PI0006520 (gene) Melon (PI 482460) v1

Overview
NamePI0006520
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr06: 13276637 .. 13276999 (-)
RNA-Seq ExpressionPI0006520
SyntenyPI0006520
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCATGACGATGGTGATGGAGTTCCGGTAAAGAGGGCAACTAGAATGGGACTGAAACCACATATTAATACAATCATTGTGGAAGTAAATCATGAATTAGCTTTGCCTTTTCATCTTCAAGAAGCTTGGAGTATAAGAAGAAGTAGTAAGTAGAGGACATTGATAATCCAACCCTTTTTCAGAGTTATGATATTGTATGATGGAGAACTCAAACATGTGGCAATCAGAGCAAGTAGAGGACAAGTTGTGTATGTTCACCATGTCCAAAGCCAACAACAATGTATCTTTCACAATTGGGTATCAATCAACTTTCGACTCAAAGGATGTCGCCTTAAGCATAATTTTCATTCAATCACGTGA

mRNA sequence

ATGTGTCATGACGATGGTGATGGAGTTCCGGTAAAGAGGGCAACTAGAATGGGACTGAAACCACATATTAATACAATCATTGTGGAAGTAAATCATGAATTAGCTTTGCCTTTTCATCTTCAAGAAGCTTGGAGTATAAGAAGAAGTATTATGATATTGTATGATGGAGAACTCAAACATGTGGCAATCAGAGCAAGTAGAGGACAAGTTGTGTATGTTCACCATGTCCAAAGCCAACAACAATGTATCTTTCACAATTGGGTATCAATCAACTTTCGACTCAAAGGATGTCGCCTTAAGCATAATTTTCATTCAATCACGTGA

Coding sequence (CDS)

ATGTGTCATGACGATGGTGATGGAGTTCCGGTAAAGAGGGCAACTAGAATGGGACTGAAACCACATATTAATACAATCATTGTGGAAGTAAATCATGAATTAGCTTTGCCTTTTCATCTTCAAGAAGCTTGGAGTATAAGAAGAAGTATTATGATATTGTATGATGGAGAACTCAAACATGTGGCAATCAGAGCAAGTAGAGGACAAGTTGTGTATGTTCACCATGTCCAAAGCCAACAACAATGTATCTTTCACAATTGGGTATCAATCAACTTTCGACTCAAAGGATGTCGCCTTAAGCATAATTTTCATTCAATCACGTGA

Protein sequence

MCHDDGDGVPVKRATRMGLKPHINTIIVEVNHELALPFHLQEAWSIRRSIMILYDGELKHVAIRASRGQVVYVHHVQSQQQCIFHNWVSINFRLKGCRLKHNFHSIT
Homology
[Close]
BLAST of PI0006520 vs. ExPASy TrEMBL
Match: A0A0A0LCP8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346930 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16
Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 0 

Query: 5  DGDGVPVKRATRMGLKPHINTIIVEVNHELALPFHLQEAWSIRRSIMILYDGELKHVAIR 64
          DGDGV VKRAT MGLKPH +TI+ EVNHEL+LP HLQ+  S+    M+LYDGEL+HV  +
Sbjct: 7  DGDGVRVKRATGMGLKPHTHTILTEVNHELSLPLHLQQT-SLEYKNMVLYDGELEHVGSK 66

Query: 65 ASRGQVVYVHHV 77
            RGQV Y+ HV
Sbjct: 67 VIRGQVAYLFHV 77

[Close]
BLAST of PI0006520 vs. NCBI nr
Match: KAE8653005.1 (hypothetical protein Csa_004558 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 2.2e-16
Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 0 

Query: 5  DGDGVPVKRATRMGLKPHINTIIVEVNHELALPFHLQEAWSIRRSIMILYDGELKHVAIR 64
          DGDGV VKRAT MGLKPH +TI+ EVNHEL+LP HLQ+  S+    M+LYDGEL+HV  +
Sbjct: 7  DGDGVRVKRATGMGLKPHTHTILTEVNHELSLPLHLQQT-SLEYKNMVLYDGELEHVGSK 66

Query: 65 ASRGQVVYVHHV 77
            RGQV Y+ HV
Sbjct: 67 VIRGQVAYLFHV 77

The following BLAST results are available for this feature:
BLAST of PI0006520 vs.
Match NameE-valueIdentityDescription
BLAST of PI0006520 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCP81.1e-1663.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346930 PE=4 SV=1[more]
BLAST of PI0006520 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8653005.12.2e-1663.89hypothetical protein Csa_004558 [Cucumis sativus][more]
BLAST of PI0006520 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0006520.1PI0006520.1mRNA