAAATGAAGGAGGAAATGAGGATTGAAGCAGCTCAAACTCACCTCATTGCTGTGTAA

Protein sequence

MEQHSNESSFNLNNYDDIFRTSSSKNCSSKVEWLKRMVKLIVFCLVLGLFFSVFSLFPHSFIAAAIDEESDSDQAREGGEEEEEEKEEAGICRGDLLEEELEEDDGCFTDEVEEEEEDQKEGKRRELEIVVSTEELNKKIEDFIRKMKEEMRIEAAQTHLIAV

Homology

[Close]

BLAST of PI0009913.1 vs. ExPASy TrEMBL
Match: A0A0A0LVQ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173190 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 3.4e-30
Identity = 104/212 (49.06%), Postives = 118/212 (55.66%), Query Frame = 0


Query: 1   MEQHSNESSFNLNNYDDIFR-TSSSKNCSSKVEWLKRMVKLIVFCLVLGLFFSVFSLFPH 60
           MEQH +ESS NLNNYD IFR TSSSKNCSSKVEWLKRMVKL VFCL+LGLFFS+FSLFPH
Sbjct: 1   MEQHLSESSLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVKLTVFCLLLGLFFSLFSLFPH 60

Query: 61  SF---------------------------------------------------------- 120
           SF                                                          
Sbjct: 61  SFSVYFSTFLFSILTHAVERKYMFLICNIGILFLLATSSVSSSSSSSSFGNYCPFPHSRH 120

Query: 121 ------------IAAAIDEESDSDQAREGGEEEEEEKEEAGICRGDLLEEELEEDDGCFT 142
                        A A DEESDSD      +EEEEEKEE GICRG+LLEEELEED+GCFT
Sbjct: 121 NHHHNLFEHDVVAAVATDEESDSDHT----QEEEEEKEE-GICRGELLEEELEEDEGCFT 180

[Close]

BLAST of PI0009913.1 vs. ExPASy TrEMBL
Match: A0A6J1CN51 (nardilysin-like OS=Momordica charantia OX=3673 GN=LOC111012652 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-17
Identity = 96/218 (44.04%), Postives = 123/218 (56.42%), Query Frame = 0


Query: 1   MEQHSN----ESSFNLNNYDDIFRTSSSKNCSSKVEWLKRMVKLI----VFCLVLGLFFS 60
           ME+H      +SS +L N D + RT    N SSKV+ LK MVK +    VFCLV+ LF S
Sbjct: 1   MEEHPQAKDLDSSESL-NLDGMCRT----NWSSKVQRLKGMVKFVVSVCVFCLVVALFLS 60

Query: 61  VFSLFPHSF-----------------------------IAAAIDEESDS-----DQAREG 120
           +FSLFPHSF                             +A +  + S+S      + RE 
Sbjct: 61  LFSLFPHSFTLYFSLFSLLNHALDRNYMFLLCNGILLLLATSPLQHSNSIPHHHYELREE 120

Query: 121 GEEEEEEKEE---AGICRGDLLEE-------ELEEDDGCFTDEVEEEEEDQKEGKRRELE 164
            +EEE E ++   + I   DL          E E+D+GCFTDEVEEEEE+++  +  ELE
Sbjct: 121 EKEEEVEDDDDDTSAIHSADLAAVGPTSPIIEEEDDEGCFTDEVEEEEEEEEGKRSEELE 180

[Close]

BLAST of PI0009913.1 vs. ExPASy TrEMBL
Match: A0A6J1EH25 (X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111434039 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.3e-17
Identity = 101/245 (41.22%), Postives = 121/245 (49.39%), Query Frame = 0


Query: 9   SFNLNNYD--DIFRTSSSKNCSSKVEWLKRMVKLI----VFCLVLGLFFSVFSLFPHSF- 68
           + N+++Y+  D+ RTSS+ N    VE LKRMVK I    VF LVL LFFS FSLFPHSF 
Sbjct: 7   AINMDSYESLDLDRTSSTNN---NVERLKRMVKFIVSICVFSLVLALFFSFFSLFPHSFT 66

Query: 69  ------------------------------------------------------------ 128
                                                                       
Sbjct: 67  VYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDSSPSSSSSSSSSSFGYSSFSH 126

Query: 129 -----------IAAAID-EESDSDQAREGGEEEEEEKEEAGICRGDLLE----------E 164
                      +A A D  +SD  + +E  E E+E ++E      D  E          E
Sbjct: 127 SVHHDQFEHDLVADASDGYDSDESEEQEHEEHEDEHEDEHEDEHEDEHEDEHEDEHEEQE 186

[Close]

BLAST of PI0009913.1 vs. ExPASy TrEMBL
Match: A0A6P5WEK0 (histone chaperone ASF1-like OS=Durio zibethinus OX=66656 GN=LOC111274066 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-05
Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 68  EESDSDQAREGGEEEEEEKEEAGICRGDLLEEELEEDDGCFTDEVEEEEEDQKEGKRREL 127
           EE + ++  E  EEEE E E A I   D        + GCF      ++E+Q+EG   E+
Sbjct: 14  EEEEEEEEEEEEEEEERESEVAVIVEDD------GGESGCFV-----KQEEQQEGVEAEV 73

Query: 128 ---EIVVSTEELNKKIEDFIRKMKEEMRIEAAQTHLIAV 164
              E V STE+LN+K E+FIRKMKEE+RIEA Q HLIAV
Sbjct: 74  GANEEVTSTEDLNRKFEEFIRKMKEEIRIEAQQQHLIAV 101

[Close]

BLAST of PI0009913.1 vs. ExPASy TrEMBL
Match: A0A1S8AE58 (Uncharacterized protein OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.5e-04
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 69  ESDSDQAREGGEEEEEEKEEAGICRGDLLEEELEEDDGCFTDEVEE---EEEDQKEGKRR 128
           ++++++ RE  E+E+EE EE      +  EEE E +   F DEVEE   EEE+++E +  
Sbjct: 177 KTETEETRE--EQEKEEAEEESALLEEDGEEEAEAESSFFIDEVEEGEGEEEEEEEEEEE 236

Query: 129 ELEIVVSTEELNKKIEDFIRKMKEEMRIEAAQ 158
           E    +S EELNKK EDFIRKMKEE+RIEA Q
Sbjct: 237 EGNGKLSDEELNKKFEDFIRKMKEELRIEARQ 266

[Close]

BLAST of PI0009913.1 vs. NCBI nr
Match: XP_031736046.1 (uncharacterized protein LOC105434473 [Cucumis sativus] >KAE8652832.1 hypothetical protein Csa_022756 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 4.0e-49
Identity = 142/238 (59.66%), Postives = 149/238 (62.61%), Query Frame = 0


Query: 1   MEQHSNESSFNLNNYDDIFR-TSSSKNCSSKVEWLKRMVKLIVFCLVLGLFFSVFSLFPH 60
           MEQH +ESS NLNNYD IFR TSSSKNCSSKVEWLKRMVKL VFCL+LGLFFS+FSLFPH
Sbjct: 1   MEQHLSESSLNLNNYDVIFRSTSSSKNCSSKVEWLKRMVKLTVFCLLLGLFFSLFSLFPH 60

Query: 61  SF---------------------------------------------------------- 120
           SF                                                          
Sbjct: 61  SFSVYFSTFLFSILTHAVERKYMFLICNIGILFLLATSSVSSSSSSSSFGNYCPFPHSRH 120

Query: 121 ------------IAAAIDEESDSDQAREGGEEEEEEKEEAGICRGDLLEEELEEDDGCFT 164
                        A A DEESDSD      +EEEEEKEE GICRG+LLEEELEED+GCFT
Sbjct: 121 NHHHNLFEHDVVAAVATDEESDSDHT----QEEEEEKEE-GICRGELLEEELEEDEGCFT 180

[Close]

BLAST of PI0009913.1 vs. NCBI nr
Match: XP_038877796.1 (glutamic acid-rich protein-like [Benincasa hispida])

HSP 1 Score: 134.8 bits (338), Expect = 6.7e-28
Identity = 106/227 (46.70%), Postives = 122/227 (53.74%), Query Frame = 0


Query: 6   NESSFNLNNYDDIFRTSSSK-NCSSKVEWLKRMVKLIVFCLVLGLFFSVFSLFPHSF--- 65
           +  S NL + DD  RTSS   NC SKVE L RMVK  VF LVL LFFS FSLFPHSF   
Sbjct: 12  SNQSLNLYDDDDDIRTSSKDYNCCSKVEMLIRMVKFTVFSLVLALFFSFFSLFPHSFSVY 71

Query: 66  ------------------------------------------------------------ 125
                                                                       
Sbjct: 72  FSTFMFSLLNHAMERKYMFLICNGILFLLATSSVIEDSSSSSSSFGTCSFNSHSDHHHHH 131

Query: 126 -----IAAAIDEESDSDQAREGGEEEEEEKEEAGICRGDLLEEELEEDDGCFTDEVEEEE 164
                + AAID     +  ++  EEEEEE+EE      D LEEE+EED+GCFTDEVE+++
Sbjct: 132 QLEHDLVAAIDGSDSEESVQQNQEEEEEEEEE---IHRDELEEEMEEDEGCFTDEVEDDD 191

[Close]

BLAST of PI0009913.1 vs. NCBI nr
Match: KAG7019366.1 (hypothetical protein SDJN02_18326, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-17
Identity = 97/235 (41.28%), Postives = 118/235 (50.21%), Query Frame = 0


Query: 9   SFNLNNYD--DIFRTSSSKNCSSKVEWLKRMVKLI----VFCLVLGLFFSVFSLFPHSF- 68
           + N+++Y+  D+ RTSS+ N    VE LKRMVK I    VF LVL LFFS FSLFPHSF 
Sbjct: 7   AINMDSYESLDLDRTSSTSN---NVERLKRMVKFIVSICVFSLVLALFFSFFSLFPHSFT 66

Query: 69  ------------------------------------------------------------ 128
                                                                       
Sbjct: 67  VYFSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDASPSSSSSSSSSFGYCSFSHS 126

Query: 129 ---------IAAAIDEESDSDQAREGGEEEEEEKEEAGICRGDLLEEELEEDDGCFTDEV 164
                    + A   +  DSD++ E   E+E E E          +EE EED+GCFT+EV
Sbjct: 127 VHHDQFEHDLVADASDGYDSDESEEQEHEDEHEDEHEDEHEE---QEEDEEDEGCFTEEV 186

[Close]

BLAST of PI0009913.1 vs. NCBI nr
Match: KAG6583719.1 (hypothetical protein SDJN03_19651, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.0 bits (245), Expect = 4.0e-17
Identity = 98/239 (41.00%), Postives = 120/239 (50.21%), Query Frame = 0


Query: 11  NLNNYD--DIFRTSSSKNCSSKVEWLKRMVKLI----VFCLVLGLFFSVFSLFPHSF--- 70
           N+++Y+  D+ RTSS+ N    VE LKRMVK I    VF LVL LFFS FS+FPHSF   
Sbjct: 9   NMDSYESLDLDRTSSTSN---NVERLKRMVKFIVSICVFSLVLALFFSFFSVFPHSFTVY 68

Query: 71  ------------------------------------------------------------ 130
                                                                       
Sbjct: 69  FSTFLFSLLNHGMERKFMFLICNGILFLLATSSVLQDASPSSSSSSSSSFGYCSFSHSVH 128

Query: 131 --------IAAAID----EESDSDQAREGGEEEEEEKEEAGICRGDLLEEELEEDDGCFT 164
                   +A A D    +ES+  +  E  +E E+E EE         +EE EED+GCFT
Sbjct: 129 HDQFEHDLVADASDGYDSDESEEQEHEEHEDEHEDEHEE---------QEEDEEDEGCFT 188

[Close]

BLAST of PI0009913.1 vs. NCBI nr
Match: XP_022142572.1 (nardilysin-like [Momordica charantia])

HSP 1 Score: 98.6 bits (244), Expect = 5.3e-17
Identity = 96/218 (44.04%), Postives = 123/218 (56.42%), Query Frame = 0


Query: 1   MEQHSN----ESSFNLNNYDDIFRTSSSKNCSSKVEWLKRMVKLI----VFCLVLGLFFS 60
           ME+H      +SS +L N D + RT    N SSKV+ LK MVK +    VFCLV+ LF S
Sbjct: 1   MEEHPQAKDLDSSESL-NLDGMCRT----NWSSKVQRLKGMVKFVVSVCVFCLVVALFLS 60

Query: 61  VFSLFPHSF-----------------------------IAAAIDEESDS-----DQAREG 120
           +FSLFPHSF                             +A +  + S+S      + RE 
Sbjct: 61  LFSLFPHSFTLYFSLFSLLNHALDRNYMFLLCNGILLLLATSPLQHSNSIPHHHYELREE 120

Query: 121 GEEEEEEKEE---AGICRGDLLEE-------ELEEDDGCFTDEVEEEEEDQKEGKRRELE 164
            +EEE E ++   + I   DL          E E+D+GCFTDEVEEEEE+++  +  ELE
Sbjct: 121 EKEEEVEDDDDDTSAIHSADLAAVGPTSPIIEEEDDEGCFTDEVEEEEEEEEGKRSEELE 180

The following BLAST results are available for this feature:

BLAST of PI0009913.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0009913.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVQ2	3.4e-30	49.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173190 PE=4 SV=1	[more]
A0A6J1CN51	2.6e-17	44.04	nardilysin-like OS=Momordica charantia OX=3673 GN=LOC111012652 PE=4 SV=1	[more]
A0A6J1EH25	3.3e-17	41.22	X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like OS=Cuc...	[more]
A0A6P5WEK0	3.8e-05	47.47	histone chaperone ASF1-like OS=Durio zibethinus OX=66656 GN=LOC111274066 PE=4 SV...	[more]
A0A1S8AE58	2.5e-04	48.91	Uncharacterized protein OS=Citrus limon OX=2708 PE=4 SV=1	[more]

BLAST of PI0009913.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031736046.1	4.0e-49	59.66	uncharacterized protein LOC105434473 [Cucumis sativus] >KAE8652832.1 hypothetica...	[more]
XP_038877796.1	6.7e-28	46.70	glutamic acid-rich protein-like [Benincasa hispida]	[more]
KAG7019366.1	1.1e-17	41.28	hypothetical protein SDJN02_18326, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6583719.1	4.0e-17	41.00	hypothetical protein SDJN03_19651, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022142572.1	5.3e-17	44.04	nardilysin-like [Momordica charantia]	[more]

BLAST of PI0009913.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..125
None	No IPR available	PANTHER	PTHR34947	TRANSMEMBRANE PROTEIN	coord: 23..63
None	No IPR available	PANTHER	PTHR34947:SF4	PROTEIN, PUTATIVE-RELATED	coord: 23..63 coord: 69..161
None	No IPR available	PANTHER	PTHR34947	TRANSMEMBRANE PROTEIN	coord: 69..161

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0009913	PI0009913	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0009913.1-exon	PI0009913.1-exon-chr12:15883985..15884168	exon
PI0009913.1-exon	PI0009913.1-exon-chr12:15884383..15884690	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0009913.1-cds	PI0009913.1-cds-chr12:15883985..15884168	CDS
PI0009913.1-cds	PI0009913.1-cds-chr12:15884383..15884690	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0009913.1	PI0009913.1-protein	polypeptide