Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTACATTGCTTACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCATAACCTTAGATGGGGAAATGATGCCCAACGACCCGCACAAGCAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTAGTAAAAGCTCTTGCTACCAACACAATTTCCTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTAACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGGTCAACCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATCCTGCAAACCCCTCCAAGCGAAGAAAAGGTACCATCTAACCCTATCCTTCTAGTAGATGAAAATAAGAAAAAAGAAGAAAATCTAGAAAACAATGTCTCTTCTTCTTCTTCAAAAGGTAAAACTAGAATTTTTTATTTTTCCCCTTTTGTTCCTAACGCTCCTTTTCCTTCCAGATTGGCCCCTGA
mRNA sequence
ATGACTACATTGCTTACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCATAACCTTAGATGGGGAAATGATGCCCAACGACCCGCACAAGCAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTAGTAAAAGCTCTTGCTACCAACACAATTTCCTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTAACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGGTCAACCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATCCTGCAAACCCCTCCAAGCGAAGAAAAGATTGGCCCCTGA
Coding sequence (CDS)
ATGACTACATTGCTTACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCATAACCTTAGATGGGGAAATGATGCCCAACGACCCGCACAAGCAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTAGTAAAAGCTCTTGCTACCAACACAATTTCCTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTAACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGGTCAACCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATCCTGCAAACCCCTCCAAGCGAAGAAAAGATTGGCCCCTGA
Protein sequence
MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEKIGP
Homology
BLAST of PI0006346.1 vs. ExPASy TrEMBL
Match:
A0A5D3CFE7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00840 PE=4 SV=1)
HSP 1 Score: 243.4 bits (620), Expect = 6.1e-61
Identity = 113/151 (74.83%), Postives = 132/151 (87.42%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
MTTLLTSFVQG KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD
Sbjct: 186 MTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKP 245
Query: 61 NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGND Q QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 246 NLRWGNDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDGK 305
Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
GKLP QPDHANVSAISLRSGKIL TP ++EK
Sbjct: 306 GKLPAQPDHANVSAISLRSGKILDTPTTKEK 336
BLAST of PI0006346.1 vs. ExPASy TrEMBL
Match:
A0A5D3CB46 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00170 PE=4 SV=1)
HSP 1 Score: 242.7 bits (618), Expect = 1.0e-60
Identity = 113/151 (74.83%), Postives = 134/151 (88.74%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
MTTLLTSFVQG KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN
Sbjct: 106 MTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNL 165
Query: 61 NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGND Q+ QA S+S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT AISK++GK
Sbjct: 166 NLRWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKMDGK 225
Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
GKLP QPDHANVSAISLRSGKIL TP ++EK
Sbjct: 226 GKLPAQPDHANVSAISLRSGKILDTPTTKEK 256
BLAST of PI0006346.1 vs. ExPASy TrEMBL
Match:
E5GBZ4 (Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 241.1 bits (614), Expect = 3.0e-60
Identity = 112/151 (74.17%), Postives = 135/151 (89.40%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
MTTLLTSFVQG +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDN
Sbjct: 57 MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116
Query: 61 NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGND Q+ QA +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176
Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
GKLP QPD+ANVSAISLRSGKIL TP ++EK
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEK 207
BLAST of PI0006346.1 vs. ExPASy TrEMBL
Match:
A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)
HSP 1 Score: 240.0 bits (611), Expect = 6.7e-60
Identity = 111/151 (73.51%), Postives = 135/151 (89.40%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
MTTLLTSFVQG +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDN
Sbjct: 142 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNP 201
Query: 61 NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGND Q+ QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 202 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 261
Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
GKL Q ++ANVSA+SLRSGKIL TP ++EK
Sbjct: 262 GKLSAQSNYANVSAVSLRSGKILDTPTTKEK 292
BLAST of PI0006346.1 vs. ExPASy TrEMBL
Match:
A0A1S3CQU8 (uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=4 SV=1)
HSP 1 Score: 238.8 bits (608), Expect = 1.5e-59
Identity = 110/151 (72.85%), Postives = 132/151 (87.42%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
MTTLLTSFVQG +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDN
Sbjct: 56 MTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNP 115
Query: 61 NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGND Q+ QA +S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT ISK++GK
Sbjct: 116 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGK 175
Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
GKLP QPDH NVSAISLRSGKIL TP ++EK
Sbjct: 176 GKLPAQPDHVNVSAISLRSGKILDTPTTKEK 206
BLAST of PI0006346.1 vs. NCBI nr
Match:
TYK10613.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 243.4 bits (620), Expect = 1.3e-60
Identity = 113/151 (74.83%), Postives = 132/151 (87.42%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
MTTLLTSFVQG KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD
Sbjct: 186 MTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKP 245
Query: 61 NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGND Q QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 246 NLRWGNDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDGK 305
Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
GKLP QPDHANVSAISLRSGKIL TP ++EK
Sbjct: 306 GKLPAQPDHANVSAISLRSGKILDTPTTKEK 336
BLAST of PI0006346.1 vs. NCBI nr
Match:
TYK07549.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 242.7 bits (618), Expect = 2.1e-60
Identity = 113/151 (74.83%), Postives = 134/151 (88.74%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
MTTLLTSFVQG KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN
Sbjct: 106 MTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNL 165
Query: 61 NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGND Q+ QA S+S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT AISK++GK
Sbjct: 166 NLRWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKMDGK 225
Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
GKLP QPDHANVSAISLRSGKIL TP ++EK
Sbjct: 226 GKLPAQPDHANVSAISLRSGKILDTPTTKEK 256
BLAST of PI0006346.1 vs. NCBI nr
Match:
ADN33993.1 (retrotransposon gag protein [Cucumis melo subsp. melo])
HSP 1 Score: 241.1 bits (614), Expect = 6.2e-60
Identity = 112/151 (74.17%), Postives = 135/151 (89.40%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
MTTLLTSFVQG +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDN
Sbjct: 57 MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116
Query: 61 NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGND Q+ QA +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176
Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
GKLP QPD+ANVSAISLRSGKIL TP ++EK
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEK 207
BLAST of PI0006346.1 vs. NCBI nr
Match:
KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 240.0 bits (611), Expect = 1.4e-59
Identity = 111/151 (73.51%), Postives = 135/151 (89.40%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
MTTLLTSFVQG +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDN
Sbjct: 142 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNP 201
Query: 61 NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGND Q+ QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 202 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 261
Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
GKL Q ++ANVSA+SLRSGKIL TP ++EK
Sbjct: 262 GKLSAQSNYANVSAVSLRSGKILDTPTTKEK 292
BLAST of PI0006346.1 vs. NCBI nr
Match:
XP_008465649.1 (PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo])
HSP 1 Score: 238.8 bits (608), Expect = 3.1e-59
Identity = 110/151 (72.85%), Postives = 132/151 (87.42%), Query Frame = 0
Query: 1 MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
MTTLLTSFVQG +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDN
Sbjct: 56 MTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNP 115
Query: 61 NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
NLRWGND Q+ QA +S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT ISK++GK
Sbjct: 116 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGK 175
Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
GKLP QPDH NVSAISLRSGKIL TP ++EK
Sbjct: 176 GKLPAQPDHVNVSAISLRSGKILDTPTTKEK 206
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3CFE7 | 6.1e-61 | 74.83 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A5D3CB46 | 1.0e-60 | 74.83 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| E5GBZ4 | 3.0e-60 | 74.17 | Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
| A0A5D3CRR8 | 6.7e-60 | 73.51 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A1S3CQU8 | 1.5e-59 | 72.85 | uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK10613.1 | 1.3e-60 | 74.83 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| TYK07549.1 | 2.1e-60 | 74.83 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| ADN33993.1 | 6.2e-60 | 74.17 | retrotransposon gag protein [Cucumis melo subsp. melo] | [more] |
| KAA0047407.1 | 1.4e-59 | 73.51 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos... | [more] |
| XP_008465649.1 | 3.1e-59 | 72.85 | PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
