Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACTGGTGATAATTATGCGATGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTGCGCTTCGTCTTAATGGAGGAATGTCCTCCTTTCCCTATTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCAAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAAATGTTTGGACAACCGTCCATTCAAATCCGACATGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGTCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGAGGTGGTCATTGACGAGTAA
mRNA sequence
ATGTTTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACTGGTGATAATTATGCGATGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTGCGCTTCGTCTTAATGGAGGAATGTCCTCCTTTCCCTATTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCAAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAAATGTTTGGACAACCGTCCATTCAAATCCGACATGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGTCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGAGGTGGTCATTGACGAGTAA
Coding sequence (CDS)
ATGTTTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACTGGTGATAATTATGCGATGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTGCGCTTCGTCTTAATGGAGGAATGTCCTCCTTTCCCTATTCGAAATGCATCCCAGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCAAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAAATGTTTGGACAACCGTCCATTCAAATCCGACATGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGTCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGAGGTGGTCATTGACGAGTAA
Protein sequence
MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHDRWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNEVVIDE
Homology
BLAST of PI0002593 vs. ExPASy TrEMBL
Match:
A0A5D3D0D9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210 PE=4 SV=1)
HSP 1 Score: 241.5 bits (615), Expect = 2.3e-60
Identity = 119/151 (78.81%), Postives = 136/151 (90.07%), Query Frame = 0
Query: 1 MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
M SSIIALLK ++LTG+NYA WKS LNMILVI DLRFVLMEECPPFP +NASQ+V+DA+D
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
RMKEGQSVREHVL M+V FNVAE N+ + DE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDE 151
BLAST of PI0002593 vs. ExPASy TrEMBL
Match:
A0A5A7VA67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00110 PE=4 SV=1)
HSP 1 Score: 241.5 bits (615), Expect = 2.3e-60
Identity = 119/151 (78.81%), Postives = 136/151 (90.07%), Query Frame = 0
Query: 1 MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
M SSIIALLK ++LTG+NYA WKS LNMILVI DLRFVLMEECPPFP +NASQ+V+DA+D
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
RMKEGQSVREHVL M+V FNVAE N+ + DE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDE 151
BLAST of PI0002593 vs. ExPASy TrEMBL
Match:
A0A5D3BM47 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00040 PE=4 SV=1)
HSP 1 Score: 231.5 bits (589), Expect = 2.3e-57
Identity = 118/151 (78.15%), Postives = 133/151 (88.08%), Query Frame = 0
Query: 1 MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
M SSIIALLK E LTG+NYAMWKS LNMILVI DLRF+LMEECPPFP +NAS+++RDA++
Sbjct: 1 MSSSIIALLKKEHLTGENYAMWKSKLNMILVIVDLRFILMEECPPFPTQNASESIRDAYN 60
Query: 61 RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
R TKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E+F QPSIQI+ EAIKYVYNA
Sbjct: 61 RRTKANDKACLYILASMSDILSKKHEIMVTARQIMDSHKELFRQPSIQIKQEAIKYVYNA 120
Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
MKEGQSVREH LDM+V FNVAE N VIDE
Sbjct: 121 HMKEGQSVREHCLDMIVNFNVAEMNGAVIDE 151
BLAST of PI0002593 vs. ExPASy TrEMBL
Match:
A0A5D3DQJ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00330 PE=4 SV=1)
HSP 1 Score: 226.1 bits (575), Expect = 9.8e-56
Identity = 112/151 (74.17%), Postives = 129/151 (85.43%), Query Frame = 0
Query: 1 MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
M SSIIALLK ++LTG NY WKS LNMILVI DLR +LME+CPPFP +NASQ+V+DA+D
Sbjct: 1 MSSSIIALLKKDQLTGKNYVTWKSKLNMILVIADLRVILMEDCPPFPSQNASQSVKDAYD 60
Query: 61 RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
WTK N+KA++YIL SM D+LSKKHE MVTARQIMDS++EMFGQPSIQI+ EAIKYVYN
Sbjct: 61 CWTKTNDKARLYILVSMFDILSKKHEIMVTARQIMDSIREMFGQPSIQIKQEAIKYVYNV 120
Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
MKE QSVREHVLDM+V FN+AE N VV DE
Sbjct: 121 CMKEDQSVREHVLDMIVNFNIAEMNRVVFDE 151
BLAST of PI0002593 vs. ExPASy TrEMBL
Match:
A0A6J1E205 (uncharacterized protein LOC111025258 OS=Momordica charantia OX=3673 GN=LOC111025258 PE=4 SV=1)
HSP 1 Score: 223.0 bits (567), Expect = 8.3e-55
Identity = 111/151 (73.51%), Postives = 127/151 (84.11%), Query Frame = 0
Query: 1 MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
M +S I LL ++KL GDNY +WKSNLN ILVIDDLRFVL EECPP N++QTVRDAHD
Sbjct: 1 MSTSTIQLLASDKLNGDNYGIWKSNLNTILVIDDLRFVLTEECPPALAPNSNQTVRDAHD 60
Query: 61 RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
RW KANEKA+VYILAS+SDVLSKKHE + TAR+IMDSLQ +FGQPS I H+AIKYVYN
Sbjct: 61 RWFKANEKARVYILASISDVLSKKHEGLATAREIMDSLQALFGQPSTSIIHDAIKYVYNC 120
Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
RMKEG SVREHVL+MMV FNVAE N+ V++E
Sbjct: 121 RMKEGSSVREHVLNMMVHFNVAEVNDAVMNE 151
BLAST of PI0002593 vs. NCBI nr
Match:
KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 241.5 bits (615), Expect = 4.7e-60
Identity = 119/151 (78.81%), Postives = 136/151 (90.07%), Query Frame = 0
Query: 1 MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
M SSIIALLK ++LTG+NYA WKS LNMILVI DLRFVLMEECPPFP +NASQ+V+DA+D
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
RMKEGQSVREHVL M+V FNVAE N+ + DE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDE 151
BLAST of PI0002593 vs. NCBI nr
Match:
TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 241.5 bits (615), Expect = 4.7e-60
Identity = 119/151 (78.81%), Postives = 136/151 (90.07%), Query Frame = 0
Query: 1 MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
M SSIIALLK ++LTG+NYA WKS LNMILVI DLRFVLMEECPPFP +NASQ+V+DA+D
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
RMKEGQSVREHVL M+V FNVAE N+ + DE
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDE 151
BLAST of PI0002593 vs. NCBI nr
Match:
TYK00843.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 231.5 bits (589), Expect = 4.8e-57
Identity = 118/151 (78.15%), Postives = 133/151 (88.08%), Query Frame = 0
Query: 1 MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
M SSIIALLK E LTG+NYAMWKS LNMILVI DLRF+LMEECPPFP +NAS+++RDA++
Sbjct: 1 MSSSIIALLKKEHLTGENYAMWKSKLNMILVIVDLRFILMEECPPFPTQNASESIRDAYN 60
Query: 61 RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
R TKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E+F QPSIQI+ EAIKYVYNA
Sbjct: 61 RRTKANDKACLYILASMSDILSKKHEIMVTARQIMDSHKELFRQPSIQIKQEAIKYVYNA 120
Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
MKEGQSVREH LDM+V FNVAE N VIDE
Sbjct: 121 HMKEGQSVREHCLDMIVNFNVAEMNGAVIDE 151
BLAST of PI0002593 vs. NCBI nr
Match:
KAA0040193.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK25936.1 gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 226.1 bits (575), Expect = 2.0e-55
Identity = 112/151 (74.17%), Postives = 129/151 (85.43%), Query Frame = 0
Query: 1 MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
M SSIIALLK ++LTG NY WKS LNMILVI DLR +LME+CPPFP +NASQ+V+DA+D
Sbjct: 1 MSSSIIALLKKDQLTGKNYVTWKSKLNMILVIADLRVILMEDCPPFPSQNASQSVKDAYD 60
Query: 61 RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
WTK N+KA++YIL SM D+LSKKHE MVTARQIMDS++EMFGQPSIQI+ EAIKYVYN
Sbjct: 61 CWTKTNDKARLYILVSMFDILSKKHEIMVTARQIMDSIREMFGQPSIQIKQEAIKYVYNV 120
Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
MKE QSVREHVLDM+V FN+AE N VV DE
Sbjct: 121 CMKEDQSVREHVLDMIVNFNIAEMNRVVFDE 151
BLAST of PI0002593 vs. NCBI nr
Match:
XP_022158791.1 (uncharacterized protein LOC111025258 [Momordica charantia])
HSP 1 Score: 223.0 bits (567), Expect = 1.7e-54
Identity = 111/151 (73.51%), Postives = 127/151 (84.11%), Query Frame = 0
Query: 1 MFSSIIALLKNEKLTGDNYAMWKSNLNMILVIDDLRFVLMEECPPFPIRNASQTVRDAHD 60
M +S I LL ++KL GDNY +WKSNLN ILVIDDLRFVL EECPP N++QTVRDAHD
Sbjct: 1 MSTSTIQLLASDKLNGDNYGIWKSNLNTILVIDDLRFVLTEECPPALAPNSNQTVRDAHD 60
Query: 61 RWTKANEKAQVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
RW KANEKA+VYILAS+SDVLSKKHE + TAR+IMDSLQ +FGQPS I H+AIKYVYN
Sbjct: 61 RWFKANEKARVYILASISDVLSKKHEGLATAREIMDSLQALFGQPSTSIIHDAIKYVYNC 120
Query: 121 RMKEGQSVREHVLDMMVQFNVAETNEVVIDE 152
RMKEG SVREHVL+MMV FNVAE N+ V++E
Sbjct: 121 RMKEGSSVREHVLNMMVHFNVAEVNDAVMNE 151
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3D0D9 | 2.3e-60 | 78.81 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210... | [more] |
| A0A5A7VA67 | 2.3e-60 | 78.81 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0011... | [more] |
| A0A5D3BM47 | 2.3e-57 | 78.15 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G0004... | [more] |
| A0A5D3DQJ2 | 9.8e-56 | 74.17 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G0033... | [more] |
| A0A6J1E205 | 8.3e-55 | 73.51 | uncharacterized protein LOC111025258 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0063887.1 | 4.7e-60 | 78.81 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| TYK15919.1 | 4.7e-60 | 78.81 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| TYK00843.1 | 4.8e-57 | 78.15 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| KAA0040193.1 | 2.0e-55 | 74.17 | gag/pol protein [Cucumis melo var. makuwa] >TYK25936.1 gag/pol protein [Cucumis ... | [more] |
| XP_022158791.1 | 1.7e-54 | 73.51 | uncharacterized protein LOC111025258 [Momordica charantia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
