Moc10g23780.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g23780.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr10: 17096093 .. 17101987 (+)
Sequence length	798
RNA-Seq Expression	Moc10g23780.1
Synteny	Moc10g23780.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATCCTATGAGATGCGATGGAGGCTGCCAGTGAAATGTTTTACAAACAAAGGAGAAGAAGCCGTCGGAGACAACGAAGACGTCGACGAGATGCTTCAGAGGAGACGAAGCCCGATGGTCGGAGCGATGAAAGAATATCAACAAAGATGAAGGAGGTTACGAAATTTTAGGGTTTTAGGAATTTCAGTTTTGGAAATTTGAATTAGCCTAATTTTAGGGATTTGATATATTTTAATAATTATTTACCGTTTTCATATTTTATTAATGATTTAATATTGATATGAATATATTAGTAATTTTTATTATGGGTACCATATAATTTGAGAATTATTTTAGACATAAGTGTAAATTCTAGACCTTTCAATCCGTTTATGTAATTAGAACTCCTAAATAGACCATCTATGTACTAATCCCTAATGTCTTGGACGAGCTGTTTTAGAAACTTATTTTCACAAATGTTTAAGATTTTTCAATTTTACACTTTTAGATTTATGGATTTATGAATTTTTATTAATGCCAAGTTTACCCTTATTTATGACATTTATATTTATTATTGTTAGTTTTTTTTATTTAAACGTAAAAATATTAAATGTTCCAAATTTGATTTTCTAAACCTTTAATTATTGTGGGTCCCAAATCAATTATTTTCATAATCCCTTAATTTACTTCTTGATATATTCTACTAAATAATAAAAATTATTACAAAAATATTTACCCATGATGTCATTCCAATTTTTGCCTAGATTTAACTACATTTCAAATTCAAAATTTTGCTCAATCAATTTAAGATTTGCTGGAGAGCATTAGAGGAAATTTGTCGGTACTATGAGGTAAGATGATAATAGAATTATCGATATTTTTTTATCGCTTAAATTTTCATTTATATGAAGATATAAACTATATCCGAGTATAATCTATAACCATTATAACACACACTTACATGAAGATATTGATGGAACTCTTAGACATGCATAGCGGAAGCTGAGGATCATAATACACTTAATGAAGCAATTTAACTAAAATAAGCATGCTTGAAAAATGATGAAAAAGGTAAAGAGAAAGAGATTAACTTTATACCTTTGAAGACCTCCATTATAACTTCTTCTCCTAACTCAATGGGACCACCAACGACAAATCCGTGCTATCCTCGGGTTGATGAACACGGTTGTGGGACCGAATTTTGAGTGAAAACAAAGGGAAAACACTAATGACTAGGAGAAGACAATAGAAATTTGAGTGGAAAAATTCTGCACTTATGCAATGAAGCATTGGCCTTATCCAAGTGATTTTCATCACCTATATAAAGACCAAATGCATGCAAGGACAAGCCTTGCATGCCTTCCACTTCAAACTCCACTAGCATGTAAAAGATAGGTGTCATTGCCTTGAAGAAACACTTCAAAAACCACTAGTTAGTGGAAAAATCCAACTAACTTGATTTTTTAAATAGAACTTTGATAAAATTAATTTTTATAAAAACAAAAATTGAAATATCAATTTTCTATTAAAACAAAAACCAAGCCAAATCAATATCTCATATTAATTGGTCATTGACACCTAAGCTTGATTAATCACATTAATCAAATTACAACTCTTTTTCATGCTTTGAACTTATTTAAAACTAATTTAAATAAGTCATACTCTCCATAATAATTAAATGTCAATTAAATTATATATTATATCTCATATAAAATACAATATTCCCTTAAAAACCGAATTTGAACACTTTAAATTCTTGCTTCACCTAGTTCATCAATTTTATCCTTTATGAGCTAGCATGGAGACCCGTTGGACCTACAGATCATGGGCTCCAACGATTCGAGACTAACCGGTCAAACTCTTTAACTCAGTTAATCAACATTCGTTAACTAACAGGACTGTCCACTATAGCCTGTAGATGCACTCCCCTCACTGTAGATATATTTGTGTCCATTCGATATAACCGTCATCGATAAGTTGATCTTTCACAAGCCGTTCGTAACCTCAGCTAGGTCGAAAAACTGTTTTACCCCTGAGTTACATCTTTTCTCCTTAAGTACCACTATCCCTCTAATGAACAATTGATTTAGGATCAAATCACTAAATCCAATTCCTCTCGGGCCAGTGAGAGGATGGGGCCCCTTGTTCAAGATCCAGGATCAGCTCTTAAGGGAACAACCTCTCTACTATCCTTAAATCGGGTAGGAGTGAATTATGTCTTGCTAATTCTATGTCCCCAGCTATCTACCCAGTCTTATCCCTGAAATGGGAGGCATATTGAGCAGCGCTGATGAGCTTACTCTCACCTATGCAGATCAAGGGAGAATCCTGAATAAATAGGAATGCATAGTTGGCTCAGGATTTAGATCAAGTTATTTAGGTCATCGATAAACGAAATTAATCAGTGTTATCCGTAAACGGTGTTAATATGTAACAGTGATTATTTCAGGGTCAGTCTTACACAATCTCATTGTGTAGAACACCCCTGCTCACATGTTTCTACACGAACGAATCAGGATCACTTCATTTATGACACCTTACAACATTTGTAACAATCATAAAGCGGGCCGTATTCAATAGTGTCTCCAGGAAAAGGTACCCAACTTGATCCATGTACTATTAGACTGTTTAGGCTATTTACTTGAACTTGATCCAGTTTATGTCTCCACATAAAGTCCAAGTACTCATTATAATAGCCAAGGATTCGTAGTTTATTGGATTTATTAAAAAACAAATTCACTTTCATTTAACAACACTTGTTTGAATAACCTCACATTAATGTTCACTGTTTACAAACTACGAGTTTTAGGACATAGTACCCAACAGATATAAACTATATCTGGCTATAAACGATAACTTATATATGAACTATAAAATATATACGGCTATATCCCTCTACAATTAACAAACAAAGCTAATAACCTACATAATCAAATATATACGACATTACCATCGAATACTTTTTAAATAACCCAAAATCGAACATCCAAAATCGAACACCCAAAATCAAAAATAAAAAACAAACCTAGAATATTTAAAACGTAAACGACAAAAAACAAGCTATCGGAAACAATGGTGAAAAGCGAGCGAATTGAAAACGGGCTGCCGGATACAGTAACGACAAAAAACGAAAACACTAAGAAGATAAGGAGATGGCCTGCTGGAAACAATTGTGAAAAGTGAGAGAAAAGAAGACGAATGAAGAAGATGGAGAGATAATTAAAAAGTTTGGAAGTTTTGTTTTTTTAGTAAAGTGAATATAAATTTAGGGATTTAAAAAGTAAACCCCAAAATCAATTTCATCTATAAGAAGTGTACTTTAAGACAAAAAAATGTAAATTTTGTAAAATGAATCTCTTTATGTAATTATCATCTCCAAAGGGTCTACCAATGTAATAATCCCTTCACTTTTACTATACATTTCTAAAAATTTTAGTGTTTAATTTTCACAATTGATAGTTTATAGGTGCAATAGTAACATCTACCATACTACATGAGTGGTAATATGATCATAATTGGCCTCAAGTCCTTGGAGCCAACTCAAGCTAAGATGAGAGCACCACCGCACACGAAATGCCCACGGCGCGCACGTGTACAACATCAACAGCCGGCTAACCTCACAAGGCGTAACCCCGCACGCACCTGCCTGTTGGGTTTTATGCCCTGAACTCGTGGTTTGTAAACATAAAACAAATATTCATTCAATAAATTTGTTATTGATGTTTCTCTTAGAATTTCATTAACCAAAATCCAATAAACTAATATCTGAGGTTACGTCATGTAACTGAAACAGTATATAACAGATATACAGTATATATTTAATATAAAACGTATATATTTGATATACATTATATATATATATATATATATATATATATATACAATATATATTCGATATACAGGTGGATAATGTTCCAGTAGTAACCTAAAAGGTCTATAGTATATGGATAAGGTTGGGTATCTTATCCTGATAACACTATGGATACGGCCCACTTTGTAATAGTTACAAATCACTTGATCCAAGTCGTTGGTGTGGAGACATGTAAGTGGGGGTATCCTATACAATAAGTTTGTATAAGACTGGACCACGAAATAATTAATCTTTAGCTGTAACAATGTTAGCTAATAGATTAATATTTCAAAAGGATGATCGTGTACATTGATCTCAATCCGGAGTGAGTTATGAACTCTTGCCTATTAGGGCTCATCCTTTGATTTGTATGGGTGACAGTGGCCTAAGTCGCCGACTCAATATTCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGAGAACATAACTACACAAGATGAAATTCACTCCTTCCCAACTTTAGGGTAAGTAGATAAGTGTTCTCTTAAGTGCTGACTCCGAGACTTGAACAAGGGGTCACACCCTCTCACTGGTCCAAGAGGGACTTTCAGTTATTGGTTAGACCATAACCGGGTTGTTCATTAGAGGATCAGCGGTACTTAAGGTACAAGATGTAACAGAGGGGTAAAATGGTAATTTGACCAAACTGTGGTTACAAACACTCGTGAAGAATTGACTTACCGTTAATGGTCAAAAGCCATGGACGCAAAATATTCTACCGTGAAAAGAGTGCAACTGTGGGTCTTTAGTGGAGTGACCGACAGTTAACGAATGTTGATTAATATGGTTAATAAGTTTAATCAATTAATCTCGTATCGTTTGAGCTTTCGATCTGTAGGTCCATTATGTCCCCTTGCTAGCTTGTAAAGGATAGTTAAGAACATTTAGTCTTCAAAAGAATTTGAATTGTTCAAATTAGTTGAAGGGAATTAAGGCTAATTGTATAAGATGCAATTAATATAATGTATGTTGATACATTATAATATAAAATTAATTTTGAATTCGATTCAAAATGATGAGAGAGATGAATATTAGAATTTGATTCTAATATAGTTGATTAATTTAAGTTTAATTTAATTAAATATGATCTAATTAAATTAATGTGATATATTAATTTGGTTAAATTAAATTAGATTTCGTTAAATTAAATTAATAATGATTTTTTGTAATTAATTAAATTAGATTTAATTAATTATTATTTTAATTAAAAAAAGAAAAAAAAAGAAAATAGGAAGAAAACCTCTCACTTTCCACCAGGGAAGTGAGTGGGGGAGTGGTGACTTTCTCCTCACTCCTCCTCCCCTATATAACGGAGGTTCTCCCATTTCTTTCAGTAGCCCGAATGTTGATTGATAAAGTTTCTGAAACTCCAACGAGAAAATCTCTCTCTCAATTTCTCAATTTCCCTTTCAACTATAAGACGATTCCCACAAACCGAGTTCTTAACTTCCAGAGGATAACGAGGAAGACTTTGTGGTGGTGTTGGTGTTTACATCGAAGAGGTGTCTTTAAAGGTATGTATCATTAACTTTTTTTTATTCATGCTTATGTATTTTCTTTGTTGTAATTCTAAAACAAGATTGAAGCACACGCGTTCGCGCACTTCCGCTGTAGGATCCGATCTCTTCACCGCAGCATCCACAGCTCGTGCATGCTTGCACTCGCGCCCCCACCTGCTGCCAACGCACACGCGTGCCCCAGCCTTGCCAGCGCCCACACACTTCCACCATGCTAACCTCACAAGAGGCCATCGCCATCGCCAGTACGCGCGCCTGTCGGATGCCTGCCTATCGCCTAGCGACCACACTCGCGCGTCCTTCCTGCCACTAGCGTGCCCTTACCTCGCCAACCTCACAGCACCCTCGACCGTGCAACCACGCGCATCACTGTCGTGCCAACCTCCCAGCATGGCCCTATTGCGTGCGCCGCACGCCCCTGTATCGCGCTCACGTCTCACCTATCGCCAAACACCCATGCCCTGGCACCTCTGCTCAGCGCCACGCATTTGCCCACTTAGCGCCATGCGCATACCCCGTTAG

mRNA sequence

ATGTTATCCTATGAGATGCGATGGAGGCTGCCAGTGAAATGTTTTACAAACAAAGGAGAAGAAGCCGTCGGAGACAACGAAGACGTCGACGAGATGCTTCAGAGGAGACGAAGCCCGATGGATCAAATCACTAAATCCAATTCCTCTCGGGCCAGTGAGAGGATGGGGCCCCTTGTTCAAGATCCAGGATCAGCTCTTAAGGGAACAACCTCTCTACTATCCTTAAATCGGTGGCCTAAGTCGCCGACTCAATATTCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGAGAACATAACTACACAAGATGAAATTCACTCCTTCCCAACTTTAGGATTGAAGCACACGCGTTCGCGCACTTCCGCTGTAGGATCCGATCTCTTCACCGCAGCATCCACAGCTCGTGCATGCTTGCACTCGCGCCCCCACCTGCTGCCAACGCACACGCGTGCCCCAGCCTTGCCAGCGCCCACACACTTCCACCATGCTAACCTCACAAGAGGCCATCGCCATCGCCAGTACGCGCGCCTGTCGGATGCCTGCCTATCGCCTAGCGACCACACTCGCGCGTCCTTCCTGCCACTAGCGTGCCCTTACCTCGCCAACCTCACAGCACCCTCGACCGTGCAACCACGCGCATCACTGTCGTGCCAACCTCCCAGCATGGCCCTATTGCGTGCGCCGCACGCCCCTGTATCGCGCTCACGTCTCACCTATCGCCAAACACCCATGCCCTGGCACCTCTGCTCAGCGCCACGCATTTGCCCACTTAGCGCCATGCGCATACCCCGTTAG

Coding sequence (CDS)

ATGTTATCCTATGAGATGCGATGGAGGCTGCCAGTGAAATGTTTTACAAACAAAGGAGAAGAAGCCGTCGGAGACAACGAAGACGTCGACGAGATGCTTCAGAGGAGACGAAGCCCGATGGATCAAATCACTAAATCCAATTCCTCTCGGGCCAGTGAGAGGATGGGGCCCCTTGTTCAAGATCCAGGATCAGCTCTTAAGGGAACAACCTCTCTACTATCCTTAAATCGGTGGCCTAAGTCGCCGACTCAATATTCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGAGAACATAACTACACAAGATGAAATTCACTCCTTCCCAACTTTAGGATTGAAGCACACGCGTTCGCGCACTTCCGCTGTAGGATCCGATCTCTTCACCGCAGCATCCACAGCTCGTGCATGCTTGCACTCGCGCCCCCACCTGCTGCCAACGCACACGCGTGCCCCAGCCTTGCCAGCGCCCACACACTTCCACCATGCTAACCTCACAAGAGGCCATCGCCATCGCCAGTACGCGCGCCTGTCGGATGCCTGCCTATCGCCTAGCGACCACACTCGCGCGTCCTTCCTGCCACTAGCGTGCCCTTACCTCGCCAACCTCACAGCACCCTCGACCGTGCAACCACGCGCATCACTGTCGTGCCAACCTCCCAGCATGGCCCTATTGCGTGCGCCGCACGCCCCTGTATCGCGCTCACGTCTCACCTATCGCCAAACACCCATGCCCTGGCACCTCTGCTCAGCGCCACGCATTTGCCCACTTAGCGCCATGCGCATACCCCGTTAG

Protein sequence

MLSYEMRWRLPVKCFTNKGEEAVGDNEDVDEMLQRRRSPMDQITKSNSSRASERMGPLVQDPGSALKGTTSLLSLNRWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLGLKHTRSRTSAVGSDLFTAASTARACLHSRPHLLPTHTRAPALPAPTHFHHANLTRGHRHRQYARLSDACLSPSDHTRASFLPLACPYLANLTAPSTVQPRASLSCQPPSMALLRAPHAPVSRSRLTYRQTPMPWHLCSAPRICPLSAMRIPR

Homology

[Close]

BLAST of Moc10g23780.1 vs. NCBI nr
Match: KAA0040839.1 (uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa] >TYK17815.1 uncharacterized protein E5676_scaffold306G00640 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 8.1e-07
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 77  RWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLG 114
           R  K PTQY+YHFGDKT+WGA NI TQDEIHSF TLG
Sbjct: 27  RVAKLPTQYAYHFGDKTKWGAGNIITQDEIHSFATLG 63

[Close]

BLAST of Moc10g23780.1 vs. NCBI nr
Match: KAA0042877.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK05280.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-06
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 77  RWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLGL 115
           R  K  TQY+YHFGDKTEWGAENI TQD IHSFP LG+
Sbjct: 757 RVAKLSTQYAYHFGDKTEWGAENIITQDGIHSFPPLGV 794

[Close]

BLAST of Moc10g23780.1 vs. NCBI nr
Match: KAA0025994.1 (retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-06
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 73  LSLNRWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLG 114
           +SL R  + PTQY+YHFGDKTEWGA N  TQD IHSFP LG
Sbjct: 220 ISLVRVARLPTQYAYHFGDKTEWGAGNTITQDGIHSFPPLG 260

[Close]

BLAST of Moc10g23780.1 vs. NCBI nr
Match: KAA0065950.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-06
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 77  RWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLG 114
           R  + PTQY+YHFGDKTEWGA NI TQD IHSFP LG
Sbjct: 98  RVARLPTQYAYHFGDKTEWGAGNIITQDGIHSFPLLG 134

[Close]

BLAST of Moc10g23780.1 vs. NCBI nr
Match: TYK19425.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-06
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 82  PTQYSYHFGDKTEWGAENITTQDEIHSFPTLG 114
           PTQY+YHFGDKTEWGA NITTQD IH FP LG
Sbjct: 410 PTQYAYHFGDKTEWGAGNITTQDGIHFFPPLG 441

[Close]

BLAST of Moc10g23780.1 vs. ExPASy TrEMBL
Match: A0A5A7THR9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00640 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.9e-07
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 77  RWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLG 114
           R  K PTQY+YHFGDKT+WGA NI TQDEIHSF TLG
Sbjct: 27  RVAKLPTQYAYHFGDKTKWGAGNIITQDEIHSFATLG 63

[Close]

BLAST of Moc10g23780.1 vs. ExPASy TrEMBL
Match: A0A5D3C1P5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00970 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.1e-07
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 77  RWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLGL 115
           R  K  TQY+YHFGDKTEWGAENI TQD IHSFP LG+
Sbjct: 757 RVAKLSTQYAYHFGDKTEWGAENIITQDGIHSFPPLGV 794

[Close]

BLAST of Moc10g23780.1 vs. ExPASy TrEMBL
Match: A0A5A7SJY0 (Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G003160 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.7e-07
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 73  LSLNRWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLG 114
           +SL R  + PTQY+YHFGDKTEWGA N  TQD IHSFP LG
Sbjct: 220 ISLVRVARLPTQYAYHFGDKTEWGAGNTITQDGIHSFPPLG 260

[Close]

BLAST of Moc10g23780.1 vs. ExPASy TrEMBL
Match: A0A5A7VFG5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00390 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-06
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 77  RWPKSPTQYSYHFGDKTEWGAENITTQDEIHSFPTLG 114
           R  + PTQY+YHFGDKTEWGA NI TQD IHSFP LG
Sbjct: 98  RVARLPTQYAYHFGDKTEWGAGNIITQDGIHSFPLLG 134

[Close]

BLAST of Moc10g23780.1 vs. ExPASy TrEMBL
Match: A0A5D3D7C0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00670 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-06
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 82  PTQYSYHFGDKTEWGAENITTQDEIHSFPTLG 114
           PTQY+YHFGDKTEWGA NITTQD IH FP LG
Sbjct: 410 PTQYAYHFGDKTEWGAGNITTQDGIHFFPPLG 441

The following BLAST results are available for this feature:

BLAST of Moc10g23780.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040839.1	8.1e-07	78.38	uncharacterized protein E6C27_scaffold333G00600 [Cucumis melo var. makuwa] >TYK1...	[more]
KAA0042877.1	1.1e-06	76.32	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK05280.1 gag-pol polyprotein [...	[more]
KAA0025994.1	1.4e-06	70.73	retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]	[more]
KAA0065950.1	2.3e-06	75.68	ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK30278.1 ty1-cop...	[more]
TYK19425.1	3.1e-06	84.38	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc10g23780.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc10g23780.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7THR9	3.9e-07	78.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C1P5	5.1e-07	76.32	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G...	[more]
A0A5A7SJY0	6.7e-07	70.73	Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa...	[more]
A0A5A7VFG5	1.1e-06	75.68	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3D7C0	1.5e-06	84.38	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G0067...	[more]

BLAST of Moc10g23780.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..54

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc10g23780	Moc10g23780	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc10g23780.1.exon1	Moc10g23780.1.exon1	exon
Moc10g23780.1.exon2	Moc10g23780.1.exon2	exon
Moc10g23780.1.exon3	Moc10g23780.1.exon3	exon
Moc10g23780.1.exon4	Moc10g23780.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc10g23780.1	cds.Moc10g23780.1	CDS
cds.Moc10g23780.1	cds.Moc10g23780.1_2	CDS
cds.Moc10g23780.1	cds.Moc10g23780.1_3	CDS
cds.Moc10g23780.1	cds.Moc10g23780.1_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc10g23780.1	Moc10g23780.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding