PI0009499.1 (mRNA) Melon (PI 482460) v1

Overview
NamePI0009499.1
TypemRNA
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionElongation factor Tu
Locationchr02: 24624561 .. 24625994 (+)
Sequence length1347
RNA-Seq ExpressionPI0009499.1
SyntenyPI0009499.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCCATTTCCTTAGCTTCCGTTTCCACTTCTTCTAAGCTTGTTTTCCCCCACCCTTCTTCTTCTTCTTCTACTACTTCTTCTTCTTCCCTTTCTTCTTCCCTCCTCTCCAAACCCTCTTCCAACCTTTCTTCCTCTTTCTTGAACCCTTCTTCAATTCGTCCTCTCTCCTTCTCTTCCCCTTCTGTAAACCGTCCTCGTTCCTTCACAATTCGTGCCGCTCGTGGGAAATTTGAGAGGAAGAAACCCCATGTCAATATTGGCACAATTGGCCATGTCGACCATGGTAAAACCACTCTCACTGCTGCTTTAACCATGGCTTTAAGCAAAGCCCAAAGAAATACGATGAAATTGACGCTGCCCCAGAAGAACGAGCTCGTGGTATTACGATTAATACAGCTACTGTTGAGTACGAGACTGAGAGTCGACATTATGCTCATGTTGATTGTCCTGGACATGCTGATTATGTCAAGAATATGATTACTGGTGCTGCGCAAATGGATGGAGCGATTTTGGTTGTTTCTGGTGCTGATGGTCCAATGCCACAGACCAAGGAGCATATTTTGTTGGCTAAGCAAGTGGGTGTTCCTAATATGGTGGTGTTTTTGAACAAGAAGGATCAAGTTGATGATGAGGAGCTTTTGGAGCTTGTGGAGTTGGAGATGCGTGAGTTGCTTTCTTCTTATGAATTCCCAGGTGATGATGTACCAATTATTGCTGGTTCTGCTTTGTTAGCTTTGGAAGCTTTAATGGCTAACAATAATATAGCTAGAGGTGAAAATGAATGGGTGGATAAAATTTTTGAACTTATGGATGCTGTTGATAGTTATATACCAATACCTGAAAGACAAACAGATCTTCCATTTTTGCTTGCTGTTGAAGATGTGTTCTCTATTACTGGTCGTGGTACTGTTGCTACAGGGCGTGTTGAAAGAGGAACCGTTAGAGTGGGAGAGACAGTGGATATTGTGGGATTGAGGGAAACTAGAAACACAACTGTAACAGGGGTGGAAATGTTTCAAAAAATTCTTGATGAGGCTTTGGCTGGGGATAATGTTGGTTGTTGCTTCGAGGTGTTCAGAAGGCTGATATCCAAAGAGGGATGGTTTTAGCCAAGCCTGGCACTATCACCCACATACCAAGTTTAGTGCAGTTGTGTATGTGTTGAAGAAGGAAGAGGGTGGTAGACATTCACCCTTTTTCGCTGGTTACAGACCGCAATTCTATATGAGGACGACTGATGTCACTGGCAAGGTGTCTTCAATTATGAATGACAAGGACGAGGAGTCGAAAATGGTTATGCCGGGAGACCGAGTGAAAATGGTTGTGGAACTGATTATGCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATCAGAGAAGGTGGAAAGACTGTTGGTGCTGGTGTGATTCAATCAATTATCGAGTGA

mRNA sequence

ATGGCGGCCATTTCCTTAGCTTCCGTTTCCACTTCTTCTAAGCTTGTTTTCCCCCACCCTTCTTCTTCTTCTTCTACTACTTCTTCTTCTTCCCTTTCTTCTTCCCTCCTCTCCAAACCCTCTTCCAACCTTTCTTCCTCTTTCTTGAACCCTTCTTCAATTCGTCCTCTCTCCTTCTCTTCCCCTTCTGTAAACCGTCCTCGTTCCTTCACAATTCGTGCCGCTCGTGGGAAATTTGAGAGGAAGAAACCCCATGTCAATATTGGCACAATTGGCCATCAAAGCCCAAAGAAATACGATGAAATTGACGCTGCCCCAGAAGAACGAGCTCGTGGTATTACGATTAATACAGCTACTGTTGAGTACGAGACTGAGAGTCGACATTATGCTCATGTTGATTGTCCTGGACATGCTGATTATGTCAAGAATATGATTACTGGTGCTGCGCAAATGGATGGAGCGATTTTGGTTGTTTCTGGTGCTGATGGTCCAATGCCACAGACCAAGGAGCATATTTTGTTGGCTAAGCAAGTGGGTGTTCCTAATATGGTGGTGTTTTTGAACAAGAAGGATCAAGTTGATGATGAGGAGCTTTTGGAGCTTGTGGAGTTGGAGATGCGTGAGTTGCTTTCTTCTTATGAATTCCCAGGTGATGATGTACCAATTATTGCTGGTTCTGCTTTGTTAGCTTTGGAAGCTTTAATGGCTAACAATAATATAGCTAGAGGTGAAAATGAATGGGTGGATAAAATTTTTGAACTTATGGATGCTGTTGATAGTTATATACCAATACCTGAAAGACAAACAGATCTTCCATTTTTGCTTGCTGTTGAAGATGTGTTCTCTATTACTGGTCGTGGTACTGTTGCTACAGGGCGTGTTGAAAGAGGAACCGTTAGAGTGGGAGAGACAGTGGATATTGTGGGATTGAGGGAAACTAGAAACACAACTGTAACAGGGGTGGAAATGTTTCAAAAAATTCTTGATGAGGCTTTGGCTGGGGATAATGTTGGTTGTTGCTTCGAGGTCCAAGCCTGGCACTATCACCCACATACCAAGTTTAGTGCAGTTGTGTATGTGTTGAAGAAGGAAGAGGGTGGTAGACATTCACCCTTTTTCGCTGGTTACAGACCGCAATTCTATATGAGGACGACTGATGTCACTGGCAAGGTGTCTTCAATTATGAATGACAAGGACGAGGAGTCGAAAATGGTTATGCCGGGAGACCGAGTGAAAATGGTTGTGGAACTGATTATGCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATCAGAGAAGGTGGAAAGACTGTTGGTGCTGGTGTGATTCAATCAATTATCGAGTGA

Coding sequence (CDS)

ATGGCGGCCATTTCCTTAGCTTCCGTTTCCACTTCTTCTAAGCTTGTTTTCCCCCACCCTTCTTCTTCTTCTTCTACTACTTCTTCTTCTTCCCTTTCTTCTTCCCTCCTCTCCAAACCCTCTTCCAACCTTTCTTCCTCTTTCTTGAACCCTTCTTCAATTCGTCCTCTCTCCTTCTCTTCCCCTTCTGTAAACCGTCCTCGTTCCTTCACAATTCGTGCCGCTCGTGGGAAATTTGAGAGGAAGAAACCCCATGTCAATATTGGCACAATTGGCCATCAAAGCCCAAAGAAATACGATGAAATTGACGCTGCCCCAGAAGAACGAGCTCGTGGTATTACGATTAATACAGCTACTGTTGAGTACGAGACTGAGAGTCGACATTATGCTCATGTTGATTGTCCTGGACATGCTGATTATGTCAAGAATATGATTACTGGTGCTGCGCAAATGGATGGAGCGATTTTGGTTGTTTCTGGTGCTGATGGTCCAATGCCACAGACCAAGGAGCATATTTTGTTGGCTAAGCAAGTGGGTGTTCCTAATATGGTGGTGTTTTTGAACAAGAAGGATCAAGTTGATGATGAGGAGCTTTTGGAGCTTGTGGAGTTGGAGATGCGTGAGTTGCTTTCTTCTTATGAATTCCCAGGTGATGATGTACCAATTATTGCTGGTTCTGCTTTGTTAGCTTTGGAAGCTTTAATGGCTAACAATAATATAGCTAGAGGTGAAAATGAATGGGTGGATAAAATTTTTGAACTTATGGATGCTGTTGATAGTTATATACCAATACCTGAAAGACAAACAGATCTTCCATTTTTGCTTGCTGTTGAAGATGTGTTCTCTATTACTGGTCGTGGTACTGTTGCTACAGGGCGTGTTGAAAGAGGAACCGTTAGAGTGGGAGAGACAGTGGATATTGTGGGATTGAGGGAAACTAGAAACACAACTGTAACAGGGGTGGAAATGTTTCAAAAAATTCTTGATGAGGCTTTGGCTGGGGATAATGTTGGTTGTTGCTTCGAGGTCCAAGCCTGGCACTATCACCCACATACCAAGTTTAGTGCAGTTGTGTATGTGTTGAAGAAGGAAGAGGGTGGTAGACATTCACCCTTTTTCGCTGGTTACAGACCGCAATTCTATATGAGGACGACTGATGTCACTGGCAAGGTGTCTTCAATTATGAATGACAAGGACGAGGAGTCGAAAATGGTTATGCCGGGAGACCGAGTGAAAATGGTTGTGGAACTGATTATGCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATCAGAGAAGGTGGAAAGACTGTTGGTGCTGGTGTGATTCAATCAATTATCGAGTGA

Protein sequence

MAAISLASVSTSSKLVFPHPSSSSSTTSSSSLSSSLLSKPSSNLSSSFLNPSSIRPLSFSSPSVNRPRSFTIRAARGKFERKKPHVNIGTIGHQSPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKKDQVDDEELLELVELEMRELLSSYEFPGDDVPIIAGSALLALEALMANNNIARGENEWVDKIFELMDAVDSYIPIPERQTDLPFLLAVEDVFSITGRGTVATGRVERGTVRVGETVDIVGLRETRNTTVTGVEMFQKILDEALAGDNVGCCFEVQAWHYHPHTKFSAVVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q434673.4e-19476.04Elongation factor Tu, chloroplastic OS=Glycine max OX=3847 GN=TUFA PE=3 SV=1[more]
P462801.6e-19175.00Elongation factor Tu, chloroplastic OS=Glycine max OX=3847 GN=TUFB1 PE=3 SV=1[more]
Q433641.9e-18974.74Elongation factor TuB, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=TUFB PE=... [more]
O243108.1e-18873.36Elongation factor Tu, chloroplastic OS=Pisum sativum OX=3888 GN=tufA PE=2 SV=1[more]
Q404501.4e-18773.44Elongation factor TuA, chloroplastic OS=Nicotiana sylvestris OX=4096 GN=TUFA PE=... [more]
Match NameE-valueIdentityDescription
A0A5A7URR72.1e-22388.96Elongation factor Tu OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350... [more]
A0A1S3CLM52.1e-22388.96Elongation factor Tu OS=Cucumis melo OX=3656 GN=LOC103502373 PE=3 SV=1[more]
A0A6J1E4U08.4e-21284.71Elongation factor Tu OS=Cucurbita moschata OX=3662 GN=LOC111429936 PE=3 SV=1[more]
A0A6J1C0N21.1e-21185.09Elongation factor Tu OS=Momordica charantia OX=3673 GN=LOC111007263 PE=3 SV=1[more]
A0A6J1JDL11.4e-21184.73Elongation factor Tu OS=Cucurbita maxima OX=3661 GN=LOC111484851 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
XP_004138088.21.2e-22388.59elongation factor Tu, chloroplastic [Cucumis sativus] >KAE8652395.1 hypothetical... [more]
XP_008464512.14.4e-22388.96PREDICTED: elongation factor Tu, chloroplastic [Cucumis melo] >KAA0057820.1 elon... [more]
XP_038879216.12.3e-21987.50elongation factor Tu, chloroplastic [Benincasa hispida][more]
KAG6589415.11.6e-21285.45Elongation factor Tu, chloroplastic, partial [Cucurbita argyrosperma subsp. soro... [more]
XP_023516393.14.6e-21285.33elongation factor Tu, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT4G20360.14.3e-18473.03RAB GTPase homolog E1B [more]
AT4G02930.19.4e-12354.45GTP binding Elongation factor Tu family protein [more]
AT1G07920.16.5e-3129.87GTP binding Elongation factor Tu family protein [more]
AT1G07930.16.5e-3129.87GTP binding Elongation factor Tu family protein [more]
AT1G07940.16.5e-3129.87GTP binding Elongation factor Tu family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004541Translation elongation factor EFTu/EF1A, bacterial/organelleTIGRFAMTIGR00485TIGR00485coord: 96..448
e-value: 4.1E-181
score: 599.9
NoneNo IPR availableGENE3D2.40.30.10Translation factorscoord: 350..448
e-value: 1.9E-40
score: 139.1
NoneNo IPR availableGENE3D2.40.30.10Translation factorscoord: 269..348
e-value: 1.7E-23
score: 84.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45
NoneNo IPR availablePANTHERPTHR43721ELONGATION FACTOR TU-RELATEDcoord: 31..448
NoneNo IPR availablePANTHERPTHR43721:SF5ELONGATION FACTOR TU, CHLOROPLASTICcoord: 31..448
NoneNo IPR availableCDDcd03707EFTU_IIIcoord: 349..443
e-value: 7.66166E-55
score: 175.393
IPR004161Translation elongation factor EFTu-like, domain 2PFAMPF03144GTP_EFTU_D2coord: 287..339
e-value: 8.7E-13
score: 48.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 75..265
e-value: 4.4E-58
score: 198.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 78..281
IPR000795Translational (tr)-type GTP-binding domainPFAMPF00009GTP_EFTUcoord: 95..263
e-value: 1.7E-42
score: 145.2
IPR000795Translational (tr)-type GTP-binding domainPROSITEPS51722G_TR_2coord: 103..266
score: 42.081429
IPR004160Translation elongation factor EFTu/EF1A, C-terminalPFAMPF03143GTP_EFTU_D3coord: 349..446
e-value: 3.7E-39
score: 133.3
IPR031157Tr-type G domain, conserved sitePROSITEPS00301G_TR_1coord: 103..118
IPR033720Elongation factor Tu, domain 2CDDcd03697EFTU_IIcoord: 273..339
e-value: 3.44513E-37
score: 129.176
IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalSUPERFAMILY50465EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domaincoord: 348..447
IPR009000Translation protein, beta-barrel domain superfamilySUPERFAMILY50447Translation proteinscoord: 267..341

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
PI0009499PI0009499gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0009499.1-exonPI0009499.1-exon-chr02:24624561..24624839exon
PI0009499.1-exonPI0009499.1-exon-chr02:24624890..24625638exon
PI0009499.1-exonPI0009499.1-exon-chr02:24625676..24625994exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0009499.1-cdsPI0009499.1-cds-chr02:24624561..24624839CDS
PI0009499.1-cdsPI0009499.1-cds-chr02:24624890..24625638CDS
PI0009499.1-cdsPI0009499.1-cds-chr02:24625676..24625994CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
PI0009499.1PI0009499.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006414 translational elongation
biological_process GO:0070125 mitochondrial translational elongation
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003746 translation elongation factor activity