PI0008358.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0008358.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr11: 14709014 .. 14709220 (-)
Sequence length	207
RNA-Seq Expression	PI0008358.1
Synteny	PI0008358.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAATGTAACAGTCGAGGCCACCATGGCGGAGATGGAGACGAAAATTAATCTCTTGATGAAAGCTGTTGAGGAACGAAACCATGAAATTGCAACTTTGAGAGAGCAAATGCAAACTCGTGAAGCTATTGAGTCGAGTCAAACTCTTGTTGTCAAAGCTAGTGACAAAGGGAAGAATGTGGTGCAAGAAAATCAACCACAATAA

mRNA sequence

ATGACTAATGTAACAGTCGAGGCCACCATGGCGGAGATGGAGACGAAAATTAATCTCTTGATGAAAGCTGTTGAGGAACGAAACCATGAAATTGCAACTTTGAGAGAGCAAATGCAAACTCGTGAAGCTATTGAGTCGAGTCAAACTCTTGTTGTCAAAGCTAGTGACAAAGGGAAGAATGTGGTGCAAGAAAATCAACCACAATAA

Coding sequence (CDS)

ATGACTAATGTAACAGTCGAGGCCACCATGGCGGAGATGGAGACGAAAATTAATCTCTTGATGAAAGCTGTTGAGGAACGAAACCATGAAATTGCAACTTTGAGAGAGCAAATGCAAACTCGTGAAGCTATTGAGTCGAGTCAAACTCTTGTTGTCAAAGCTAGTGACAAAGGGAAGAATGTGGTGCAAGAAAATCAACCACAATAA

Protein sequence

MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKNVVQENQPQ

Homology

[Close]

BLAST of PI0008358.1 vs. ExPASy TrEMBL
Match: A0A5A7VCU1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00120 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.8e-18
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1   MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKN 60
           MT++T EA MAEME KIN LMK VEER+HEI  LREQMQTRE +ESSQT VVKA+DKGKN
Sbjct: 114 MTDITAEAVMAEMERKINFLMKVVEERDHEITALREQMQTRETVESSQTSVVKATDKGKN 173

Query: 61  VVQENQPQ 69
           VVQENQPQ
Sbjct: 174 VVQENQPQ 181

[Close]

BLAST of PI0008358.1 vs. ExPASy TrEMBL
Match: A0A5A7UF60 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00260 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-17
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1   MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKN 60
           M ++TVEA MAEME KIN LMKAVEER+HEI  LREQM+TRE  ESSQT VVKA+DKGKN
Sbjct: 86  MADITVEAAMAEMEKKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKATDKGKN 145

Query: 61  VVQENQPQ 69
           VVQENQPQ
Sbjct: 146 VVQENQPQ 153

[Close]

BLAST of PI0008358.1 vs. ExPASy TrEMBL
Match: A0A5A7V6H5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00040 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.4e-17
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1   MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKN 60
           M N+T EA MAEME K+N LMK VEER+HEI TLREQMQTRE  ESSQT VVKA+DKGKN
Sbjct: 39  MANITAEAVMAEMERKVNFLMKVVEERDHEITTLREQMQTRETAESSQTPVVKATDKGKN 98

Query: 61  VVQENQPQ 69
            VQ+NQPQ
Sbjct: 99  AVQDNQPQ 106

[Close]

BLAST of PI0008358.1 vs. ExPASy TrEMBL
Match: A0A5A7UBC8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G00170 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.4e-17
Identity = 52/68 (76.47%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1   MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKN 60
           M ++TVEA MA+ME KIN LMK VEER+HEI TLREQM TRE +ESSQT +VKA+DKGKN
Sbjct: 39  MVDITVEAAMAKMERKINFLMKVVEERDHEITTLREQMHTREIVESSQTPIVKATDKGKN 98

Query: 61  VVQENQPQ 69
           VVQENQPQ
Sbjct: 99  VVQENQPQ 106

[Close]

BLAST of PI0008358.1 vs. ExPASy TrEMBL
Match: A0A5A7UG56 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00780 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.1e-17
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1   MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKN 60
           M ++T EA M EME KIN LMKAVEER+HEI  LREQM+TRE IESSQT VVKA+DKGKN
Sbjct: 166 MADITAEAAMVEMERKINFLMKAVEERDHEITALREQMRTRETIESSQTPVVKATDKGKN 225

Query: 61  VVQENQPQ 69
           VVQENQPQ
Sbjct: 226 VVQENQPQ 233

[Close]

BLAST of PI0008358.1 vs. NCBI nr
Match: KAA0065983.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28928.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 5.8e-18
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1   MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKN 60
           MT++T EA MAEME KIN LMK VEER+HEI  LREQMQTRE +ESSQT VVKA+DKGKN
Sbjct: 114 MTDITAEAVMAEMERKINFLMKVVEERDHEITALREQMQTRETVESSQTSVVKATDKGKN 173

Query: 61  VVQENQPQ 69
           VVQENQPQ
Sbjct: 174 VVQENQPQ 181

[Close]

BLAST of PI0008358.1 vs. NCBI nr
Match: KAA0054593.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27557.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 2.9e-17
Identity = 54/68 (79.41%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1   MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKN 60
           M ++TVEA MAEME KIN LMKAVEER+HEI  LREQM+TRE  ESSQT VVKA+DKGKN
Sbjct: 86  MADITVEAAMAEMEKKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKATDKGKN 145

Query: 61  VVQENQPQ 69
           VVQENQPQ
Sbjct: 146 VVQENQPQ 153

[Close]

BLAST of PI0008358.1 vs. NCBI nr
Match: KAA0061331.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK14685.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 4.9e-17
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1   MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKN 60
           M N+T EA MAEME K+N LMK VEER+HEI TLREQMQTRE  ESSQT VVKA+DKGKN
Sbjct: 39  MANITAEAVMAEMERKVNFLMKVVEERDHEITTLREQMQTRETAESSQTPVVKATDKGKN 98

Query: 61  VVQENQPQ 69
            VQ+NQPQ
Sbjct: 99  AVQDNQPQ 106

[Close]

BLAST of PI0008358.1 vs. NCBI nr
Match: KAA0051496.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 4.9e-17
Identity = 52/68 (76.47%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1   MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKN 60
           M ++TVEA MA+ME KIN LMK VEER+HEI TLREQM TRE +ESSQT +VKA+DKGKN
Sbjct: 39  MVDITVEAAMAKMERKINFLMKVVEERDHEITTLREQMHTREIVESSQTPIVKATDKGKN 98

Query: 61  VVQENQPQ 69
           VVQENQPQ
Sbjct: 99  VVQENQPQ 106

[Close]

BLAST of PI0008358.1 vs. NCBI nr
Match: KAA0054154.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 6.4e-17
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1   MTNVTVEATMAEMETKINLLMKAVEERNHEIATLREQMQTREAIESSQTLVVKASDKGKN 60
           M ++T EA M EME KIN LMKAVEER+HEI  LREQM+TRE IESSQT VVKA+DKGKN
Sbjct: 166 MADITAEAAMVEMERKINFLMKAVEERDHEITALREQMRTRETIESSQTPVVKATDKGKN 225

Query: 61  VVQENQPQ 69
           VVQENQPQ
Sbjct: 226 VVQENQPQ 233

The following BLAST results are available for this feature:

BLAST of PI0008358.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008358.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VCU1	2.8e-18	79.41	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UF60	1.4e-17	79.41	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V6H5	2.4e-17	76.47	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UBC8	2.4e-17	76.47	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7UG56	3.1e-17	77.94	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of PI0008358.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065983.1	5.8e-18	79.41	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28928.1 ty3-gyp...	[more]
KAA0054593.1	2.9e-17	79.41	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27557.1 ty3-gyp...	[more]
KAA0061331.1	4.9e-17	76.47	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK14685.1 ty3-gyp...	[more]
KAA0051496.1	4.9e-17	76.47	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0054154.1	6.4e-17	77.94	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0008358.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 10..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..68

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0008358	PI0008358	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0008358.1-exon	PI0008358.1-exon-chr11:14709014..14709220	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0008358.1-cds	PI0008358.1-cds-chr11:14709014..14709220	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0008358.1	PI0008358.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity