Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCCTCAATTATAGCACTGTTTAAAAATGAAAAATTAACCGCTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCATCTTAATGGAGGAATGTCCTCCTTTCCCTGTTCGAAATGCATCCCAGACCGTCAGGAATGCATATGACGGCTGGACAAAGGCCAATGAAAAGACCCGAGTCTACATCTTGGCCAGTATGTCCAACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATAAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTCTAA
mRNA sequence
ATGTCTTCCTCAATTATAGCACTGTTTAAAAATGAAAAATTAACCGCTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCATCTTAATGGAGGAATGTCCTCCTTTCCCTGTTCGAAATGCATCCCAGACCGTCAGGAATGCATATGACGGCTGGACAAAGGCCAATGAAAAGACCCGAGTCTACATCTTGGCCAGTATGTCCAACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATAAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTCTAA
Coding sequence (CDS)
ATGTCTTCCTCAATTATAGCACTGTTTAAAAATGAAAAATTAACCGCTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCATCTTAATGGAGGAATGTCCTCCTTTCCCTGTTCGAAATGCATCCCAGACCGTCAGGAATGCATATGACGGCTGGACAAAGGCCAATGAAAAGACCCGAGTCTACATCTTGGCCAGTATGTCCAACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATAAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTCTAA
Protein sequence
MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYDGWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL
Homology
BLAST of PI0001260 vs. ExPASy TrEMBL
Match:
A0A5D3D0D9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210 PE=4 SV=1)
HSP 1 Score: 259.6 bits (662), Expect = 8.9e-66
Identity = 128/167 (76.65%), Postives = 150/167 (89.82%), Query Frame = 0
Query: 1 MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
MSSSIIAL K ++LT +NYATWKS LNMILVI DLRF+LMEECPPFP +NASQ+V++AYD
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
WTKAN+K +Y+LAS+S++LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
R+KEGQSVREHVL M+V FNVAE N A+ DE+SQVS+IL+SL KSFL
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFL 167
BLAST of PI0001260 vs. ExPASy TrEMBL
Match:
A0A5A7VA67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00110 PE=4 SV=1)
HSP 1 Score: 259.6 bits (662), Expect = 8.9e-66
Identity = 128/167 (76.65%), Postives = 150/167 (89.82%), Query Frame = 0
Query: 1 MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
MSSSIIAL K ++LT +NYATWKS LNMILVI DLRF+LMEECPPFP +NASQ+V++AYD
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
WTKAN+K +Y+LAS+S++LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
R+KEGQSVREHVL M+V FNVAE N A+ DE+SQVS+IL+SL KSFL
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFL 167
BLAST of PI0001260 vs. ExPASy TrEMBL
Match:
A0A5D3DQJ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00330 PE=4 SV=1)
HSP 1 Score: 244.6 bits (623), Expect = 3.0e-61
Identity = 122/167 (73.05%), Postives = 142/167 (85.03%), Query Frame = 0
Query: 1 MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
MSSSIIAL K ++LT NY TWKS LNMILVI DLR ILME+CPPFP +NASQ+V++AYD
Sbjct: 1 MSSSIIALLKKDQLTGKNYVTWKSKLNMILVIADLRVILMEDCPPFPSQNASQSVKDAYD 60
Query: 61 GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
WTK N+K R+YIL SM ++LSKKHE MVTARQIMDS++EMFGQPSIQI+ EAIKYVYN
Sbjct: 61 CWTKTNDKARLYILVSMFDILSKKHEIMVTARQIMDSIREMFGQPSIQIKQEAIKYVYNV 120
Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
+KE QSVREHVLDM+V FN+AE N V DE+SQVS+IL+SL KSFL
Sbjct: 121 CMKEDQSVREHVLDMIVNFNIAEMNRVVFDEKSQVSYILKSLSKSFL 167
BLAST of PI0001260 vs. ExPASy TrEMBL
Match:
A0A6J1DWL0 (uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024734 PE=4 SV=1)
HSP 1 Score: 243.0 bits (619), Expect = 8.6e-61
Identity = 118/167 (70.66%), Postives = 141/167 (84.43%), Query Frame = 0
Query: 1 MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
MS+SIIAL +KL +NY WKSNLN ILVIDDLRF+L E+CP PV NA+ VRNAYD
Sbjct: 1 MSASIIALLAAQKLNGENYRQWKSNLNTILVIDDLRFVLQEDCPQAPVSNATVAVRNAYD 60
Query: 61 GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
W K+N+K +VYILAS+S+VL+KKHE VT ++IMDSLQ MFGQPS+Q RHEA+K+VYN+
Sbjct: 61 RWIKSNDKAKVYILASISDVLAKKHEDTVTTKEIMDSLQSMFGQPSLQARHEALKFVYNS 120
Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
R+KEG SVREHVL++MV FNVAE+NG VIDEQSQ SFILESLPK+FL
Sbjct: 121 RMKEGSSVREHVLNLMVHFNVAESNGIVIDEQSQASFILESLPKNFL 167
BLAST of PI0001260 vs. ExPASy TrEMBL
Match:
A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)
HSP 1 Score: 237.3 bits (604), Expect = 4.7e-59
Identity = 113/167 (67.66%), Postives = 140/167 (83.83%), Query Frame = 0
Query: 1 MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
M+S+ + + +KL +NYA+WK+ +N +L+IDDLRF+L+EECP P NA++TVR Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
W KANEK R YILAS+S VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNA
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
R+ EG SVREHVL+MMV FNVAE NGAVIDE SQVSFILESLP+SFL
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFL 167
BLAST of PI0001260 vs. NCBI nr
Match:
KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 259.6 bits (662), Expect = 1.8e-65
Identity = 128/167 (76.65%), Postives = 150/167 (89.82%), Query Frame = 0
Query: 1 MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
MSSSIIAL K ++LT +NYATWKS LNMILVI DLRF+LMEECPPFP +NASQ+V++AYD
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
WTKAN+K +Y+LAS+S++LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
R+KEGQSVREHVL M+V FNVAE N A+ DE+SQVS+IL+SL KSFL
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFL 167
BLAST of PI0001260 vs. NCBI nr
Match:
TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 259.6 bits (662), Expect = 1.8e-65
Identity = 128/167 (76.65%), Postives = 150/167 (89.82%), Query Frame = 0
Query: 1 MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
MSSSIIAL K ++LT +NYATWKS LNMILVI DLRF+LMEECPPFP +NASQ+V++AYD
Sbjct: 1 MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60
Query: 61 GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
WTKAN+K +Y+LAS+S++LSKKHE MVTARQIMDSL+EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61 HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120
Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
R+KEGQSVREHVL M+V FNVAE N A+ DE+SQVS+IL+SL KSFL
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFL 167
BLAST of PI0001260 vs. NCBI nr
Match:
KAA0040193.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK25936.1 gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 244.6 bits (623), Expect = 6.1e-61
Identity = 122/167 (73.05%), Postives = 142/167 (85.03%), Query Frame = 0
Query: 1 MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
MSSSIIAL K ++LT NY TWKS LNMILVI DLR ILME+CPPFP +NASQ+V++AYD
Sbjct: 1 MSSSIIALLKKDQLTGKNYVTWKSKLNMILVIADLRVILMEDCPPFPSQNASQSVKDAYD 60
Query: 61 GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
WTK N+K R+YIL SM ++LSKKHE MVTARQIMDS++EMFGQPSIQI+ EAIKYVYN
Sbjct: 61 CWTKTNDKARLYILVSMFDILSKKHEIMVTARQIMDSIREMFGQPSIQIKQEAIKYVYNV 120
Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
+KE QSVREHVLDM+V FN+AE N V DE+SQVS+IL+SL KSFL
Sbjct: 121 CMKEDQSVREHVLDMIVNFNIAEMNRVVFDEKSQVSYILKSLSKSFL 167
BLAST of PI0001260 vs. NCBI nr
Match:
XP_022158197.1 (uncharacterized protein LOC111024734 [Momordica charantia])
HSP 1 Score: 243.0 bits (619), Expect = 1.8e-60
Identity = 118/167 (70.66%), Postives = 141/167 (84.43%), Query Frame = 0
Query: 1 MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
MS+SIIAL +KL +NY WKSNLN ILVIDDLRF+L E+CP PV NA+ VRNAYD
Sbjct: 1 MSASIIALLAAQKLNGENYRQWKSNLNTILVIDDLRFVLQEDCPQAPVSNATVAVRNAYD 60
Query: 61 GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
W K+N+K +VYILAS+S+VL+KKHE VT ++IMDSLQ MFGQPS+Q RHEA+K+VYN+
Sbjct: 61 RWIKSNDKAKVYILASISDVLAKKHEDTVTTKEIMDSLQSMFGQPSLQARHEALKFVYNS 120
Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
R+KEG SVREHVL++MV FNVAE+NG VIDEQSQ SFILESLPK+FL
Sbjct: 121 RMKEGSSVREHVLNLMVHFNVAESNGIVIDEQSQASFILESLPKNFL 167
BLAST of PI0001260 vs. NCBI nr
Match:
XP_038882358.1 (uncharacterized protein LOC120073622 [Benincasa hispida])
HSP 1 Score: 238.4 bits (607), Expect = 4.4e-59
Identity = 114/167 (68.26%), Postives = 139/167 (83.23%), Query Frame = 0
Query: 1 MSSSIIALFKNEKLTADNYATWKSNLNMILVIDDLRFILMEECPPFPVRNASQTVRNAYD 60
M+SSII L +EKL DNY+ WKSNLN ILV+DDLRF+L EECP P NA++TVR AYD
Sbjct: 1 MNSSIIQLLTSEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPTSNANRTVREAYD 60
Query: 61 GWTKANEKTRVYILASMSNVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNA 120
W KANEK R+YILASMS+VL+KKHES+ TA++I+DSL+E+FGQPS +RHEAIK++Y
Sbjct: 61 RWVKANEKARIYILASMSDVLAKKHESLATAKEIIDSLRELFGQPSWSLRHEAIKHIYTK 120
Query: 121 RIKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQVSFILESLPKSFL 168
R+KEG SVREHVLDMM+ FN+AE NG IDE +Q SFIL+SLPKSF+
Sbjct: 121 RMKEGTSVREHVLDMMMYFNIAEANGGPIDEANQDSFILQSLPKSFI 167
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3D0D9 | 8.9e-66 | 76.65 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210... | [more] |
| A0A5A7VA67 | 8.9e-66 | 76.65 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0011... | [more] |
| A0A5D3DQJ2 | 3.0e-61 | 73.05 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G0033... | [more] |
| A0A6J1DWL0 | 8.6e-61 | 70.66 | uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
| A0A5A7SMH8 | 4.7e-59 | 67.66 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0063887.1 | 1.8e-65 | 76.65 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| TYK15919.1 | 1.8e-65 | 76.65 | gag/pol protein [Cucumis melo var. makuwa] | [more] |
| KAA0040193.1 | 6.1e-61 | 73.05 | gag/pol protein [Cucumis melo var. makuwa] >TYK25936.1 gag/pol protein [Cucumis ... | [more] |
| XP_022158197.1 | 1.8e-60 | 70.66 | uncharacterized protein LOC111024734 [Momordica charantia] | [more] |
| XP_038882358.1 | 4.4e-59 | 68.26 | uncharacterized protein LOC120073622 [Benincasa hispida] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
