PI0006346 (gene) Melon (PI 482460) v1

Overview


Name	PI0006346
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr06: 15167733 .. 15168343 (+)
RNA-Seq Expression	PI0006346
Synteny	PI0006346

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTACATTGCTTACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCATAACCTTAGATGGGGAAATGATGCCCAACGACCCGCACAAGCAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTAGTAAAAGCTCTTGCTACCAACACAATTTCCTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTAACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGGTCAACCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATCCTGCAAACCCCTCCAAGCGAAGAAAAGGTACCATCTAACCCTATCCTTCTAGTAGATGAAAATAAGAAAAAAGAAGAAAATCTAGAAAACAATGTCTCTTCTTCTTCTTCAAAAGGTAAAACTAGAATTTTTTATTTTTCCCCTTTTGTTCCTAACGCTCCTTTTCCTTCCAGATTGGCCCCTGA

mRNA sequence

ATGACTACATTGCTTACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCATAACCTTAGATGGGGAAATGATGCCCAACGACCCGCACAAGCAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTAGTAAAAGCTCTTGCTACCAACACAATTTCCTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTAACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGGTCAACCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATCCTGCAAACCCCTCCAAGCGAAGAAAAGATTGGCCCCTGA

Coding sequence (CDS)

ATGACTACATTGCTTACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCATAACCTTAGATGGGGAAATGATGCCCAACGACCCGCACAAGCAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTAGTAAAAGCTCTTGCTACCAACACAATTTCCTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTAACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGGTCAACCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATCCTGCAAACCCCTCCAAGCGAAGAAAAGATTGGCCCCTGA

Protein sequence

MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNHNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGKLPGQPDHANVSAISLRSGKILQTPPSEEKIGP

Homology

[Close]

BLAST of PI0006346 vs. ExPASy TrEMBL
Match: A0A5D3CFE7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00840 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 6.1e-61
Identity = 113/151 (74.83%), Postives = 132/151 (87.42%), Query Frame = 0


Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
           MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD  
Sbjct: 186 MTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKP 245

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
           NLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 246 NLRWGNDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDGK 305

Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
           GKLP QPDHANVSAISLRSGKIL TP ++EK
Sbjct: 306 GKLPAQPDHANVSAISLRSGKILDTPTTKEK 336

[Close]

BLAST of PI0006346 vs. ExPASy TrEMBL
Match: A0A5D3CB46 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00170 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.0e-60
Identity = 113/151 (74.83%), Postives = 134/151 (88.74%), Query Frame = 0


Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
           MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN 
Sbjct: 106 MTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNL 165

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
           NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT AISK++GK
Sbjct: 166 NLRWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKMDGK 225

Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
           GKLP QPDHANVSAISLRSGKIL TP ++EK
Sbjct: 226 GKLPAQPDHANVSAISLRSGKILDTPTTKEK 256

[Close]

BLAST of PI0006346 vs. ExPASy TrEMBL
Match: E5GBZ4 (Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.0e-60
Identity = 112/151 (74.17%), Postives = 135/151 (89.40%), Query Frame = 0


Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
           MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDN 
Sbjct: 57  MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
           NLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176

Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
           GKLP QPD+ANVSAISLRSGKIL TP ++EK
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEK 207

[Close]

BLAST of PI0006346 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 6.7e-60
Identity = 111/151 (73.51%), Postives = 135/151 (89.40%), Query Frame = 0


Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
           MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDN 
Sbjct: 142 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNP 201

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
           NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 202 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 261

Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
           GKL  Q ++ANVSA+SLRSGKIL TP ++EK
Sbjct: 262 GKLSAQSNYANVSAVSLRSGKILDTPTTKEK 292

[Close]

BLAST of PI0006346 vs. ExPASy TrEMBL
Match: A0A1S3CQU8 (uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.5e-59
Identity = 110/151 (72.85%), Postives = 132/151 (87.42%), Query Frame = 0


Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
           MTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDN 
Sbjct: 56  MTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNP 115

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
           NLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT  ISK++GK
Sbjct: 116 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGK 175

Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
           GKLP QPDH NVSAISLRSGKIL TP ++EK
Sbjct: 176 GKLPAQPDHVNVSAISLRSGKILDTPTTKEK 206

[Close]

BLAST of PI0006346 vs. NCBI nr
Match: TYK10613.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 243.4 bits (620), Expect = 1.3e-60
Identity = 113/151 (74.83%), Postives = 132/151 (87.42%), Query Frame = 0


Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
           MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD  
Sbjct: 186 MTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWRDKP 245

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
           NLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 246 NLRWGNDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKMDGK 305

Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
           GKLP QPDHANVSAISLRSGKIL TP ++EK
Sbjct: 306 GKLPAQPDHANVSAISLRSGKILDTPTTKEK 336

[Close]

BLAST of PI0006346 vs. NCBI nr
Match: TYK07549.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 242.7 bits (618), Expect = 2.1e-60
Identity = 113/151 (74.83%), Postives = 134/151 (88.74%), Query Frame = 0


Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
           MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN 
Sbjct: 106 MTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNL 165

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
           NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT AISK++GK
Sbjct: 166 NLRWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKMDGK 225

Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
           GKLP QPDHANVSAISLRSGKIL TP ++EK
Sbjct: 226 GKLPAQPDHANVSAISLRSGKILDTPTTKEK 256

[Close]

BLAST of PI0006346 vs. NCBI nr
Match: ADN33993.1 (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 241.1 bits (614), Expect = 6.2e-60
Identity = 112/151 (74.17%), Postives = 135/151 (89.40%), Query Frame = 0


Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
           MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDN 
Sbjct: 57  MTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNP 116

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
           NLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 117 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 176

Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
           GKLP QPD+ANVSAISLRSGKIL TP ++EK
Sbjct: 177 GKLPAQPDYANVSAISLRSGKILDTPTTKEK 207

[Close]

BLAST of PI0006346 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 240.0 bits (611), Expect = 1.4e-59
Identity = 111/151 (73.51%), Postives = 135/151 (89.40%), Query Frame = 0


Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
           MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDN 
Sbjct: 142 MTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNP 201

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
           NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ EMKQQM+QLT AISK++GK
Sbjct: 202 NLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGK 261

Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
           GKL  Q ++ANVSA+SLRSGKIL TP ++EK
Sbjct: 262 GKLSAQSNYANVSAVSLRSGKILDTPTTKEK 292

[Close]

BLAST of PI0006346 vs. NCBI nr
Match: XP_008465649.1 (PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo])

HSP 1 Score: 238.8 bits (608), Expect = 3.1e-59
Identity = 110/151 (72.85%), Postives = 132/151 (87.42%), Query Frame = 0


Query: 1   MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNH 60
           MTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDN 
Sbjct: 56  MTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWRDNP 115

Query: 61  NLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGK 120
           NLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ +MKQQM+QLT  ISK++GK
Sbjct: 116 NLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKMDGK 175

Query: 121 GKLPGQPDHANVSAISLRSGKILQTPPSEEK 152
           GKLP QPDH NVSAISLRSGKIL TP ++EK
Sbjct: 176 GKLPAQPDHVNVSAISLRSGKILDTPTTKEK 206

The following BLAST results are available for this feature:

BLAST of PI0006346 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006346 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFE7	6.1e-61	74.83	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CB46	1.0e-60	74.83	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
E5GBZ4	3.0e-60	74.17	Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5D3CRR8	6.7e-60	73.51	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3CQU8	1.5e-59	72.85	uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=...	[more]

BLAST of PI0006346 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK10613.1	1.3e-60	74.83	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK07549.1	2.1e-60	74.83	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
ADN33993.1	6.2e-60	74.17	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]
KAA0047407.1	1.4e-59	73.51	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos...	[more]
XP_008465649.1	3.1e-59	72.85	PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]	[more]

BLAST of PI0006346 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006346.1	PI0006346.1	mRNA