PI0005217.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0005217.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	PMD domain-containing protein
Location	chr09: 10679056 .. 10679415 (-)
Sequence length	360
RNA-Seq Expression	PI0005217.1
Synteny	PI0005217.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTACTTCACCGAATGCTTCTTATCTGAAAATAGGCACCTTACAATCCTTACTGATAAGAATCAACCAAGAGAAAATGGTCTCAGTCTCCTTGTAGAGAAGTCGTTGACGGGTCATTTTGCAGATTTTTGGCCAAACCTAGACAACAGCTCGATTCTTCCCAAATTATCTGTGGAGATACCTTTGTCTCAGGGAAAAAACGCATGGGTCCTGCAATCTTCTATCCATGATGAGGCTCCTAATGCCAATCGAGTCCTCACTCTCGGACATCGCATAATTGAAGGTCAAACCCGTTGGGGTGCCGTGACTAAAGTCCCAGGAAAATTCTGCTTTACTGACTGTTATTGGAGTGGCTAG

mRNA sequence

ATGGTTTACTTCACCGAATGCTTCTTATCTGAAAATAGGCACCTTACAATCCTTACTGATAAGAATCAACCAAGAGAAAATGGTCTCAGTCTCCTTGTAGAGAAGTCGTTGACGGGTCATTTTGCAGATTTTTGGCCAAACCTAGACAACAGCTCGATTCTTCCCAAATTATCTGTGGAGATACCTTTGTCTCAGGGAAAAAACGCATGGGTCCTGCAATCTTCTATCCATGATGAGGCTCCTAATGCCAATCGAGTCCTCACTCTCGGACATCGCATAATTGAAGGTCAAACCCGTTGGGGTGCCGTGACTAAAGTCCCAGGAAAATTCTGCTTTACTGACTGTTATTGGAGTGGCTAG

Coding sequence (CDS)

ATGGTTTACTTCACCGAATGCTTCTTATCTGAAAATAGGCACCTTACAATCCTTACTGATAAGAATCAACCAAGAGAAAATGGTCTCAGTCTCCTTGTAGAGAAGTCGTTGACGGGTCATTTTGCAGATTTTTGGCCAAACCTAGACAACAGCTCGATTCTTCCCAAATTATCTGTGGAGATACCTTTGTCTCAGGGAAAAAACGCATGGGTCCTGCAATCTTCTATCCATGATGAGGCTCCTAATGCCAATCGAGTCCTCACTCTCGGACATCGCATAATTGAAGGTCAAACCCGTTGGGGTGCCGTGACTAAAGTCCCAGGAAAATTCTGCTTTACTGACTGTTATTGGAGTGGCTAG

Protein sequence

MVYFTECFLSENRHLTILTDKNQPRENGLSLLVEKSLTGHFADFWPNLDNSSILPKLSVEIPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRWGAVTKVPGKFCFTDCYWSG

Homology

[Close]

BLAST of PI0005217.1 vs. ExPASy TrEMBL
Match: A0A5A7TZN9 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G001160 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.0e-48
Identity = 90/117 (76.92%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 1   MVYFTECFLSENRHLTILTDKNQPRENGLSLLVEKSLTGHFADFWPNLDNSSILPKLSVE 60
           MVYFTE FLS  RHL IL+D+NQPRE+GLSL+VEKS  G FAD WP+LDN+S+LP+LSVE
Sbjct: 17  MVYFTERFLSGVRHLIILSDRNQPREDGLSLIVEKSWAGAFADHWPHLDNNSVLPRLSVE 76

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRWGAVTKVPGKFCFTDCYW 118
           IPLS+GK+AWVLQSSIH+EAPN+ R LTLG R+IEGQTRWG +TKVPG+FCFTDCYW
Sbjct: 77  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFCFTDCYW 133

[Close]

BLAST of PI0005217.1 vs. ExPASy TrEMBL
Match: A0A5D3C267 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001330 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.0e-48
Identity = 90/117 (76.92%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 1   MVYFTECFLSENRHLTILTDKNQPRENGLSLLVEKSLTGHFADFWPNLDNSSILPKLSVE 60
           MVYFTE FLS  RHL IL+D+NQPRE+GLSL+VEKS  G FAD WP+LDN+S+LP+LSVE
Sbjct: 17  MVYFTERFLSGVRHLIILSDRNQPREDGLSLIVEKSWAGAFADHWPHLDNNSVLPRLSVE 76

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRWGAVTKVPGKFCFTDCYW 118
           IPLS+GK+AWVLQSSIH+EAPN+ R LTLG R+IEGQTRWG +TKVPG+FCFTDCYW
Sbjct: 77  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFCFTDCYW 133

[Close]

BLAST of PI0005217.1 vs. ExPASy TrEMBL
Match: A0A5A7TZ08 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00990 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.7e-48
Identity = 90/117 (76.92%), Postives = 103/117 (88.03%), Query Frame = 0


Query: 1   MVYFTECFLSENRHLTILTDKNQPRENGLSLLVEKSLTGHFADFWPNLDNSSILPKLSVE 60
           MVYFTE FLSE RHL IL+D+NQPRE+GLSL+VE    G FAD WP LDN+S+LP+LSVE
Sbjct: 60  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVE 119

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRWGAVTKVPGKFCFTDCYW 118
           IPLS+GK+AWVLQSSIH+EAPN+ R LTLG R+IEGQTRWG VTKVPG+FCFTDCYW
Sbjct: 120 IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYW 176

[Close]

BLAST of PI0005217.1 vs. ExPASy TrEMBL
Match: A0A5A7TX42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00950 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.6e-48
Identity = 89/117 (76.07%), Postives = 103/117 (88.03%), Query Frame = 0


Query: 1   MVYFTECFLSENRHLTILTDKNQPRENGLSLLVEKSLTGHFADFWPNLDNSSILPKLSVE 60
           MVYFTE FLS  RHL IL+D+NQPRE+GLSL+VEK   G FAD WP LDN+S+LP+LSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRWGAVTKVPGKFCFTDCYW 118
           +PLS+GK+AWVLQSSIH+EAPN+ R LTLG R+IEGQTRWG VTKVPG+FCFTDCYW
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYW 117

[Close]

BLAST of PI0005217.1 vs. ExPASy TrEMBL
Match: A0A5A7UET3 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G001110 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.6e-48
Identity = 89/117 (76.07%), Postives = 103/117 (88.03%), Query Frame = 0


Query: 1   MVYFTECFLSENRHLTILTDKNQPRENGLSLLVEKSLTGHFADFWPNLDNSSILPKLSVE 60
           MVYFTE FLS  RHL IL+D+NQPRE+GLSL+VEK   G FAD WP LDN+S+LP+LSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRWGAVTKVPGKFCFTDCYW 118
           IPLS+GK+AW+LQSSIH+EAPN+ R LTLG R+IEGQTRWG VTKVPG+FCFTDCYW
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYW 117

[Close]

BLAST of PI0005217.1 vs. NCBI nr
Match: TYK04516.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.4 bits (511), Expect = 4.2e-48
Identity = 90/117 (76.92%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 1   MVYFTECFLSENRHLTILTDKNQPRENGLSLLVEKSLTGHFADFWPNLDNSSILPKLSVE 60
           MVYFTE FLS  RHL IL+D+NQPRE+GLSL+VEKS  G FAD WP+LDN+S+LP+LSVE
Sbjct: 17  MVYFTERFLSGVRHLIILSDRNQPREDGLSLIVEKSWAGAFADHWPHLDNNSVLPRLSVE 76

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRWGAVTKVPGKFCFTDCYW 118
           IPLS+GK+AWVLQSSIH+EAPN+ R LTLG R+IEGQTRWG +TKVPG+FCFTDCYW
Sbjct: 77  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFCFTDCYW 133

[Close]

BLAST of PI0005217.1 vs. NCBI nr
Match: KAA0046821.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.4 bits (511), Expect = 4.2e-48
Identity = 90/117 (76.92%), Postives = 105/117 (89.74%), Query Frame = 0


Query: 1   MVYFTECFLSENRHLTILTDKNQPRENGLSLLVEKSLTGHFADFWPNLDNSSILPKLSVE 60
           MVYFTE FLS  RHL IL+D+NQPRE+GLSL+VEKS  G FAD WP+LDN+S+LP+LSVE
Sbjct: 17  MVYFTERFLSGVRHLIILSDRNQPREDGLSLIVEKSWAGAFADHWPHLDNNSVLPRLSVE 76

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRWGAVTKVPGKFCFTDCYW 118
           IPLS+GK+AWVLQSSIH+EAPN+ R LTLG R+IEGQTRWG +TKVPG+FCFTDCYW
Sbjct: 77  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFCFTDCYW 133

[Close]

BLAST of PI0005217.1 vs. NCBI nr
Match: KAA0048380.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 5.5e-48
Identity = 90/117 (76.92%), Postives = 103/117 (88.03%), Query Frame = 0


Query: 1   MVYFTECFLSENRHLTILTDKNQPRENGLSLLVEKSLTGHFADFWPNLDNSSILPKLSVE 60
           MVYFTE FLSE RHL IL+D+NQPRE+GLSL+VE    G FAD WP LDN+S+LP+LSVE
Sbjct: 60  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLSVE 119

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRWGAVTKVPGKFCFTDCYW 118
           IPLS+GK+AWVLQSSIH+EAPN+ R LTLG R+IEGQTRWG VTKVPG+FCFTDCYW
Sbjct: 120 IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYW 176

[Close]

BLAST of PI0005217.1 vs. NCBI nr
Match: KAA0047478.1 (hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 9.4e-48
Identity = 89/117 (76.07%), Postives = 103/117 (88.03%), Query Frame = 0


Query: 1   MVYFTECFLSENRHLTILTDKNQPRENGLSLLVEKSLTGHFADFWPNLDNSSILPKLSVE 60
           MVYFTE FLS  RHL IL+D+NQPRE+GLSL+VEK   G FAD WP LDN+S+LP+LSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRWGAVTKVPGKFCFTDCYW 118
           +PLS+GK+AWVLQSSIH+EAPN+ R LTLG R+IEGQTRWG VTKVPG+FCFTDCYW
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYW 117

[Close]

BLAST of PI0005217.1 vs. NCBI nr
Match: KAA0053734.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 9.4e-48
Identity = 89/117 (76.07%), Postives = 103/117 (88.03%), Query Frame = 0


Query: 1   MVYFTECFLSENRHLTILTDKNQPRENGLSLLVEKSLTGHFADFWPNLDNSSILPKLSVE 60
           MVYFTE FLS  RHL IL+D+NQPRE+GLSL+VEK   G FAD WP LDN+S+LP+LSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSQGKNAWVLQSSIHDEAPNANRVLTLGHRIIEGQTRWGAVTKVPGKFCFTDCYW 118
           IPLS+GK+AW+LQSSIH+EAPN+ R LTLG R+IEGQTRWG VTKVPG+FCFTDCYW
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYW 117

The following BLAST results are available for this feature:

BLAST of PI0005217.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005217.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZN9	2.0e-48	76.92	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3C267	2.0e-48	76.92	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TZ08	2.7e-48	76.92	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7TX42	4.6e-48	76.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UET3	4.6e-48	76.07	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of PI0005217.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04516.1	4.2e-48	76.92	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0046821.1	4.2e-48	76.92	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0048380.1	5.5e-48	76.92	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0047478.1	9.4e-48	76.07	hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]	[more]
KAA0053734.1	9.4e-48	76.07	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0005217.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0005217	PI0005217	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0005217.1-exon	PI0005217.1-exon-chr09:10679056..10679415	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0005217.1-cds	PI0005217.1-cds-chr09:10679056..10679415	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0005217.1	PI0005217.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane