PI0004771.1 (mRNA) Melon (PI 482460) v1

Overview
NamePI0004771.1
TypemRNA
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr01: 5024434 .. 5024719 (-)
Sequence length219
RNA-Seq ExpressionPI0004771.1
SyntenyPI0004771.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTCCCTTTTATTCTCCATTGTTCTCTGGCGCTCACCACCATTGACTGTCTTTGCAAAAAGCTTTACTCTGAGTACTCCAATGGCGGAATTAATCCCAATCTCACTCTCAAACCTCAGTAATCGCATCCGTTTCTTGCTTTCTTTCTTTTTTTTTTTTTTTTCCTGTTATGGGCGTGGAGTGAGAAAACCTGTTGGTGCTGAACCAATAAAGCTGGCTATGGATAGTGGGAAGATGGTGACAGTGAACATCGAAGCGGAGGGGAAAGAGGAAACATTCTAA

mRNA sequence

ATGTCTTTCCCTTTTATTCTCCATTGTTCTCTGGCGCTCACCACCATTGACTGTCTTTGCAAAAAGCTTTACTCTGAGTACTCCAATGGCGGAATTAATCCCAATCTCACTCTCAAACCTCAAAAACCTGTTGGTGCTGAACCAATAAAGCTGGCTATGGATAGTGGGAAGATGGTGACAGTGAACATCGAAGCGGAGGGGAAAGAGGAAACATTCTAA

Coding sequence (CDS)

ATGTCTTTCCCTTTTATTCTCCATTGTTCTCTGGCGCTCACCACCATTGACTGTCTTTGCAAAAAGCTTTACTCTGAGTACTCCAATGGCGGAATTAATCCCAATCTCACTCTCAAACCTCAAAAACCTGTTGGTGCTGAACCAATAAAGCTGGCTATGGATAGTGGGAAGATGGTGACAGTGAACATCGAAGCGGAGGGGAAAGAGGAAACATTCTAA

Protein sequence

MSFPFILHCSLALTTIDCLCKKLYSEYSNGGINPNLTLKPQKPVGAEPIKLAMDSGKMVTVNIEAEGKEETF
Homology
[Close]
BLAST of PI0004771.1 vs. ExPASy TrEMBL
Match: A0A0A0K0P4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G017140 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.3e-16
Identity = 48/66 (72.73%), Postives = 52/66 (78.79%), Query Frame = 0 

Query: 5  FILHCSLALTTIDCLCKKLYSEYSNGGINPNLTLKPQKPVGAEPIKLAMDSGKMVTVNIE 64
          F L+CSLALTTIDCLCKKLYSEYSNGGINPNL LKP          +AMDS KMVT+NIE
Sbjct: 5  FFLYCSLALTTIDCLCKKLYSEYSNGGINPNLNLKPP--------AMAMDSVKMVTMNIE 62

Query: 65 AEGKEE 71
           EG+EE
Sbjct: 65 REGREE 62

[Close]
BLAST of PI0004771.1 vs. NCBI nr
Match: KGN43280.1 (hypothetical protein Csa_020352 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 2.6e-16
Identity = 48/66 (72.73%), Postives = 52/66 (78.79%), Query Frame = 0 

Query: 5  FILHCSLALTTIDCLCKKLYSEYSNGGINPNLTLKPQKPVGAEPIKLAMDSGKMVTVNIE 64
          F L+CSLALTTIDCLCKKLYSEYSNGGINPNL LKP          +AMDS KMVT+NIE
Sbjct: 5  FFLYCSLALTTIDCLCKKLYSEYSNGGINPNLNLKPP--------AMAMDSVKMVTMNIE 62

Query: 65 AEGKEE 71
           EG+EE
Sbjct: 65 REGREE 62

The following BLAST results are available for this feature:
BLAST of PI0004771.1 vs.
Match NameE-valueIdentityDescription
BLAST of PI0004771.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K0P41.3e-1672.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G017140 PE=4 SV=1[more]
BLAST of PI0004771.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43280.12.6e-1672.73hypothetical protein Csa_020352 [Cucumis sativus][more]
BLAST of PI0004771.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
PI0004771PI0004771gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0004771.1-exonPI0004771.1-exon-chr01:5024434..5024530exon
PI0004771.1-exonPI0004771.1-exon-chr01:5024598..5024719exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0004771.1-cdsPI0004771.1-cds-chr01:5024434..5024530CDS
PI0004771.1-cdsPI0004771.1-cds-chr01:5024598..5024719CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
PI0004771.1PI0004771.1-proteinpolypeptide