PI0001916.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0001916.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	LOW QUALITY PROTEIN: uncharacterized protein LOC111469948
Location	chr10: 10019242 .. 10019592 (-)
Sequence length	351
RNA-Seq Expression	PI0001916.1
Synteny	PI0001916.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCACTTTCTTGAGGAAATGACCATAGACGAGGATGAGGAAGCTACCATGAATCGATTCTACAACGAACTTAACGAGAAAATTGTTGAGATGCTTGTCGATCATGAAGAAATTCAACCTTGTGAGAATTTGGAAGAAATGGTGCACATTGCCATCAAGATAGAACAACTACTTCAAAGGAAACCTTCAAGGTACACTAAATCTAAATCTAGTACTAATTTAAACTCATTAGTAGAAAAAGTTAGTTTACCTACAAAATTTGAGCATTTTGATAGGGTAGGAAGTAGTAAAGAGATATTTGATATTGTCGTGTCTATGTACGATCATAATGTTTTGTCTAGTAAATAA

mRNA sequence

ATGTTGCACTTTCTTGAGGAAATGACCATAGACGAGGATGAGGAAGCTACCATGAATCGATTCTACAACGAACTTAACGAGAAAATTGTTGAGATGCTTGTCGATCATGAAGAAATTCAACCTTGTGAGAATTTGGAAGAAATGGTGCACATTGCCATCAAGATAGAACAACTACTTCAAAGGAAACCTTCAAGGTACACTAAATCTAAATCTAGTACTAATTTAAACTCATTAGTAGAAAAAGTTAGTTTACCTACAAAATTTGAGCATTTTGATAGGGTAGGAAGTAGTAAAGAGATATTTGATATTGTCGTGTCTATGTACGATCATAATGTTTTGTCTAGTAAATAA

Coding sequence (CDS)

ATGTTGCACTTTCTTGAGGAAATGACCATAGACGAGGATGAGGAAGCTACCATGAATCGATTCTACAACGAACTTAACGAGAAAATTGTTGAGATGCTTGTCGATCATGAAGAAATTCAACCTTGTGAGAATTTGGAAGAAATGGTGCACATTGCCATCAAGATAGAACAACTACTTCAAAGGAAACCTTCAAGGTACACTAAATCTAAATCTAGTACTAATTTAAACTCATTAGTAGAAAAAGTTAGTTTACCTACAAAATTTGAGCATTTTGATAGGGTAGGAAGTAGTAAAGAGATATTTGATATTGTCGTGTCTATGTACGATCATAATGTTTTGTCTAGTAAATAA

Protein sequence

MLHFLEEMTIDEDEEATMNRFYNELNEKIVEMLVDHEEIQPCENLEEMVHIAIKIEQLLQRKPSRYTKSKSSTNLNSLVEKVSLPTKFEHFDRVGSSKEIFDIVVSMYDHNVLSSK

Homology

[Close]

BLAST of PI0001916.1 vs. ExPASy TrEMBL
Match: A0A5A7UE26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G001990 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.3e-10
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1  MLHFLEEMTIDEDEEATMNRFYNELNEKIVEMLVDHEEIQPCENLEEMVHIAIK 55
          ML  LE+MTI ED+E  +NRFYN LN++  EMLVDHEEI+ CENLE+MVH+AI+
Sbjct: 12 MLQLLEKMTIYEDKEVVINRFYNGLNKESFEMLVDHEEIRCCENLEDMVHVAIR 65

[Close]

BLAST of PI0001916.1 vs. ExPASy TrEMBL
Match: A0A6J1G2Q3 (uncharacterized protein LOC111450286 OS=Cucurbita moschata OX=3662 GN=LOC111450286 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-05
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 5   LEEMTIDEDEEATMNRFYNELNEKIVEMLVDHEEIQPCENLEEMVHIAIKIEQLLQRKPS 64
           ++ + +DED EA M RF N LN +I     D  ++QP  N+EE++HIAIKIE+ +QR+  
Sbjct: 63  MDRLELDEDMEALMARFLNGLNIEI----ADKTDLQPYSNIEELLHIAIKIERQIQRRSQ 122

Query: 65  RYTKSKSSTNLNSLVEKVSLPTKFEH 91
           RY+ SK+  N  S  +K S    ++H
Sbjct: 123 RYS-SKTFPNSTSTWKKDSKSIDYKH 143

[Close]

BLAST of PI0001916.1 vs. ExPASy TrEMBL
Match: A0A6J1EVV9 (uncharacterized protein LOC111436463 OS=Cucurbita moschata OX=3662 GN=LOC111436463 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.1e-05
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 5   LEEMTIDEDEEATMNRFYNELNEKIVEMLVDHEEIQPCENLEEMVHIAIKIEQLLQRKPS 64
           ++ + +DED EA M RF N LN +I     D  ++QP  N+EE++HIAIKIE+ +QR+  
Sbjct: 63  MDRLELDEDMEALMARFLNGLNIEI----ADKTDLQPYSNIEELLHIAIKIERQIQRRSQ 122

Query: 65  RYTKSKSSTNLNSLVEKVSLPTKFEH 91
           RY+ SK+  N  S  +K S    ++H
Sbjct: 123 RYS-SKTFPNSTSTWKKESKNIDYKH 143

[Close]

BLAST of PI0001916.1 vs. ExPASy TrEMBL
Match: A0A6J1EQJ1 (uncharacterized protein LOC111436530 OS=Cucurbita moschata OX=3662 GN=LOC111436530 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.7e-05
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 5   LEEMTIDEDEEATMNRFYNELNEKIVEMLVDHEEIQPCENLEEMVHIAIKIEQLLQRKPS 64
           ++ + +DED EA M RF N LN +I     D  ++QP  N+EE++HIAIKIE+ +QR+  
Sbjct: 63  MDRLELDEDMEALMARFLNGLNIEI----ADKTDLQPYSNIEELLHIAIKIERQIQRRSQ 122

Query: 65  RYTKSKSSTNLNSLVEKVSLPTKFEH 91
           RY+ SK+  N  S  +K S    ++H
Sbjct: 123 RYS-SKTFPNSTSTWKKDSKNIDYKH 143

[Close]

BLAST of PI0001916.1 vs. ExPASy TrEMBL
Match: A0A6J1I8S0 (uncharacterized protein LOC111472489 OS=Cucurbita maxima OX=3661 GN=LOC111472489 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.1e-05
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 5   LEEMTIDEDEEATMNRFYNELNEKIVEMLVDHEEIQPCENLEEMVHIAIKIEQLLQRKPS 64
           ++ + +DED EA M RF N LN +I     D  ++QP  N+EE++HIAIKIE+ +QR+  
Sbjct: 63  MDRLELDEDMEALMARFLNGLNTEI----ADKTDLQPYSNIEELLHIAIKIERQIQRRSQ 122

Query: 65  RYTKSKSSTNLNSLVEKVSLPTKFEH 91
           RY+ SK+  N  S  ++ S    + H
Sbjct: 123 RYS-SKTFPNSTSTWKRDSKNIDYTH 143

[Close]

BLAST of PI0001916.1 vs. NCBI nr
Match: KAA0051791.1 (hypothetical protein E6C27_scaffold60G001990 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 1  MLHFLEEMTIDEDEEATMNRFYNELNEKIVEMLVDHEEIQPCENLEEMVHIAIK 55
          ML  LE+MTI ED+E  +NRFYN LN++  EMLVDHEEI+ CENLE+MVH+AI+
Sbjct: 12 MLQLLEKMTIYEDKEVVINRFYNGLNKESFEMLVDHEEIRCCENLEDMVHVAIR 65

[Close]

BLAST of PI0001916.1 vs. NCBI nr
Match: XP_038887118.1 (uncharacterized protein K02A2.6-like [Benincasa hispida])

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 5   LEEMTIDEDEEATMNRFYNELNEKIVEMLVDHEEIQPCENLEEMVHIAIKIEQLLQRKPS 64
           ++ + +DED E  M RF N LN++I     D  ++QP  ++EEM+H+AIK+E+ L  K +
Sbjct: 120 MDRLDLDEDMETLMARFLNGLNKEI----ADKVDLQPYFDIEEMLHLAIKVEKHLSTKRA 179

Query: 65  RYTKSKSSTNLNS 78
           RYT SK S++LNS
Sbjct: 180 RYTSSKPSSSLNS 188

[Close]

BLAST of PI0001916.1 vs. NCBI nr
Match: XP_023530046.1 (uncharacterized protein LOC111792716 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-05
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 5   LEEMTIDEDEEATMNRFYNELNEKIVEMLVDHEEIQPCENLEEMVHIAIKIEQLLQRKPS 64
           ++ + +DED EA M RF N LN +I     D  ++QP  N+EE++HIAIKIE+ +QR+  
Sbjct: 26  MDRLDLDEDMEALMARFLNGLNTEI----ADKTDLQPYSNIEELLHIAIKIERQIQRRSQ 85

Query: 65  RYTKSKSSTNLNSLVEKVSLPTKFEH 91
           RY+ SK+  N  S  +K S    ++H
Sbjct: 86  RYS-SKTFPNSTSTWKKDSKNIDYKH 106

[Close]

BLAST of PI0001916.1 vs. NCBI nr
Match: XP_023520835.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-05
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 5   LEEMTIDEDEEATMNRFYNELNEKIVEMLVDHEEIQPCENLEEMVHIAIKIEQLLQRKPS 64
           ++ + +DED EA M RF N LN +I     D  ++QP  N+EE++HIAIKIE+ +QR+  
Sbjct: 225 MDRLDLDEDMEALMARFLNGLNTEI----ADKTDLQPYSNIEELLHIAIKIERQIQRRSQ 284

Query: 65  RYTKSKSSTNLNSLVEKVSLPTKFEH 91
           RY+ SK+  N  S  +K S    ++H
Sbjct: 285 RYS-SKTFPNSTSTWKKDSKNIDYKH 305

[Close]

BLAST of PI0001916.1 vs. NCBI nr
Match: XP_023553652.1 (uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-05
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 5   LEEMTIDEDEEATMNRFYNELNEKIVEMLVDHEEIQPCENLEEMVHIAIKIEQLLQRKPS 64
           ++ + +DED EA M RF N LN +I     D  ++QP  N+EE++HIAIKIE+ +QR+  
Sbjct: 225 MDRLDLDEDMEALMARFLNGLNTEI----ADKTDLQPYSNIEELLHIAIKIERQIQRRSQ 284

Query: 65  RYTKSKSSTNLNSLVEKVSLPTKFEH 91
           RY+ SK+  N  S  +K S    ++H
Sbjct: 285 RYS-SKTFPNSTSTWKKDSKNIDYKH 305

The following BLAST results are available for this feature:

BLAST of PI0001916.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001916.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UE26	6.3e-10	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1G2Q3	2.1e-05	41.86	uncharacterized protein LOC111450286 OS=Cucurbita moschata OX=3662 GN=LOC1114502...	[more]
A0A6J1EVV9	2.1e-05	41.86	uncharacterized protein LOC111436463 OS=Cucurbita moschata OX=3662 GN=LOC1114364...	[more]
A0A6J1EQJ1	2.7e-05	41.86	uncharacterized protein LOC111436530 OS=Cucurbita moschata OX=3662 GN=LOC1114365...	[more]
A0A6J1I8S0	6.1e-05	40.70	uncharacterized protein LOC111472489 OS=Cucurbita maxima OX=3661 GN=LOC111472489...	[more]

BLAST of PI0001916.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051791.1	1.3e-09	66.67	hypothetical protein E6C27_scaffold60G001990 [Cucumis melo var. makuwa]	[more]
XP_038887118.1	1.9e-05	45.21	uncharacterized protein K02A2.6-like [Benincasa hispida]	[more]
XP_023530046.1	3.3e-05	41.86	uncharacterized protein LOC111792716 [Cucurbita pepo subsp. pepo]	[more]
XP_023520835.1	3.3e-05	41.86	LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp....	[more]
XP_023553652.1	3.3e-05	41.86	uncharacterized protein LOC111811140 [Cucurbita pepo subsp. pepo]	[more]

BLAST of PI0001916.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0001916	PI0001916	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0001916.1-exon	PI0001916.1-exon-chr10:10019242..10019592	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0001916.1-cds	PI0001916.1-cds-chr10:10019242..10019592	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0001916.1	PI0001916.1-protein	polypeptide