PI0001260.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0001260.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr02: 15273993 .. 15274496 (+)
Sequence length	504
RNA-Seq Expression	PI0001260.1
Synteny	PI0001260.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCTCAATTATAGCACTGTTTAAAAATGAAAAATTAACCGCTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCATCTTAATGGAGGAATGTCCTCCTTTCCCTGTTCGAAATGCATCCCAGACCGTCAGGAATGCATATGACGGCTGGACAAAGGCCAATGAAAAGACCCGAGTCTACATCTTGGCCAGTATGTCCAACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATAAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTCTAA

mRNA sequence

ATGTCTTCCTCAATTATAGCACTGTTTAAAAATGAAAAATTAACCGCTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCATCTTAATGGAGGAATGTCCTCCTTTCCCTGTTCGAAATGCATCCCAGACCGTCAGGAATGCATATGACGGCTGGACAAAGGCCAATGAAAAGACCCGAGTCTACATCTTGGCCAGTATGTCCAACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATAAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTCTAA

Coding sequence (CDS)

ATGTCTTCCTCAATTATAGCACTGTTTAAAAATGAAAAATTAACCGCTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCATCTTAATGGAGGAATGTCCTCCTTTCCCTGTTCGAAATGCATCCCAGACCGTCAGGAATGCATATGACGGCTGGACAAAGGCCAATGAAAAGACCCGAGTCTACATCTTGGCCAGTATGTCCAACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATAAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTCTAA

Protein sequence

MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL

Homology

[Close]

BLAST of PI0001260.1 vs. ExPASy TrEMBL
Match: A0A5D3D0D9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 8.9e-66
Identity = 128/167 (76.65%), Postives = 150/167 (89.82%), Query Frame = 0


Query: 1   MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
           MSSSIIAL K ++LT +NYATWKS LNMILVI DLRF+LMEECPPFP +NASQ+V++AYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
            WTKAN+K  +Y+LAS+S++LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
           R+KEGQSVREHVL M+V FNVAE N A+ DE+SQVS+IL+SL KSFL
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFL 167

[Close]

BLAST of PI0001260.1 vs. ExPASy TrEMBL
Match: A0A5A7VA67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00110 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 8.9e-66
Identity = 128/167 (76.65%), Postives = 150/167 (89.82%), Query Frame = 0


Query: 1   MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
           MSSSIIAL K ++LT +NYATWKS LNMILVI DLRF+LMEECPPFP +NASQ+V++AYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
            WTKAN+K  +Y+LAS+S++LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
           R+KEGQSVREHVL M+V FNVAE N A+ DE+SQVS+IL+SL KSFL
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFL 167

[Close]

BLAST of PI0001260.1 vs. ExPASy TrEMBL
Match: A0A5D3DQJ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00330 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 3.0e-61
Identity = 122/167 (73.05%), Postives = 142/167 (85.03%), Query Frame = 0


Query: 1   MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
           MSSSIIAL K ++LT  NY TWKS LNMILVI DLR ILME+CPPFP +NASQ+V++AYD
Sbjct: 1   MSSSIIALLKKDQLTGKNYVTWKSKLNMILVIADLRVILMEDCPPFPSQNASQSVKDAYD 60

Query: 61  GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
            WTK N+K R+YIL SM ++LSKKHE MVTARQIMDS++EMFGQPSIQI+ EAIKYVYN 
Sbjct: 61  CWTKTNDKARLYILVSMFDILSKKHEIMVTARQIMDSIREMFGQPSIQIKQEAIKYVYNV 120

Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
            +KE QSVREHVLDM+V FN+AE N  V DE+SQVS+IL+SL KSFL
Sbjct: 121 CMKEDQSVREHVLDMIVNFNIAEMNRVVFDEKSQVSYILKSLSKSFL 167

[Close]

BLAST of PI0001260.1 vs. ExPASy TrEMBL
Match: A0A6J1DWL0 (uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024734 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 8.6e-61
Identity = 118/167 (70.66%), Postives = 141/167 (84.43%), Query Frame = 0


Query: 1   MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
           MS+SIIAL   +KL  +NY  WKSNLN ILVIDDLRF+L E+CP  PV NA+  VRNAYD
Sbjct: 1   MSASIIALLAAQKLNGENYRQWKSNLNTILVIDDLRFVLQEDCPQAPVSNATVAVRNAYD 60

Query: 61  GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
            W K+N+K +VYILAS+S+VL+KKHE  VT ++IMDSLQ MFGQPS+Q RHEA+K+VYN+
Sbjct: 61  RWIKSNDKAKVYILASISDVLAKKHEDTVTTKEIMDSLQSMFGQPSLQARHEALKFVYNS 120

Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
           R+KEG SVREHVL++MV FNVAE+NG VIDEQSQ SFILESLPK+FL
Sbjct: 121 RMKEGSSVREHVLNLMVHFNVAESNGIVIDEQSQASFILESLPKNFL 167

[Close]

BLAST of PI0001260.1 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.7e-59
Identity = 113/167 (67.66%), Postives = 140/167 (83.83%), Query Frame = 0


Query: 1   MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
           M+S+ + +   +KL  +NYA+WK+ +N +L+IDDLRF+L+EECP  P  NA++TVR  Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
            W KANEK R YILAS+S VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
           R+ EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFL
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFL 167

[Close]

BLAST of PI0001260.1 vs. NCBI nr
Match: KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 259.6 bits (662), Expect = 1.8e-65
Identity = 128/167 (76.65%), Postives = 150/167 (89.82%), Query Frame = 0


Query: 1   MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
           MSSSIIAL K ++LT +NYATWKS LNMILVI DLRF+LMEECPPFP +NASQ+V++AYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
            WTKAN+K  +Y+LAS+S++LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
           R+KEGQSVREHVL M+V FNVAE N A+ DE+SQVS+IL+SL KSFL
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFL 167

[Close]

BLAST of PI0001260.1 vs. NCBI nr
Match: TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 259.6 bits (662), Expect = 1.8e-65
Identity = 128/167 (76.65%), Postives = 150/167 (89.82%), Query Frame = 0


Query: 1   MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
           MSSSIIAL K ++LT +NYATWKS LNMILVI DLRF+LMEECPPFP +NASQ+V++AYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
            WTKAN+K  +Y+LAS+S++LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
           R+KEGQSVREHVL M+V FNVAE N A+ DE+SQVS+IL+SL KSFL
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFL 167

[Close]

BLAST of PI0001260.1 vs. NCBI nr
Match: KAA0040193.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK25936.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 244.6 bits (623), Expect = 6.1e-61
Identity = 122/167 (73.05%), Postives = 142/167 (85.03%), Query Frame = 0


Query: 1   MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
           MSSSIIAL K ++LT  NY TWKS LNMILVI DLR ILME+CPPFP +NASQ+V++AYD
Sbjct: 1   MSSSIIALLKKDQLTGKNYVTWKSKLNMILVIADLRVILMEDCPPFPSQNASQSVKDAYD 60

Query: 61  GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
            WTK N+K R+YIL SM ++LSKKHE MVTARQIMDS++EMFGQPSIQI+ EAIKYVYN 
Sbjct: 61  CWTKTNDKARLYILVSMFDILSKKHEIMVTARQIMDSIREMFGQPSIQIKQEAIKYVYNV 120

Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
            +KE QSVREHVLDM+V FN+AE N  V DE+SQVS+IL+SL KSFL
Sbjct: 121 CMKEDQSVREHVLDMIVNFNIAEMNRVVFDEKSQVSYILKSLSKSFL 167

[Close]

BLAST of PI0001260.1 vs. NCBI nr
Match: XP_022158197.1 (uncharacterized protein LOC111024734 [Momordica charantia])

HSP 1 Score: 243.0 bits (619), Expect = 1.8e-60
Identity = 118/167 (70.66%), Postives = 141/167 (84.43%), Query Frame = 0


Query: 1   MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
           MS+SIIAL   +KL  +NY  WKSNLN ILVIDDLRF+L E+CP  PV NA+  VRNAYD
Sbjct: 1   MSASIIALLAAQKLNGENYRQWKSNLNTILVIDDLRFVLQEDCPQAPVSNATVAVRNAYD 60

Query: 61  GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
            W K+N+K +VYILAS+S+VL+KKHE  VT ++IMDSLQ MFGQPS+Q RHEA+K+VYN+
Sbjct: 61  RWIKSNDKAKVYILASISDVLAKKHEDTVTTKEIMDSLQSMFGQPSLQARHEALKFVYNS 120

Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
           R+KEG SVREHVL++MV FNVAE+NG VIDEQSQ SFILESLPK+FL
Sbjct: 121 RMKEGSSVREHVLNLMVHFNVAESNGIVIDEQSQASFILESLPKNFL 167

[Close]

BLAST of PI0001260.1 vs. NCBI nr
Match: XP_038882358.1 (uncharacterized protein LOC120073622 [Benincasa hispida])

HSP 1 Score: 238.4 bits (607), Expect = 4.4e-59
Identity = 114/167 (68.26%), Postives = 139/167 (83.23%), Query Frame = 0


Query: 1   MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
           M+SSII L  +EKL  DNY+ WKSNLN ILV+DDLRF+L EECP  P  NA++TVR AYD
Sbjct: 1   MNSSIIQLLTSEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPTSNANRTVREAYD 60

Query: 61  GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
            W KANEK R+YILASMS+VL+KKHES+ TA++I+DSL+E+FGQPS  +RHEAIK++Y  
Sbjct: 61  RWVKANEKARIYILASMSDVLAKKHESLATAKEIIDSLRELFGQPSWSLRHEAIKHIYTK 120

Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
           R+KEG SVREHVLDMM+ FN+AE NG  IDE +Q SFIL+SLPKSF+
Sbjct: 121 RMKEGTSVREHVLDMMMYFNIAEANGGPIDEANQDSFILQSLPKSFI 167

The following BLAST results are available for this feature:

BLAST of PI0001260.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001260.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0D9	8.9e-66	76.65	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210...	[more]
A0A5A7VA67	8.9e-66	76.65	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0011...	[more]
A0A5D3DQJ2	3.0e-61	73.05	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G0033...	[more]
A0A6J1DWL0	8.6e-61	70.66	uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5A7SMH8	4.7e-59	67.66	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]

BLAST of PI0001260.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063887.1	1.8e-65	76.65	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15919.1	1.8e-65	76.65	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0040193.1	6.1e-61	73.05	gag/pol protein [Cucumis melo var. makuwa] >TYK25936.1 gag/pol protein [Cucumis ...	[more]
XP_022158197.1	1.8e-60	70.66	uncharacterized protein LOC111024734 [Momordica charantia]	[more]
XP_038882358.1	4.4e-59	68.26	uncharacterized protein LOC120073622 [Benincasa hispida]	[more]

BLAST of PI0001260.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 62..166 e-value: 2.4E-14 score: 53.3
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 18..166
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 18..166

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0001260	PI0001260	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0001260.1-exon	PI0001260.1-exon-chr02:15273993..15274496	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0001260.1-cds	PI0001260.1-cds-chr02:15273993..15274496	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0001260.1	PI0001260.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding