PI0000604.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0000604.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	CCHC-type domain-containing protein
Location	chr09: 12324762 .. 12325112 (-)
Sequence length	318
RNA-Seq Expression	PI0000604.1
Synteny	PI0000604.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGGAATGCAAAATAATTTGGTGTCAATATCTCAATTGACATCAGCAGGAAACTTTGTCGTGTTTGGACCTAATGATGTCAAGGTGTACCAAGATTTGGAAGTTAGTGGCAAGTTGTTGATGGAAGGACAATGGAAGGATTCCAGCTATGTCATGTTAGCAAAAGATACCTATGTGCATAAGCAAAGGCCCTTAAGAACAGAGTGCGTTGATTCTCATGGTGCACAATGCTATACATGAAGACATGATACAGTTAATAAAACATCATCATGGAAGGCACCCGAATTAGAAAAGACACCTGAGGACGAGGGGTCTTTTGAAGAAGGGTCCAAAGAAGAGATAAGTTAA

mRNA sequence

ATGCTTGGAATGCAAAATAATTTGGTGTCAATATCTCAATTGACATCAGCAGGAAACTTTGTCGTGTTTGGACCTAATGATGTCAAGGTGTACCAAGATTTGGAAGTTAGTGGCAAGTTGTTGATGGAAGGACAATGGAAGGATTCCAGCTATGTCATGTTAGCAAAAGATACCTATGTGCATAAGCAAAGGCCCTTAAGAACAGAGTGCGTTGATTCTCATGTTAATAAAACATCATCATGGAAGGCACCCGAATTAGAAAAGACACCTGAGGACGAGGGGTCTTTTGAAGAAGGGTCCAAAGAAGAGATAAGTTAA

Coding sequence (CDS)

ATGCTTGGAATGCAAAATAATTTGGTGTCAATATCTCAATTGACATCAGCAGGAAACTTTGTCGTGTTTGGACCTAATGATGTCAAGGTGTACCAAGATTTGGAAGTTAGTGGCAAGTTGTTGATGGAAGGACAATGGAAGGATTCCAGCTATGTCATGTTAGCAAAAGATACCTATGTGCATAAGCAAAGGCCCTTAAGAACAGAGTGCGTTGATTCTCATGTTAATAAAACATCATCATGGAAGGCACCCGAATTAGAAAAGACACCTGAGGACGAGGGGTCTTTTGAAGAAGGGTCCAAAGAAGAGATAAGTTAA

Protein sequence

MLGMQNNLVSISQLTSAGNFVVFGPNDVKVYQDLEVSGKLLMEGQWKDSSYVMLAKDTYVHKQRPLRTECVDSHVNKTSSWKAPELEKTPEDEGSFEEGSKEEIS

Homology

[Close]

BLAST of PI0000604.1 vs. ExPASy TrEMBL
Match: A0A0A0K4U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G305380 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.4e-26
Identity = 69/103 (66.99%), Postives = 78/103 (75.73%), Query Frame = 0


Query: 9   VSISQLTSAGNFVVFGPNDVKVYQDLEVSGKLLMEGQWKDSSYVMLAKDTYVHKQRPLRT 68
           V ISQLTSAG FVVFGPN VKVYQDLE SGKLLME Q  DS Y+MLA+D Y+  QR L T
Sbjct: 9   VPISQLTSAGKFVVFGPNGVKVYQDLEASGKLLMERQEMDSIYIMLAEDAYMDMQRHLVT 68

Query: 69  ECVDS------HVNKTSSWKAPELEKTPEDEGSFEEGSKEEIS 106
           EC+DS       +N+  SWKA + EKTP+DE SFEEGSK+EIS
Sbjct: 69  ECIDSTDEQCHTINEALSWKALDSEKTPKDERSFEEGSKDEIS 111

[Close]

BLAST of PI0000604.1 vs. ExPASy TrEMBL
Match: A0A5A7TNQ2 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00830 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.8e-14
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 4   MQNNLVSISQLTSAGNFVVFGPNDVKVYQDLEVSGKLLMEGQWKDSSYVMLAKDTYVHKQ 63
           M+ NLV ISQLTSAGNFVVFGP DVKVY +L+VSG  LMEGQ  DS YVMLA+ TY++K 
Sbjct: 137 MKKNLVPISQLTSAGNFVVFGPKDVKVYHNLKVSGTPLMEGQMMDSIYVMLAETTYMNKT 196

Query: 64  RPLRT 69
           R   T
Sbjct: 197 RKNET 201

[Close]

BLAST of PI0000604.1 vs. ExPASy TrEMBL
Match: A0A5A7TYD2 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001190 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 3   GMQNNLVSISQLTSAGNFVVFGPNDVKVYQDLEVSGKLLMEGQWKDSSYVMLAKDTYVHK 62
           GM+ NLVS+SQLTSAGNFVVFGP+DVKVY +L+VSG  LMEG+  DS YVM A+  YV+K
Sbjct: 213 GMKKNLVSVSQLTSAGNFVVFGPDDVKVYHNLKVSGTPLMEGRRMDSIYVMSAETAYVNK 272

Query: 63  QR 65
            R
Sbjct: 273 TR 274

[Close]

BLAST of PI0000604.1 vs. ExPASy TrEMBL
Match: A0A5A7T1U9 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00800 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 3   GMQNNLVSISQLTSAGNFVVFGPNDVKVYQDLEVSGKLLMEGQWKDSSYVMLAKDTYVHK 62
           GM+ NLVS+SQLTSA NFVVFG +DVKVY +L+VSG  LMEG+  DS YVM AK  YV+K
Sbjct: 348 GMKKNLVSVSQLTSADNFVVFGLDDVKVYHNLKVSGSPLMEGRRMDSIYVMSAKTAYVNK 407

Query: 63  QRPLRT 69
            R   T
Sbjct: 408 MRKNET 413

[Close]

BLAST of PI0000604.1 vs. ExPASy TrEMBL
Match: A0A5A7T2J1 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00560 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-12
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 3   GMQNNLVSISQLTSAGNFVVFGPNDVKVYQDLEVSGKLLMEGQWKDSSYVMLAKDTYVHK 62
           GM+ NLV+ISQLTS GNFVVFGPNDVKVY + +VSG  L+EG+  D  YVM A+  YV+K
Sbjct: 198 GMKKNLVTISQLTSVGNFVVFGPNDVKVYHNFKVSGTPLIEGRRMDFIYVMSAETAYVNK 257

Query: 63  QRPLRTECVD 73
            R  + E VD
Sbjct: 258 TR--KNETVD 265

[Close]

BLAST of PI0000604.1 vs. NCBI nr
Match: KAA0045163.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK23575.1 UBN2_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 7.9e-14
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 4   MQNNLVSISQLTSAGNFVVFGPNDVKVYQDLEVSGKLLMEGQWKDSSYVMLAKDTYVHKQ 63
           M+ NLV ISQLTSAGNFVVFGP DVKVY +L+VSG  LMEGQ  DS YVMLA+ TY++K 
Sbjct: 137 MKKNLVPISQLTSAGNFVVFGPKDVKVYHNLKVSGTPLMEGQMMDSIYVMLAETTYMNKT 196

Query: 64  RPLRT 69
           R   T
Sbjct: 197 RKNET 201

[Close]

BLAST of PI0000604.1 vs. NCBI nr
Match: KAA0046986.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK04797.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-13
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 3   GMQNNLVSISQLTSAGNFVVFGPNDVKVYQDLEVSGKLLMEGQWKDSSYVMLAKDTYVHK 62
           GM+ NLVS+SQLTSAGNFVVFGP+DVKVY +L+VSG  LMEG+  DS YVM A+  YV+K
Sbjct: 213 GMKKNLVSVSQLTSAGNFVVFGPDDVKVYHNLKVSGTPLMEGRRMDSIYVMSAETAYVNK 272

Query: 63  QR 65
            R
Sbjct: 273 TR 274

[Close]

BLAST of PI0000604.1 vs. NCBI nr
Match: KAA0037350.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYJ97557.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 3.3e-12
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 0


Query: 3   GMQNNLVSISQLTSAGNFVVFGPNDVKVYQDLEVSGKLLMEGQWKDSSYVMLAKDTYVHK 62
           GM+ NLVS+SQLTSA NFVVFG +DVKVY +L+VSG  LMEG+  DS YVM AK  YV+K
Sbjct: 348 GMKKNLVSVSQLTSADNFVVFGLDDVKVYHNLKVSGSPLMEGRRMDSIYVMSAKTAYVNK 407

Query: 63  QRPLRT 69
            R   T
Sbjct: 408 MRKNET 413

[Close]

BLAST of PI0000604.1 vs. NCBI nr
Match: KAA0037684.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK10689.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 5.6e-12
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 3   GMQNNLVSISQLTSAGNFVVFGPNDVKVYQDLEVSGKLLMEGQWKDSSYVMLAKDTYVHK 62
           GM+ NLV+ISQLTS GNFVVFGPNDVKVY + +VSG  L+EG+  D  YVM A+  YV+K
Sbjct: 198 GMKKNLVTISQLTSVGNFVVFGPNDVKVYHNFKVSGTPLIEGRRMDFIYVMSAETAYVNK 257

Query: 63  QRPLRTECVD 73
            R  + E VD
Sbjct: 258 TR--KNETVD 265

[Close]

BLAST of PI0000604.1 vs. NCBI nr
Match: KAA0033603.1 (Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-11
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1   MLGMQNNLVSISQLTSAGNFVVFGPNDVKVYQDLEVSGKLLMEGQWKDSSYVMLAKDTYV 60
           +L M+ NLVS+SQLTSA NF+VFG N+VKVY +L+VSG  LMEG+  DS YVM A+ TY+
Sbjct: 96  VLEMKKNLVSVSQLTSASNFIVFGSNNVKVYHNLKVSGTPLMEGRRMDSIYVMSAETTYI 155

Query: 61  HKQRPLRT 69
           +K +   T
Sbjct: 156 NKMQKNET 163

The following BLAST results are available for this feature:

BLAST of PI0000604.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000604.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4U2	7.4e-26	66.99	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G305380 PE=4 SV=1	[more]
A0A5A7TNQ2	3.8e-14	69.23	UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7TYD2	1.1e-13	69.35	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7T1U9	1.6e-12	65.15	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7T2J1	2.7e-12	61.43	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of PI0000604.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045163.1	7.9e-14	69.23	UBN2_3 domain-containing protein [Cucumis melo var. makuwa] >TYK23575.1 UBN2_3 d...	[more]
KAA0046986.1	2.3e-13	69.35	Integrase, catalytic core [Cucumis melo var. makuwa] >TYK04797.1 Integrase, cata...	[more]
KAA0037350.1	3.3e-12	65.15	Integrase, catalytic core [Cucumis melo var. makuwa] >TYJ97557.1 Integrase, cata...	[more]
KAA0037684.1	5.6e-12	61.43	Integrase, catalytic core [Cucumis melo var. makuwa] >TYK10689.1 Integrase, cata...	[more]
KAA0033603.1	1.6e-11	58.82	Integrase, catalytic core [Cucumis melo var. makuwa]	[more]

BLAST of PI0000604.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..105

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0000604	PI0000604	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0000604.1-exon	PI0000604.1-exon-chr09:12324762..12324856	exon
PI0000604.1-exon	PI0000604.1-exon-chr09:12324890..12325112	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0000604.1-cds	PI0000604.1-cds-chr09:12324762..12324856	CDS
PI0000604.1-cds	PI0000604.1-cds-chr09:12324890..12325112	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0000604.1	PI0000604.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding