PI0006266.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0006266.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Lectin receptor kinase
Location	chr09: 13958914 .. 13959285 (+)
Sequence length	372
RNA-Seq Expression	PI0006266.1
Synteny	PI0006266.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCGTTTCAAGCATATGAAGAAAAGAAAAAGAAGAAGAAAGGAATCAATGATCAATTGCTCAAGTCGCGAGTTGATTTGAGACCAATGGAGGAGTTAATCCCAATAATAGTAGTGAACAAAGACGAGAAGGATGAGGAAGAGGAAAAGGACAAGGACAAGGACTTGATTGGATACCCAATGAAGACAACAACAATAACTTCCAAAGAGGATCAAGAAACTCAACATAAGGTCGTGGACAAGGCAACTCAAGATCAAGGTATGATAAATCAAACATTAAATGCTATAATTGTCAAAAGTTTGGTCATTATGCATTCGAACGTAGAGCTCCTAGAAATAATAGAGTTGAAAGAAAACAAACTACATTGA

mRNA sequence

ATGGGTTCGTTTCAAGCATATGAAGAAAAGAAAAAGAAGAAGAAAGGAATCAATGATCAATTGCTCAAGTCGCGAGTTGATTTGAGACCAATGGAGGAGTTAATCCCAATAATAGTAGTGAACAAAGACGAGAAGGATGAGGAAGAGGAAAAGGACAAGGACAAGGACTTGATTGGATACCCAATGAAGACAACAACAATAACTTCCAAAGAGGATCAAGAAACTCAACATAAGGTCGTGGACAAGGCAACTCAAGATCAAGGTATGATAAATCAAACATTAAATGCTATAATTGTCAAAAGTTTGGTCATTATGCATTCGAACGTAGAGCTCCTAGAAATAATAGAGTTGAAAGAAAACAAACTACATTGA

Coding sequence (CDS)

ATGGGTTCGTTTCAAGCATATGAAGAAAAGAAAAAGAAGAAGAAAGGAATCAATGATCAATTGCTCAAGTCGCGAGTTGATTTGAGACCAATGGAGGAGTTAATCCCAATAATAGTAGTGAACAAAGACGAGAAGGATGAGGAAGAGGAAAAGGACAAGGACAAGGACTTGATTGGATACCCAATGAAGACAACAACAATAACTTCCAAAGAGGATCAAGAAACTCAACATAAGGTCGTGGACAAGGCAACTCAAGATCAAGGTATGATAAATCAAACATTAAATGCTATAATTGTCAAAAGTTTGGTCATTATGCATTCGAACGTAGAGCTCCTAGAAATAATAGAGTTGAAAGAAAACAAACTACATTGA

Protein sequence

MGSFQAYEEKKKKKKGINDQLLKSRVDLRPMEELIPIIVVNKDEKDEEEEKDKDKDLIGYPMKTTTITSKEDQETQHKVVDKATQDQGMINQTLNAIIVKSLVIMHSNVELLEIIELKENKLH

Homology

[Close]

BLAST of PI0006266.1 vs. ExPASy TrEMBL
Match: A0A5D3DZJ9 (Lectin receptor kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2406G00040 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.4e-07
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 31 MEELIPIIVVNKDEKDEE-EEKDKDKDLIGYPMKTTTITSKEDQETQHKVVDKATQDQ 88
          +EEL+PII  NKD      E++++DKD++G  MKTTTIT+KED ETQ KVVDKATQDQ
Sbjct: 17 VEELVPIIKANKDGNVVNIEDEEEDKDVLGGSMKTTTITAKEDGETQKKVVDKATQDQ 74

[Close]

BLAST of PI0006266.1 vs. ExPASy TrEMBL
Match: A0A6D2KBA3 (DUF4219 domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS32667 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-05
Identity = 51/123 (41.46%), Postives = 73/123 (59.35%), Query Frame = 0


Query: 1   MGSFQAYEEKKKKKK-GINDQLLKSR-VDLRPMEELIPIIVVNKDEKDEEEEKDKDKDLI 60
           +GS QAYEEKKKKKK  I ++   SR V +   ++++  I      K E+E +D + D +
Sbjct: 162 LGSLQAYEEKKKKKKEDIAEKTKYSRCVSIMIKKKVVETIQDKAGVKHEDEVEDMETDEV 221

Query: 61  GYPMKTTTITSKEDQETQH-KVVDKATQDQGMINQTLNAIIVKSLVIMHSNVELLEIIEL 120
           G  MK    T+   +ET H + +++  Q+QG I+Q  NA IV+SL IM  NVEL   IEL
Sbjct: 222 GDQMK----TAPTKEETIHQEAMEEEVQNQGTISQASNATIVESLDIMLPNVELQTTIEL 280

[Close]

BLAST of PI0006266.1 vs. NCBI nr
Match: KAA0040440.1 (lectin receptor kinase [Cucumis melo var. makuwa] >TYK28888.1 lectin receptor kinase [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 4.9e-07
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 31 MEELIPIIVVNKDEKDEE-EEKDKDKDLIGYPMKTTTITSKEDQETQHKVVDKATQDQ 88
          +EEL+PII  NKD      E++++DKD++G  MKTTTIT+KED ETQ KVVDKATQDQ
Sbjct: 17 VEELVPIIKANKDGNVVNIEDEEEDKDVLGGSMKTTTITAKEDGETQKKVVDKATQDQ 74

[Close]

BLAST of PI0006266.1 vs. NCBI nr
Match: CAA7045432.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-05
Identity = 51/123 (41.46%), Postives = 73/123 (59.35%), Query Frame = 0


Query: 1   MGSFQAYEEKKKKKK-GINDQLLKSR-VDLRPMEELIPIIVVNKDEKDEEEEKDKDKDLI 60
           +GS QAYEEKKKKKK  I ++   SR V +   ++++  I      K E+E +D + D +
Sbjct: 162 LGSLQAYEEKKKKKKEDIAEKTKYSRCVSIMIKKKVVETIQDKAGVKHEDEVEDMETDEV 221

Query: 61  GYPMKTTTITSKEDQETQH-KVVDKATQDQGMINQTLNAIIVKSLVIMHSNVELLEIIEL 120
           G  MK    T+   +ET H + +++  Q+QG I+Q  NA IV+SL IM  NVEL   IEL
Sbjct: 222 GDQMK----TAPTKEETIHQEAMEEEVQNQGTISQASNATIVESLDIMLPNVELQTTIEL 280

The following BLAST results are available for this feature:

BLAST of PI0006266.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006266.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZJ9	2.4e-07	63.79	Lectin receptor kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A6D2KBA3	1.7e-05	41.46	DUF4219 domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_L...	[more]

BLAST of PI0006266.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040440.1	4.9e-07	63.79	lectin receptor kinase [Cucumis melo var. makuwa] >TYK28888.1 lectin receptor ki...	[more]
CAA7045432.1	3.5e-05	41.46	unnamed protein product [Microthlaspi erraticum]	[more]

BLAST of PI0006266.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0006266	PI0006266	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0006266.1-exon	PI0006266.1-exon-chr09:13958914..13959285	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0006266.1-cds	PI0006266.1-cds-chr09:13958914..13959285	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0006266.1	PI0006266.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding