Moc11g14090.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g14090.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Keratin, type II cytoskeletal 1-like
Location	chr11: 10460665 .. 10461770 (+)
Sequence length	519
RNA-Seq Expression	Moc11g14090.1
Synteny	Moc11g14090.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTGGATGGTGAGCTCTGGATACCGCACAGAAGACCTGCAAAACAAAGTAAGCAATCCGATGCCAAAGTCAGTAAGTGTCCAAATCAACTCGAGAGAGAGAATTGGGTTGCTCGAGTACCTCAAAATGAAGCGGAGTGGTTCTATTTATAGGTAGAGTCCCCGACAACATTCCCAGCAAAGCCTCAACGGTTCTTTAAAGTAATTGTGAAGTGCAGCGTGATGTCATAAAGTCTGTTGGAGAATTGGCTGAGTTGAAGTGGTCCAAGTAACTTATTTGGTAAGCTCAGTCGTTTCAGGAGGTCGGCTCGACATGAGAATTCATGACCAAAGCGAGTAAACATACTTCTTAGTAAGGGGAGACACATGTACTTCTGAACATGCAATCATAGCACGCCATGTGTGAGCTGAGAAATCATCTCCAACAAGTACTAAGATTGAAGTTCACGAATAAGGATCTTGTTTGAAGAAATGAAAAGTGATATGATCACTATTCAAAATGATATGTTTGCCTCTTAAAATGATACTAAGATTGAAATTTACGAATAAGGATCTTGTTTGAAGAATGAAAAGTGATATGAAAACACTAAGTGAATTGAAATTAGGAACTCTTTGATATGTGAACCCCCTCTTCTATATAAAGAGTCTGCAGTTATATTGGTAAAATAGATGAGAAATTCAATGTCTTATGGTCAGTATGGATTTTGTACTCATACTAATATTGTGTTATGGTATCATAGCTATAGCTTTACAGCAATGGCTTCCTTAAGCTCAACACCAATTAACGATGGAGTCACATCCCTTCTAGGGCAGAGTAATCTAGTGACAAACATGAGAAATCGTATTCTAGTGATTAAACTCACTGACAACAATTACTTGTTGTGGAAATTTCAAGTATTAACAACCATTCAAGGGCTTTGCCTACTGAAATACATCAAAGGAGCTGAAGAACCAACATCACAATTTCTCAACCAGACAACTCAAGAATGCTCCAGTTCTGAAATAAATCCAGCATACGATTCTTGGGTTCAACAAGACAAAATACTCTCATCATGGCTCTTAGGATCTATGACAGAAGATATTCTTGTGCAAATGGTTGAATGA

mRNA sequence

ATGAGCTGGATGGTGAGCTCTGGATACCGCACAGAAGACCTGCAAAACAAAGTAAGCAATCCGATGCCAAAGTCAGTAAGTGTCCAAATCAACTCGAGAGAGAGAATTGGGTTGCTCGAGTACCTCAAAATGAAGCGGAGTGGTTCTATTTATAGCTATAGCTTTACAGCAATGGCTTCCTTAAGCTCAACACCAATTAACGATGGAGTCACATCCCTTCTAGGGCAGAGTAATCTAGTGACAAACATGAGAAATCGTATTCTAGTGATTAAACTCACTGACAACAATTACTTGTTGTGGAAATTTCAAGTATTAACAACCATTCAAGGGCTTTGCCTACTGAAATACATCAAAGGAGCTGAAGAACCAACATCACAATTTCTCAACCAGACAACTCAAGAATGCTCCAGTTCTGAAATAAATCCAGCATACGATTCTTGGGTTCAACAAGACAAAATACTCTCATCATGGCTCTTAGGATCTATGACAGAAGATATTCTTGTGCAAATGGTTGAATGA

Coding sequence (CDS)

ATGAGCTGGATGGTGAGCTCTGGATACCGCACAGAAGACCTGCAAAACAAAGTAAGCAATCCGATGCCAAAGTCAGTAAGTGTCCAAATCAACTCGAGAGAGAGAATTGGGTTGCTCGAGTACCTCAAAATGAAGCGGAGTGGTTCTATTTATAGCTATAGCTTTACAGCAATGGCTTCCTTAAGCTCAACACCAATTAACGATGGAGTCACATCCCTTCTAGGGCAGAGTAATCTAGTGACAAACATGAGAAATCGTATTCTAGTGATTAAACTCACTGACAACAATTACTTGTTGTGGAAATTTCAAGTATTAACAACCATTCAAGGGCTTTGCCTACTGAAATACATCAAAGGAGCTGAAGAACCAACATCACAATTTCTCAACCAGACAACTCAAGAATGCTCCAGTTCTGAAATAAATCCAGCATACGATTCTTGGGTTCAACAAGACAAAATACTCTCATCATGGCTCTTAGGATCTATGACAGAAGATATTCTTGTGCAAATGGTTGAATGA

Protein sequence

MSWMVSSGYRTEDLQNKVSNPMPKSVSVQINSRERIGLLEYLKMKRSGSIYSYSFTAMASLSSTPINDGVTSLLGQSNLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCLLKYIKGAEEPTSQFLNQTTQECSSSEINPAYDSWVQQDKILSSWLLGSMTEDILVQMVE

Homology

[Close]

BLAST of Moc11g14090.1 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-16
Identity = 53/117 (45.30%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 58  MASLSSTPINDGVTSLLGQSNLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCLLKYI 117
           MASLSS   +D    +  Q++   N  +++ +++L D+N LLWKFQ+ T +QG  L  YI
Sbjct: 1   MASLSSIRNSDAARII--QASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYI 60

Query: 118 KGAEEPTSQFLNQTTQECSSSEI--NPAYDSWVQQDKILSSWLLGSMTEDILVQMVE 173
              E+  +QF+  T  E SSS +  NPAY  W++QDK++S+WLLGSM EDIL QM++
Sbjct: 61  DSNEDTPAQFVQTTEDESSSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLD 115

[Close]

BLAST of Moc11g14090.1 vs. NCBI nr
Match: XP_022159146.1 (uncharacterized protein LOC111025572 [Momordica charantia])

HSP 1 Score: 84.7 bits (208), Expect = 8.3e-13
Identity = 41/102 (40.20%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 71  TSLLGQSNLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCLLKYIKGAEEPTSQFLNQ 130
           ++++ Q++ + N  N+I  IKL D N+LLW+ Q+ T +QG  L K+I    +  S+F+  
Sbjct: 10  STVVNQNSTIVNPGNKISTIKLNDENFLLWRLQITTALQGHGLGKFIDPEAKIPSEFVQS 69

Query: 131 TTQECSSSEINPAYDSWVQQDKILSSWLLGSMTEDILVQMVE 173
             +  S    NP + +W +QDK+++SWLLGSM+E+IL QM+E
Sbjct: 70  ADESSSVPSPNPEFINWKRQDKLITSWLLGSMSEEILSQMLE 111

[Close]

BLAST of Moc11g14090.1 vs. NCBI nr
Match: KAA0067213.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-12
Identity = 44/120 (36.67%), Postives = 75/120 (62.50%), Query Frame = 0


Query: 54  SFTAMASLSSTPINDGVTSLLGQSNLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCL 113
           S +++  + +T  +  +  + G S       N+I ++KL+D+N+LLWKFQ+LT ++   L
Sbjct: 3   STSSLLGVENTEASSPINQIFGSS-------NKISLVKLSDDNFLLWKFQILTALEAYDL 62

Query: 114 LKYIKGAEEPTSQFLNQTTQECSSS--EINPAYDSWVQQDKILSSWLLGSMTEDILVQMV 172
             +++   EP S++L  T    +S+    NP Y  W +QD+++SSWLLGSM+E+IL QM+
Sbjct: 63  ENFLESESEPPSKYLISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQML 115

[Close]

BLAST of Moc11g14090.1 vs. NCBI nr
Match: TYK18917.1 (keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-12
Identity = 44/120 (36.67%), Postives = 75/120 (62.50%), Query Frame = 0


Query: 54  SFTAMASLSSTPINDGVTSLLGQSNLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCL 113
           S +++  + +T  +  +  + G S       N+I ++KL+D+N+LLWKFQ+LT ++   L
Sbjct: 3   STSSLLGVENTEASSPINQIFGSS-------NKISLVKLSDDNFLLWKFQILTALEAYDL 62

Query: 114 LKYIKGAEEPTSQFLNQTTQECSSS--EINPAYDSWVQQDKILSSWLLGSMTEDILVQMV 172
             +++   EP S++L  T    +S+    NP Y  W +QD+++SSWLLGSM+E+IL QM+
Sbjct: 63  ENFLESESEPPSKYLISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQML 115

[Close]

BLAST of Moc11g14090.1 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 4.1e-12
Identity = 47/115 (40.87%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 61  LSSTPINDGVTSLLGQS--NLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCLLKYIK 120
           +SST    GV +    S  N +    N+I ++KL D+ +LLWKFQ+LT ++   L  +++
Sbjct: 1   MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLE 60

Query: 121 GAEEPTSQFLNQTTQECSSS--EINPAYDSWVQQDKILSSWLLGSMTEDILVQMV 172
              EP S++L  T    +S+    NPAY  W +QD+++SSWLLGSM+E+IL QM+
Sbjct: 61  SESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQML 115

[Close]

BLAST of Moc11g14090.1 vs. ExPASy TrEMBL
Match: A0A6J1DLT9 (uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021757 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.9e-17
Identity = 53/117 (45.30%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 58  MASLSSTPINDGVTSLLGQSNLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCLLKYI 117
           MASLSS   +D    +  Q++   N  +++ +++L D+N LLWKFQ+ T +QG  L  YI
Sbjct: 1   MASLSSIRNSDAARII--QASKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYI 60

Query: 118 KGAEEPTSQFLNQTTQECSSSEI--NPAYDSWVQQDKILSSWLLGSMTEDILVQMVE 173
              E+  +QF+  T  E SSS +  NPAY  W++QDK++S+WLLGSM EDIL QM++
Sbjct: 61  DSNEDTPAQFVQTTEDESSSSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLD 115

[Close]

BLAST of Moc11g14090.1 vs. ExPASy TrEMBL
Match: A0A6J1E314 (uncharacterized protein LOC111025572 OS=Momordica charantia OX=3673 GN=LOC111025572 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.0e-13
Identity = 41/102 (40.20%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 71  TSLLGQSNLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCLLKYIKGAEEPTSQFLNQ 130
           ++++ Q++ + N  N+I  IKL D N+LLW+ Q+ T +QG  L K+I    +  S+F+  
Sbjct: 10  STVVNQNSTIVNPGNKISTIKLNDENFLLWRLQITTALQGHGLGKFIDPEAKIPSEFVQS 69

Query: 131 TTQECSSSEINPAYDSWVQQDKILSSWLLGSMTEDILVQMVE 173
             +  S    NP + +W +QDK+++SWLLGSM+E+IL QM+E
Sbjct: 70  ADESSSVPSPNPEFINWKRQDKLITSWLLGSMSEEILSQMLE 111

[Close]

BLAST of Moc11g14090.1 vs. ExPASy TrEMBL
Match: A0A5D3D5T2 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001330 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.3e-13
Identity = 44/120 (36.67%), Postives = 75/120 (62.50%), Query Frame = 0


Query: 54  SFTAMASLSSTPINDGVTSLLGQSNLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCL 113
           S +++  + +T  +  +  + G S       N+I ++KL+D+N+LLWKFQ+LT ++   L
Sbjct: 3   STSSLLGVENTEASSPINQIFGSS-------NKISLVKLSDDNFLLWKFQILTALEAYDL 62

Query: 114 LKYIKGAEEPTSQFLNQTTQECSSS--EINPAYDSWVQQDKILSSWLLGSMTEDILVQMV 172
             +++   EP S++L  T    +S+    NP Y  W +QD+++SSWLLGSM+E+IL QM+
Sbjct: 63  ENFLESESEPPSKYLISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQML 115

[Close]

BLAST of Moc11g14090.1 vs. ExPASy TrEMBL
Match: A0A5A7VGJ8 (Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00160 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.3e-13
Identity = 44/120 (36.67%), Postives = 75/120 (62.50%), Query Frame = 0


Query: 54  SFTAMASLSSTPINDGVTSLLGQSNLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCL 113
           S +++  + +T  +  +  + G S       N+I ++KL+D+N+LLWKFQ+LT ++   L
Sbjct: 3   STSSLLGVENTEASSPINQIFGSS-------NKISLVKLSDDNFLLWKFQILTALEAYDL 62

Query: 114 LKYIKGAEEPTSQFLNQTTQECSSS--EINPAYDSWVQQDKILSSWLLGSMTEDILVQMV 172
             +++   EP S++L  T    +S+    NP Y  W +QD+++SSWLLGSM+E+IL QM+
Sbjct: 63  ENFLESESEPPSKYLISTGSSSASATRTPNPTYKVWKRQDRLISSWLLGSMSEEILNQML 115

[Close]

BLAST of Moc11g14090.1 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.0e-12
Identity = 47/115 (40.87%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 61  LSSTPINDGVTSLLGQS--NLVTNMRNRILVIKLTDNNYLLWKFQVLTTIQGLCLLKYIK 120
           +SST    GV +    S  N +    N+I ++KL D+ +LLWKFQ+LT ++   L  +++
Sbjct: 1   MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLE 60

Query: 121 GAEEPTSQFLNQTTQECSSS--EINPAYDSWVQQDKILSSWLLGSMTEDILVQMV 172
              EP S++L  T    +S+    NPAY  W +QD+++SSWLLGSM+E+IL QM+
Sbjct: 61  SESEPPSKYLISTESSSASATGTPNPAYKVWKRQDRLISSWLLGSMSEEILNQML 115

The following BLAST results are available for this feature:

BLAST of Moc11g14090.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154487.1	1.6e-16	45.30	uncharacterized protein LOC111021757 [Momordica charantia]	[more]
XP_022159146.1	8.3e-13	40.20	uncharacterized protein LOC111025572 [Momordica charantia]	[more]
KAA0067213.1	1.1e-12	36.67	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]
TYK18917.1	1.1e-12	36.67	keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]	[more]
KAA0048297.1	4.1e-12	40.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Moc11g14090.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g14090.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLT9	7.9e-17	45.30	uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1E314	4.0e-13	40.20	uncharacterized protein LOC111025572 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A5D3D5T2	5.3e-13	36.67	Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VGJ8	5.3e-13	36.67	Keratin, type II cytoskeletal 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7U233	2.0e-12	40.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Moc11g14090.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc11g14090	Moc11g14090	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc11g14090.1.exon1	Moc11g14090.1.exon1	exon
Moc11g14090.1.exon2	Moc11g14090.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc11g14090.1	cds.Moc11g14090.1	CDS
cds.Moc11g14090.1	cds.Moc11g14090.1_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc11g14090.1	Moc11g14090.1-protein	polypeptide