Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTGGATGGTGAGCTCTGGATACCGCACAGAAGACCTGCAAAACAAAGTAAGCAATCCGATGCCAAAGTCAGTAAGTGTCCAAATCAACTCGAGAGAGAGAATTGGGTTGCTCGAGTACCTCAAAATGAAGCGGAGTGGTTCTATTTATAGGTAGAGTCCCCGACAACATTCCCAGCAAAGCCTCAACGGTTCTTTAAAGTAATTGTGAAGTGCAGCGTGATGTCATAAAGTCTGTTGGAGAATTGGCTGAGTTGAAGTGGTCCAAGTAACTTATTTGGTAAGCTCAGTCGTTTCAGGAGGTCGGCTCGACATGAGAATTCATGACCAAAGCGAGTAAACATACTTCTTAGTAAGGGGAGACACATGTACTTCTGAACATGCAATCATAGCACGCCATGTGTGAGCTGAGAAATCATCTCCAACAAGTACTAAGATTGAAGTTCACGAATAAGGATCTTGTTTGAAGAAATGAAAAGTGATATGATCACTATTCAAAATGATATGTTTGCCTCTTAAAATGATACTAAGATTGAAATTTACGAATAAGGATCTTGTTTGAAGAATGAAAAGTGATATGAAAACACTAAGTGAATTGAAATTAGGAACTCTTTGATATGTGAACCCCCTCTTCTATATAAAGAGTCTGCAGTTATATTGGTAAAATAGATGAGAAATTCAATGTCTTATGGTCAGTATGGATTTTGTACTCATACTAATATTGTGTTATGGTATCATAGCTATAGCTTTACAGCAATGGCTTCCTTAAGCTCAACACCAATTAACGATGGAGTCACATCCCTTCTAGGGCAGAGTAATCTAGTGACAAACATGAGAAATCGTATTCTAGTGATTAAACTCACTGACAACAATTACTTGTTGTGGAAATTTCAAGTATTAACAACCATTCAAGGGCTTTGCCTACTGAAATACATCAAAGGAGCTGAAGAACCAACATCACAATTTCTCAACCAGACAACTCAAGAATGCTCCAGTTCTGAAATAAATCCAGCATACGATTCTTGGGTTCAACAAGACAAAATACTCTCATCATGGCTCTTAGGATCTATGACAGAAGATATTCTTGTGCAAATGGTTGAATGA
mRNA sequence
ATGAGCTGGATGGTGAGCTCTGGATACCGCACAGAAGACCTGCAAAACAAAGTAAGCAATCCGATGCCAAAGTCAGTAAGTGTCCAAATCAACTCGAGAGAGAGAATTGGGTTGCTCGAGTACCTCAAAATGAAGCGGAGTGGTTCTATTTATAGCTATAGCTTTACAGCAATGGCTTCCTTAAGCTCAACACCAATTAACGATGGAGTCACATCCCTTCTAGGGCAGAGTAATCTAGTGACAAACATGAGAAATCGTATTCTAGTGATTAAACTCACTGACAACAATTACTTGTTGTGGAAATTTCAAGTATTAACAACCATTCAAGGGCTTTGCCTACTGAAATACATCAAAGGAGCTGAAGAACCAACATCACAATTTCTCAACCAGACAACTCAAGAATGCTCCAGTTCTGAAATAAATCCAGCATACGATTCTTGGGTTCAACAAGACAAAATACTCTCATCATGGCTCTTAGGATCTATGACAGAAGATATTCTTGTGCAAATGGTTGAATGA
Coding sequence (CDS)
ATGAGCTGGATGGTGAGCTCTGGATACCGCACAGAAGACCTGCAAAACAAAGTAAGCAATCCGATGCCAAAGTCAGTAAGTGTCCAAATCAACTCGAGAGAGAGAATTGGGTTGCTCGAGTACCTCAAAATGAAGCGGAGTGGTTCTATTTATAGCTATAGCTTTACAGCAATGGCTTCCTTAAGCTCAACACCAATTAACGATGGAGTCACATCCCTTCTAGGGCAGAGTAATCTAGTGACAAACATGAGAAATCGTATTCTAGTGATTAAACTCACTGACAACAATTACTTGTTGTGGAAATTTCAAGTATTAACAACCATTCAAGGGCTTTGCCTACTGAAATACATCAAAGGAGCTGAAGAACCAACATCACAATTTCTCAACCAGACAACTCAAGAATGCTCCAGTTCTGAAATAAATCCAGCATACGATTCTTGGGTTCAACAAGACAAAATACTCTCATCATGGCTCTTAGGATCTATGACAGAAGATATTCTTGTGCAAATGGTTGAATGA
Protein sequence
MSWMVSSGYRTEDLQNKVSNPMPKSVSVQINSRERIGLLEYLKMKRSGSIYSYSFTAMASLSSTPINDGVTSLLGQSNLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCLLKYIKGAEEPTSQFLNQTTQECSSSEINPAYDSWVQQDKILSSWLLGSMTEDILVQMVE
Homology
BLAST of Moc11g14090.1 vs. NCBI nr
Match:
XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])
HSP 1 Score: 97.1 bits (240), Expect = 1.6e-16
Identity = 53/117 (45.30%), Postives = 77/117 (65.81%), Query Frame = 0
Query: 58 MASLSSTPINDGVTSLLGQSNLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCLLKYI 117
MASLSS +D + Q++ N +++ +++L D+N LLWKFQ+ T +QG L YI
Sbjct: 1 MASLSSIRNSDAARII--QASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYI 60
Query: 118 KGAEEPTSQFLNQTTQECSSSEI--NPAYDSWVQQDKILSSWLLGSMTEDILVQMVE 173
E+ +QF+ T E SSS + NPAY W++QDK++S+WLLGSM EDIL QM++
Sbjct: 61 DSNEDTPAQFVQTTEDESSSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLD 115
BLAST of Moc11g14090.1 vs. NCBI nr
Match:
XP_022159146.1 (uncharacterized protein LOC111025572 [Momordica charantia])
HSP 1 Score: 84.7 bits (208), Expect = 8.3e-13
Identity = 41/102 (40.20%), Postives = 67/102 (65.69%), Query Frame = 0
Query: 71 TSLLGQSNLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCLLKYIKGAEEPTSQFLNQ 130
++++ Q++ + N N+I IKL D N+LLW+ Q+ T +QG L K+I + S+F+
Sbjct: 10 STVVNQNSTIVNPGNKISTIKLNDENFLLWRLQITTALQGHGLGKFIDPEAKIPSEFVQS 69
Query: 131 TTQECSSSEINPAYDSWVQQDKILSSWLLGSMTEDILVQMVE 173
+ S NP + +W +QDK+++SWLLGSM+E+IL QM+E
Sbjct: 70 ADESSSVPSPNPEFINWKRQDKLITSWLLGSMSEEILSQMLE 111
BLAST of Moc11g14090.1 vs. NCBI nr
Match:
KAA0067213.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])
HSP 1 Score: 84.3 bits (207), Expect = 1.1e-12
Identity = 44/120 (36.67%), Postives = 75/120 (62.50%), Query Frame = 0
Query: 54 SFTAMASLSSTPINDGVTSLLGQSNLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCL 113
S +++ + +T + + + G S N+I ++KL+D+N+LLWKFQ+LT ++ L
Sbjct: 3 STSSLLGVENTEASSPINQIFGSS-------NKISLVKLSDDNFLLWKFQILTALEAYDL 62
Query: 114 LKYIKGAEEPTSQFLNQTTQECSSS--EINPAYDSWVQQDKILSSWLLGSMTEDILVQMV 172
+++ EP S++L T +S+ NP Y W +QD+++SSWLLGSM+E+IL QM+
Sbjct: 63 ENFLESESEPPSKYLISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQML 115
BLAST of Moc11g14090.1 vs. NCBI nr
Match:
TYK18917.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])
HSP 1 Score: 84.3 bits (207), Expect = 1.1e-12
Identity = 44/120 (36.67%), Postives = 75/120 (62.50%), Query Frame = 0
Query: 54 SFTAMASLSSTPINDGVTSLLGQSNLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCL 113
S +++ + +T + + + G S N+I ++KL+D+N+LLWKFQ+LT ++ L
Sbjct: 3 STSSLLGVENTEASSPINQIFGSS-------NKISLVKLSDDNFLLWKFQILTALEAYDL 62
Query: 114 LKYIKGAEEPTSQFLNQTTQECSSS--EINPAYDSWVQQDKILSSWLLGSMTEDILVQMV 172
+++ EP S++L T +S+ NP Y W +QD+++SSWLLGSM+E+IL QM+
Sbjct: 63 ENFLESESEPPSKYLISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQML 115
BLAST of Moc11g14090.1 vs. NCBI nr
Match:
KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 82.4 bits (202), Expect = 4.1e-12
Identity = 47/115 (40.87%), Postives = 72/115 (62.61%), Query Frame = 0
Query: 61 LSSTPINDGVTSLLGQS--NLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCLLKYIK 120
+SST GV + S N + N+I ++KL D+ +LLWKFQ+LT ++ L +++
Sbjct: 1 MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLE 60
Query: 121 GAEEPTSQFLNQTTQECSSS--EINPAYDSWVQQDKILSSWLLGSMTEDILVQMV 172
EP S++L T +S+ NPAY W +QD+++SSWLLGSM+E+IL QM+
Sbjct: 61 SESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQML 115
BLAST of Moc11g14090.1 vs. ExPASy TrEMBL
Match:
A0A6J1DLT9 (uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021757 PE=4 SV=1)
HSP 1 Score: 97.1 bits (240), Expect = 7.9e-17
Identity = 53/117 (45.30%), Postives = 77/117 (65.81%), Query Frame = 0
Query: 58 MASLSSTPINDGVTSLLGQSNLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCLLKYI 117
MASLSS +D + Q++ N +++ +++L D+N LLWKFQ+ T +QG L YI
Sbjct: 1 MASLSSIRNSDAARII--QASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYI 60
Query: 118 KGAEEPTSQFLNQTTQECSSSEI--NPAYDSWVQQDKILSSWLLGSMTEDILVQMVE 173
E+ +QF+ T E SSS + NPAY W++QDK++S+WLLGSM EDIL QM++
Sbjct: 61 DSNEDTPAQFVQTTEDESSSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLD 115
BLAST of Moc11g14090.1 vs. ExPASy TrEMBL
Match:
A0A6J1E314 (uncharacterized protein LOC111025572 OS=Momordica charantia OX=3673 GN=LOC111025572 PE=4 SV=1)
HSP 1 Score: 84.7 bits (208), Expect = 4.0e-13
Identity = 41/102 (40.20%), Postives = 67/102 (65.69%), Query Frame = 0
Query: 71 TSLLGQSNLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCLLKYIKGAEEPTSQFLNQ 130
++++ Q++ + N N+I IKL D N+LLW+ Q+ T +QG L K+I + S+F+
Sbjct: 10 STVVNQNSTIVNPGNKISTIKLNDENFLLWRLQITTALQGHGLGKFIDPEAKIPSEFVQS 69
Query: 131 TTQECSSSEINPAYDSWVQQDKILSSWLLGSMTEDILVQMVE 173
+ S NP + +W +QDK+++SWLLGSM+E+IL QM+E
Sbjct: 70 ADESSSVPSPNPEFINWKRQDKLITSWLLGSMSEEILSQMLE 111
BLAST of Moc11g14090.1 vs. ExPASy TrEMBL
Match:
A0A5D3D5T2 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001330 PE=4 SV=1)
HSP 1 Score: 84.3 bits (207), Expect = 5.3e-13
Identity = 44/120 (36.67%), Postives = 75/120 (62.50%), Query Frame = 0
Query: 54 SFTAMASLSSTPINDGVTSLLGQSNLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCL 113
S +++ + +T + + + G S N+I ++KL+D+N+LLWKFQ+LT ++ L
Sbjct: 3 STSSLLGVENTEASSPINQIFGSS-------NKISLVKLSDDNFLLWKFQILTALEAYDL 62
Query: 114 LKYIKGAEEPTSQFLNQTTQECSSS--EINPAYDSWVQQDKILSSWLLGSMTEDILVQMV 172
+++ EP S++L T +S+ NP Y W +QD+++SSWLLGSM+E+IL QM+
Sbjct: 63 ENFLESESEPPSKYLISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQML 115
BLAST of Moc11g14090.1 vs. ExPASy TrEMBL
Match:
A0A5A7VGJ8 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00160 PE=4 SV=1)
HSP 1 Score: 84.3 bits (207), Expect = 5.3e-13
Identity = 44/120 (36.67%), Postives = 75/120 (62.50%), Query Frame = 0
Query: 54 SFTAMASLSSTPINDGVTSLLGQSNLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCL 113
S +++ + +T + + + G S N+I ++KL+D+N+LLWKFQ+LT ++ L
Sbjct: 3 STSSLLGVENTEASSPINQIFGSS-------NKISLVKLSDDNFLLWKFQILTALEAYDL 62
Query: 114 LKYIKGAEEPTSQFLNQTTQECSSS--EINPAYDSWVQQDKILSSWLLGSMTEDILVQMV 172
+++ EP S++L T +S+ NP Y W +QD+++SSWLLGSM+E+IL QM+
Sbjct: 63 ENFLESESEPPSKYLISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQML 115
BLAST of Moc11g14090.1 vs. ExPASy TrEMBL
Match:
A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)
HSP 1 Score: 82.4 bits (202), Expect = 2.0e-12
Identity = 47/115 (40.87%), Postives = 72/115 (62.61%), Query Frame = 0
Query: 61 LSSTPINDGVTSLLGQS--NLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCLLKYIK 120
+SST GV + S N + N+I ++KL D+ +LLWKFQ+LT ++ L +++
Sbjct: 1 MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLE 60
Query: 121 GAEEPTSQFLNQTTQECSSS--EINPAYDSWVQQDKILSSWLLGSMTEDILVQMV 172
EP S++L T +S+ NPAY W +QD+++SSWLLGSM+E+IL QM+
Sbjct: 61 SESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQML 115
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022154487.1 | 1.6e-16 | 45.30 | uncharacterized protein LOC111021757 [Momordica charantia] | [more] |
XP_022159146.1 | 8.3e-13 | 40.20 | uncharacterized protein LOC111025572 [Momordica charantia] | [more] |
KAA0067213.1 | 1.1e-12 | 36.67 | keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa] | [more] |
TYK18917.1 | 1.1e-12 | 36.67 | keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa] | [more] |
KAA0048297.1 | 4.1e-12 | 40.87 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DLT9 | 7.9e-17 | 45.30 | uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021... | [more] |
A0A6J1E314 | 4.0e-13 | 40.20 | uncharacterized protein LOC111025572 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
A0A5D3D5T2 | 5.3e-13 | 36.67 | Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5A7VGJ8 | 5.3e-13 | 36.67 | Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
A0A5A7U233 | 2.0e-12 | 40.87 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
Match Name | E-value | Identity | Description | |