PI0002593.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0002593.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr02: 15080258 .. 15080713 (-)
Sequence length	456
RNA-Seq Expression	PI0002593.1
Synteny	PI0002593.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACTGGTGATAATTATGCGATGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTGCGCTTCGTCTTAATGGAGGAATGTCCTCCTTTCCCTATTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCAAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAAATGTTTGGACAACCGTCCATTCAAATCCGACATGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGTCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGAGGTGGTCATTGACGAGTAA

mRNA sequence

ATGTTTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACTGGTGATAATTATGCGATGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTGCGCTTCGTCTTAATGGAGGAATGTCCTCCTTTCCCTATTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCAAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAAATGTTTGGACAACCGTCCATTCAAATCCGACATGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGTCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGAGGTGGTCATTGACGAGTAA

Coding sequence (CDS)

ATGTTTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACTGGTGATAATTATGCGATGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTGCGCTTCGTCTTAATGGAGGAATGTCCTCCTTTCCCTATTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCAAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAAATGTTTGGACAACCGTCCATTCAAATCCGACATGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGTCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGAGGTGGTCATTGACGAGTAA

Protein sequence

MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE

Homology

[Close]

BLAST of PI0002593.1 vs. ExPASy TrEMBL
Match: A0A5D3D0D9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.3e-60
Identity = 119/151 (78.81%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 1   MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
           M SSIIALLK ++LTG+NYA WKS LNMILVI DLRFVLMEECPPFP +NASQ+V+DA+D
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
            WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
           RMKEGQSVREHVL M+V FNVAE N+ + DE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDE 151

[Close]

BLAST of PI0002593.1 vs. ExPASy TrEMBL
Match: A0A5A7VA67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00110 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.3e-60
Identity = 119/151 (78.81%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 1   MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
           M SSIIALLK ++LTG+NYA WKS LNMILVI DLRFVLMEECPPFP +NASQ+V+DA+D
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
            WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
           RMKEGQSVREHVL M+V FNVAE N+ + DE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDE 151

[Close]

BLAST of PI0002593.1 vs. ExPASy TrEMBL
Match: A0A5D3BM47 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00040 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.3e-57
Identity = 118/151 (78.15%), Postives = 133/151 (88.08%), Query Frame = 0


Query: 1   MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
           M SSIIALLK E LTG+NYAMWKS LNMILVI DLRF+LMEECPPFP +NAS+++RDA++
Sbjct: 1   MSSSIIALLKKEHLTGENYAMWKSKLNMILVIVDLRFILMEECPPFPTQNASESIRDAYN 60

Query: 61  RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
           R TKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E+F QPSIQI+ EAIKYVYNA
Sbjct: 61  RRTKANDKACLYILASMSDILSKKHEIMVTARQIMDSHKELFRQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
            MKEGQSVREH LDM+V FNVAE N  VIDE
Sbjct: 121 HMKEGQSVREHCLDMIVNFNVAEMNGAVIDE 151

[Close]

BLAST of PI0002593.1 vs. ExPASy TrEMBL
Match: A0A5D3DQJ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00330 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 9.8e-56
Identity = 112/151 (74.17%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 1   MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
           M SSIIALLK ++LTG NY  WKS LNMILVI DLR +LME+CPPFP +NASQ+V+DA+D
Sbjct: 1   MSSSIIALLKKDQLTGKNYVTWKSKLNMILVIADLRVILMEDCPPFPSQNASQSVKDAYD 60

Query: 61  RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
            WTK N+KA++YIL SM D+LSKKHE MVTARQIMDS++EMFGQPSIQI+ EAIKYVYN 
Sbjct: 61  CWTKTNDKARLYILVSMFDILSKKHEIMVTARQIMDSIREMFGQPSIQIKQEAIKYVYNV 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
            MKE QSVREHVLDM+V FN+AE N VV DE
Sbjct: 121 CMKEDQSVREHVLDMIVNFNIAEMNRVVFDE 151

[Close]

BLAST of PI0002593.1 vs. ExPASy TrEMBL
Match: A0A6J1E205 (uncharacterized protein LOC111025258 OS=Momordica charantia OX=3673 GN=LOC111025258 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.3e-55
Identity = 111/151 (73.51%), Postives = 127/151 (84.11%), Query Frame = 0


Query: 1   MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
           M +S I LL ++KL GDNY +WKSNLN ILVIDDLRFVL EECPP    N++QTVRDAHD
Sbjct: 1   MSTSTIQLLASDKLNGDNYGIWKSNLNTILVIDDLRFVLTEECPPALAPNSNQTVRDAHD 60

Query: 61  RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
           RW KANEKA+VYILAS+SDVLSKKHE + TAR+IMDSLQ +FGQPS  I H+AIKYVYN 
Sbjct: 61  RWFKANEKARVYILASISDVLSKKHEGLATAREIMDSLQALFGQPSTSIIHDAIKYVYNC 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
           RMKEG SVREHVL+MMV FNVAE N+ V++E
Sbjct: 121 RMKEGSSVREHVLNMMVHFNVAEVNDAVMNE 151

[Close]

BLAST of PI0002593.1 vs. NCBI nr
Match: KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 241.5 bits (615), Expect = 4.7e-60
Identity = 119/151 (78.81%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 1   MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
           M SSIIALLK ++LTG+NYA WKS LNMILVI DLRFVLMEECPPFP +NASQ+V+DA+D
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
            WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
           RMKEGQSVREHVL M+V FNVAE N+ + DE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDE 151

[Close]

BLAST of PI0002593.1 vs. NCBI nr
Match: TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 241.5 bits (615), Expect = 4.7e-60
Identity = 119/151 (78.81%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 1   MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
           M SSIIALLK ++LTG+NYA WKS LNMILVI DLRFVLMEECPPFP +NASQ+V+DA+D
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
            WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
           RMKEGQSVREHVL M+V FNVAE N+ + DE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDE 151

[Close]

BLAST of PI0002593.1 vs. NCBI nr
Match: TYK00843.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 231.5 bits (589), Expect = 4.8e-57
Identity = 118/151 (78.15%), Postives = 133/151 (88.08%), Query Frame = 0


Query: 1   MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
           M SSIIALLK E LTG+NYAMWKS LNMILVI DLRF+LMEECPPFP +NAS+++RDA++
Sbjct: 1   MSSSIIALLKKEHLTGENYAMWKSKLNMILVIVDLRFILMEECPPFPTQNASESIRDAYN 60

Query: 61  RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
           R TKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E+F QPSIQI+ EAIKYVYNA
Sbjct: 61  RRTKANDKACLYILASMSDILSKKHEIMVTARQIMDSHKELFRQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
            MKEGQSVREH LDM+V FNVAE N  VIDE
Sbjct: 121 HMKEGQSVREHCLDMIVNFNVAEMNGAVIDE 151

[Close]

BLAST of PI0002593.1 vs. NCBI nr
Match: KAA0040193.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK25936.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 226.1 bits (575), Expect = 2.0e-55
Identity = 112/151 (74.17%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 1   MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
           M SSIIALLK ++LTG NY  WKS LNMILVI DLR +LME+CPPFP +NASQ+V+DA+D
Sbjct: 1   MSSSIIALLKKDQLTGKNYVTWKSKLNMILVIADLRVILMEDCPPFPSQNASQSVKDAYD 60

Query: 61  RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
            WTK N+KA++YIL SM D+LSKKHE MVTARQIMDS++EMFGQPSIQI+ EAIKYVYN 
Sbjct: 61  CWTKTNDKARLYILVSMFDILSKKHEIMVTARQIMDSIREMFGQPSIQIKQEAIKYVYNV 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
            MKE QSVREHVLDM+V FN+AE N VV DE
Sbjct: 121 CMKEDQSVREHVLDMIVNFNIAEMNRVVFDE 151

[Close]

BLAST of PI0002593.1 vs. NCBI nr
Match: XP_022158791.1 (uncharacterized protein LOC111025258 [Momordica charantia])

HSP 1 Score: 223.0 bits (567), Expect = 1.7e-54
Identity = 111/151 (73.51%), Postives = 127/151 (84.11%), Query Frame = 0


Query: 1   MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
           M +S I LL ++KL GDNY +WKSNLN ILVIDDLRFVL EECPP    N++QTVRDAHD
Sbjct: 1   MSTSTIQLLASDKLNGDNYGIWKSNLNTILVIDDLRFVLTEECPPALAPNSNQTVRDAHD 60

Query: 61  RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
           RW KANEKA+VYILAS+SDVLSKKHE + TAR+IMDSLQ +FGQPS  I H+AIKYVYN 
Sbjct: 61  RWFKANEKARVYILASISDVLSKKHEGLATAREIMDSLQALFGQPSTSIIHDAIKYVYNC 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
           RMKEG SVREHVL+MMV FNVAE N+ V++E
Sbjct: 121 RMKEGSSVREHVLNMMVHFNVAEVNDAVMNE 151

The following BLAST results are available for this feature:

BLAST of PI0002593.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0002593.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0D9	2.3e-60	78.81	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210...	[more]
A0A5A7VA67	2.3e-60	78.81	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0011...	[more]
A0A5D3BM47	2.3e-57	78.15	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G0004...	[more]
A0A5D3DQJ2	9.8e-56	74.17	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G0033...	[more]
A0A6J1E205	8.3e-55	73.51	uncharacterized protein LOC111025258 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of PI0002593.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063887.1	4.7e-60	78.81	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15919.1	4.7e-60	78.81	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK00843.1	4.8e-57	78.15	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0040193.1	2.0e-55	74.17	gag/pol protein [Cucumis melo var. makuwa] >TYK25936.1 gag/pol protein [Cucumis ...	[more]
XP_022158791.1	1.7e-54	73.51	uncharacterized protein LOC111025258 [Momordica charantia]	[more]

BLAST of PI0002593.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 62..140 e-value: 2.8E-9 score: 36.9
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 18..150
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 18..150

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0002593	PI0002593	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0002593.1-exon	PI0002593.1-exon-chr02:15080258..15080713	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0002593.1-cds	PI0002593.1-cds-chr02:15080258..15080713	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0002593.1	PI0002593.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding