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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGTGTCATGACGATGGTGATGGAGTTCCGGTAAAGAGGGCAACTAGAATGGGACTGAAACCACATATTAATACAATCATTGTGGAAGTAAATCATGAATTAGCTTTGCCTTTTCATCTTCAAGAAGCTTGGAGTATAAGAAGAAGTAGTAAGTAGAGGACATTGATAATCCAACCCTTTTTCAGAGTTATGATATTGTATGATGGAGAACTCAAACATGTGGCAATCAGAGCAAGTAGAGGACAAGTTGTGTATGTTCACCATGTCCAAAGCCAACAACAATGTATCTTTCACAATTGGGTATCAATCAACTTTCGACTCAAAGGATGTCGCCTTAAGCATAATTTTCATTCAATCACGTGA mRNA sequence ATGTGTCATGACGATGGTGATGGAGTTCCGGTAAAGAGGGCAACTAGAATGGGACTGAAACCACATATTAATACAATCATTGTGGAAGTAAATCATGAATTAGCTTTGCCTTTTCATCTTCAAGAAGCTTGGAGTATAAGAAGAAGTATTATGATATTGTATGATGGAGAACTCAAACATGTGGCAATCAGAGCAAGTAGAGGACAAGTTGTGTATGTTCACCATGTCCAAAGCCAACAACAATGTATCTTTCACAATTGGGTATCAATCAACTTTCGACTCAAAGGATGTCGCCTTAAGCATAATTTTCATTCAATCACGTGA Coding sequence (CDS) ATGTGTCATGACGATGGTGATGGAGTTCCGGTAAAGAGGGCAACTAGAATGGGACTGAAACCACATATTAATACAATCATTGTGGAAGTAAATCATGAATTAGCTTTGCCTTTTCATCTTCAAGAAGCTTGGAGTATAAGAAGAAGTATTATGATATTGTATGATGGAGAACTCAAACATGTGGCAATCAGAGCAAGTAGAGGACAAGTTGTGTATGTTCACCATGTCCAAAGCCAACAACAATGTATCTTTCACAATTGGGTATCAATCAACTTTCGACTCAAAGGATGTCGCCTTAAGCATAATTTTCATTCAATCACGTGA Protein sequence MCHDDGDGVPVKRATRMGLKPHINTIIVEVNHELALPFHLQEAWSIRRSIMILYDGELKHVAIRASRGQVVYVHHVQSQQQCIFHNWVSINFRLKGCRLKHNFHSIT
Homology
BLAST of PI0006520.1 vs. ExPASy TrEMBL
Match: A0A0A0LCP8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346930 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16 Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 0
Query: 5 DGDGVPVKRATRMGLKPHINTIIVEVNHELALPFHLQEAWSIRRSIMILYDGELKHVAIR 64
DGDGV VKRAT MGLKPH +TI+ EVNHEL+LP HLQ+ S+ M+LYDGEL+HV +
Sbjct: 7 DGDGVRVKRATGMGLKPHTHTILTEVNHELSLPLHLQQT-SLEYKNMVLYDGELEHVGSK 66
Query: 65 ASRGQVVYVHHV 77
RGQV Y+ HV
Sbjct: 67 VIRGQVAYLFHV 77
BLAST of PI0006520.1 vs. NCBI nr
Match: KAE8653005.1 (hypothetical protein Csa_004558 [Cucumis sativus]) HSP 1 Score: 95.9 bits (237), Expect = 2.2e-16 Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 0
Query: 5 DGDGVPVKRATRMGLKPHINTIIVEVNHELALPFHLQEAWSIRRSIMILYDGELKHVAIR 64
DGDGV VKRAT MGLKPH +TI+ EVNHEL+LP HLQ+ S+ M+LYDGEL+HV +
Sbjct: 7 DGDGVRVKRATGMGLKPHTHTILTEVNHELSLPLHLQQT-SLEYKNMVLYDGELEHVGSK 66
Query: 65 ASRGQVVYVHHV 77
RGQV Y+ HV
Sbjct: 67 VIRGQVAYLFHV 77
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LCP8 | 1.1e-16 | 63.89 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346930 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAE8653005.1 | 2.2e-16 | 63.89 | hypothetical protein Csa_004558 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| PI0006520 | PI0006520 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0006520.1-exon | PI0006520.1-exon-chr06:13276637..13276812 | exon |
| PI0006520.1-exon | PI0006520.1-exon-chr06:13276852..13276999 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0006520.1-cds | PI0006520.1-cds-chr06:13276637..13276812 | CDS |
| PI0006520.1-cds | PI0006520.1-cds-chr06:13276852..13276999 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0006520.1 | PI0006520.1-protein | polypeptide |
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