PI0001159.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0001159.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Chromosome-associated kinesin KIF4
Location	chr10: 9412456 .. 9412905 (-)
Sequence length	450
RNA-Seq Expression	PI0001159.1
Synteny	PI0001159.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGATATTAACGTTATGGCTGCTATGTCTGGTTCCACCTCTGCTCTTGTTGCATCTGCCGATGCGACAAAAGCAGCTGCAGCAGGTAATCTTGGCGATGCAGCTGATGCAGTTTATCGTGCTGAAGCTTCTGCTTTGGCTACGAAAGCTGCATCGGAAGTTGTTGTGGCTGCTGCCCCGGGAACCCTTATGGCCAATCTCACCACTATTTCAGCTAATCTTGCAAAAATTTCTGCTTCAGTGGCTTCTATTGCTTTGAACATTGCTTCTGCGGCCACTCCCAATCCTCATCTTAATAATGCTGTGGTTCCTAATGTCAACCAACAACGACAACATAATTGCGGATGTGACGTTTACTGCAAAACTAGAAGATGCGACTGTCGTGGAACTGACAAACGATGCACTGACGATTGTAGTTGCTCCATTCTTCAATGTAGAAATAGATAA

mRNA sequence

ATGGACGATATTAACGTTATGGCTGCTATGTCTGGTTCCACCTCTGCTCTTGTTGCATCTGCCGATGCGACAAAAGCAGCTGCAGCAGGTAATCTTGGCGATGCAGCTGATGCAGTTTATCGTGCTGAAGCTTCTGCTTTGGCTACGAAAGCTGCATCGGAAGTTGTTGTGGCTGCTGCCCCGGGAACCCTTATGGCCAATCTCACCACTATTTCAGCTAATCTTGCAAAAATTTCTGCTTCAGTGGCTTCTATTGCTTTGAACATTGCTTCTGCGGCCACTCCCAATCCTCATCTTAATAATGCTGTGGTTCCTAATGTCAACCAACAACGACAACATAATTGCGGATGTGACGTTTACTGCAAAACTAGAAGATGCGACTGTCGTGGAACTGACAAACGATGCACTGACGATTGTAGTTGCTCCATTCTTCAATGTAGAAATAGATAA

Coding sequence (CDS)

ATGGACGATATTAACGTTATGGCTGCTATGTCTGGTTCCACCTCTGCTCTTGTTGCATCTGCCGATGCGACAAAAGCAGCTGCAGCAGGTAATCTTGGCGATGCAGCTGATGCAGTTTATCGTGCTGAAGCTTCTGCTTTGGCTACGAAAGCTGCATCGGAAGTTGTTGTGGCTGCTGCCCCGGGAACCCTTATGGCCAATCTCACCACTATTTCAGCTAATCTTGCAAAAATTTCTGCTTCAGTGGCTTCTATTGCTTTGAACATTGCTTCTGCGGCCACTCCCAATCCTCATCTTAATAATGCTGTGGTTCCTAATGTCAACCAACAACGACAACATAATTGCGGATGTGACGTTTACTGCAAAACTAGAAGATGCGACTGTCGTGGAACTGACAAACGATGCACTGACGATTGTAGTTGCTCCATTCTTCAATGTAGAAATAGATAA

Protein sequence

MDDINVMAAMSGSTSALVASADATKAAAAGNLGDAADAVYRAEASALATKAASEVVVAAAPGTLMANLTTISANLAKISASVASIALNIASAATPNPHLNNAVVPNVNQQRQHNCGCDVYCKTRRCDCRGTDKRCTDDCSCSILQCRNR

Homology

[Close]

BLAST of PI0001159.1 vs. ExPASy TrEMBL
Match: A0A5D3CTB1 (Chromosome-associated kinesin KIF4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G001100 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.4e-65
Identity = 143/149 (95.97%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MDDINVMAAMSGSTSALVASADATKAAAAGNLGDAADAVYRAEASALATKAASEVVVAAA 60
           M+DINVMAAMSGSTSALVASADATKAAAAGNLGDAADAVYRAEASALATKAASEVVVAAA
Sbjct: 1   MEDINVMAAMSGSTSALVASADATKAAAAGNLGDAADAVYRAEASALATKAASEVVVAAA 60

Query: 61  PGTLMANLTTISANLAKISASVASIALNIASAATPNPHLNNAVVPNVNQQRQHNCGCDVY 120
           PGTLMANLTTISA+LAKISASVASIALNIASA  PNPH++NAVVPNVNQQRQHNCGCDVY
Sbjct: 61  PGTLMANLTTISASLAKISASVASIALNIASAPNPNPHVDNAVVPNVNQQRQHNCGCDVY 120

Query: 121 CKTRRCDCRGTDKRCTDDCSCSILQCRNR 150
           CKTRRCDCRGTDKRCTDDCSCSILQCRNR
Sbjct: 121 CKTRRCDCRGTDKRCTDDCSCSILQCRNR 149

[Close]

BLAST of PI0001159.1 vs. ExPASy TrEMBL
Match: A0A1S3CNA8 (uncharacterized protein LOC103502885 OS=Cucumis melo OX=3656 GN=LOC103502885 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.4e-65
Identity = 143/149 (95.97%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MDDINVMAAMSGSTSALVASADATKAAAAGNLGDAADAVYRAEASALATKAASEVVVAAA 60
           M+DINVMAAMSGSTSALVASADATKAAAAGNLGDAADAVYRAEASALATKAASEVVVAAA
Sbjct: 1   MEDINVMAAMSGSTSALVASADATKAAAAGNLGDAADAVYRAEASALATKAASEVVVAAA 60

Query: 61  PGTLMANLTTISANLAKISASVASIALNIASAATPNPHLNNAVVPNVNQQRQHNCGCDVY 120
           PGTLMANLTTISA+LAKISASVASIALNIASA  PNPH++NAVVPNVNQQRQHNCGCDVY
Sbjct: 61  PGTLMANLTTISASLAKISASVASIALNIASAPNPNPHVDNAVVPNVNQQRQHNCGCDVY 120

Query: 121 CKTRRCDCRGTDKRCTDDCSCSILQCRNR 150
           CKTRRCDCRGTDKRCTDDCSCSILQCRNR
Sbjct: 121 CKTRRCDCRGTDKRCTDDCSCSILQCRNR 149

[Close]

BLAST of PI0001159.1 vs. NCBI nr
Match: XP_008465229.1 (PREDICTED: uncharacterized protein LOC103502885 [Cucumis melo] >KAA0065697.1 Chromosome-associated kinesin KIF4 [Cucumis melo var. makuwa] >TYK14448.1 Chromosome-associated kinesin KIF4 [Cucumis melo var. makuwa])

HSP 1 Score: 258.8 bits (660), Expect = 2.8e-65
Identity = 143/149 (95.97%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MDDINVMAAMSGSTSALVASADATKAAAAGNLGDAADAVYRAEASALATKAASEVVVAAA 60
           M+DINVMAAMSGSTSALVASADATKAAAAGNLGDAADAVYRAEASALATKAASEVVVAAA
Sbjct: 1   MEDINVMAAMSGSTSALVASADATKAAAAGNLGDAADAVYRAEASALATKAASEVVVAAA 60

Query: 61  PGTLMANLTTISANLAKISASVASIALNIASAATPNPHLNNAVVPNVNQQRQHNCGCDVY 120
           PGTLMANLTTISA+LAKISASVASIALNIASA  PNPH++NAVVPNVNQQRQHNCGCDVY
Sbjct: 61  PGTLMANLTTISASLAKISASVASIALNIASAPNPNPHVDNAVVPNVNQQRQHNCGCDVY 120

Query: 121 CKTRRCDCRGTDKRCTDDCSCSILQCRNR 150
           CKTRRCDCRGTDKRCTDDCSCSILQCRNR
Sbjct: 121 CKTRRCDCRGTDKRCTDDCSCSILQCRNR 149

The following BLAST results are available for this feature:

BLAST of PI0001159.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0001159.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CTB1	1.4e-65	95.97	Chromosome-associated kinesin KIF4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3CNA8	1.4e-65	95.97	uncharacterized protein LOC103502885 OS=Cucumis melo OX=3656 GN=LOC103502885 PE=...	[more]

BLAST of PI0001159.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465229.1	2.8e-65	95.97	PREDICTED: uncharacterized protein LOC103502885 [Cucumis melo] >KAA0065697.1 Chr...	[more]

BLAST of PI0001159.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0001159	PI0001159	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0001159.1-exon	PI0001159.1-exon-chr10:9412456..9412905	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0001159.1-cds	PI0001159.1-cds-chr10:9412456..9412905	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0001159.1	PI0001159.1-protein	polypeptide