Moc08g37020.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g37020.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr8: 27531348 .. 27533066 (+)
Sequence length	1029
RNA-Seq Expression	Moc08g37020.1
Synteny	Moc08g37020.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGATGAAGATTGGGTGGAGACAAATGAACAGGCAGTTGCCTTTATCAGATTGTGTATGAATGTGGCAAGTCTCGTAGTAAACGAAACGACAGCAATATATCTGATGAAAGCACTGGAGAATAGGTACAAGAAACCTTTAGCTAATAATAAGGTATATCTCGTAAGGAGATTCTTTAACATTCAAATGGAAGAGAATACTTCTGTCAATTCCCACATAAATGAGATCACAAAATTAATCAATCAATTGGCATCGGTTAAGATTACTTTTAGTGACGAAGTGAATGCTATTCAGTTGCTAACATCTTTACCTAAAAGTTGGGAAACGATGAAGACAGCAGTGTCCAATTCGTTAGAAGACAAATCTTTGAAATTTTCAGAAATTTGTGATGCGGCAATTGCTGAAAAAATTCGCAGAGAGGAGAGTGGAAAAGAATCTACTTCCGTACAAAAGCTCAGCATTGGCTGTCGAAAAAGGTAAAGAGAAGGTTGTGTTTGATGACAGGCAATAAAAGCATAGTAGGAGGGATTGGAAGAGAGATGTTGAATGTTTTCACAACCACAAAAAAGGCCACATCAAGAAAAACTGTAGAATATTAAAAGAAGATCTGAAAAGGTATATGGCGGAGTCAAATGCAGTTGTAGACGATACCCTCGTCTCTGTTGCAAGCAACACAGAAACAGAAAACCAGTCATCGGAGTGGCTAATAGACAGCTCAGCTTCAGTACACATATCTTCAAATAGAAGATTATTCACATCTTTCAGAAGAGGCAATCACAGCCACGTGAGGATGTGGAATGGAAGACTTTCCAAGACTAAAGGGATCGGAAATGTACGATTGAAGATTGATAGTGGGACCGAGTTATTAGTGCGAGATGTCAGGTATGTACCCAATATTAGAATGAACTTTATCTCTACAGGTAAGTTGGACAATGATGGTTATCAGAGTGAGTTTGGTGGGAACCAGTGGAAGCTCACCAAAGGATCCAAGTTGGTGACAATTGGCCATAGAAGATCTACAGTTTACACATCGCAATTGAGTGTTGCCAGAGGATCATTGAAACAGTGGATGCAAGTTGCAGATGGTGTCCAAAGAAGTAGGACTAAGCCAGCAACAAAGACAACCTGAACAGATCAGGAGGATTTGCCATCAATTCAGGAACAACAATTGGGAAGTCAGAGAACGAGAACAGGTTCTTTAGGTTGTCTGGGATTATCTCCAATTGTCAGACGAATGGGTGAATTGATGAAGTCGCGTCAGTGAAAAGTTGCATCAGAGAAGATGAACTCAGTAGGTGCTGAGGTAAAGAATGAAGTTTCAATTCTGGCAGCAGTGGGGAGTTCTTTCTTCAAGAATCAGTGTTTGAGAATGAAGAAGGAAGCTTCAGATATCGCCACTTAGTTTGAGTGGGAACACGTGGCTATGTCTCTTGCATTTGGGAGACAAGACCACGTAGATTGTCTAACCGCAGGGCAAAGACAGATGAGACCAGTGATTTCTGATATTTTGTTGTACAAATTTTTAAACTTGCAGGAGAAGCCTTGAAGATTTTTTCAAGAAGATTAGAAGTTGTTGCAATAGAAGCCTTGAAGTTTTCCAAGATTATCAAAGACTATTGTTGCAGTGGGAAGCAAGATCGATGTTTTGTCTCCAAGTGGGAGATTGTTGGGATAATGGAGTCAAAACAGATGACCAGTGTCCTACGAGGAAAATGA

mRNA sequence

ATGAAAGATGAAGATTGGGTGGAGACAAATGAACAGGCAGTTGCCTTTATCAGATTGTGTATGAATGTGGCAAGTCTCGTAGTAAACGAAACGACAGCAATATATCTGATGAAAGCACTGGAGAATAGGTACAAGAAACCTTTAGCTAATAATAAGGTATATCTCGTAAGGAGATTCTTTAACATTCAAATGGAAGAGAATACTTCTGTCAATTCCCACATAAATGAGATCACAAAATTAATCAATCAATTGGCATCGGTTAAGATTACTTTTAGTGACGAAGTGAATGCTATTCAGTTGCTAACATCTTTACCTAAAAGTTGGGAAACGATGAAGACAGCAGTGTCCAATTCGTTAGAAGACAAATCTTTGAAATTTTCAGAAATTTGTGATGCGGCAATTGCTGAAAAAATTCGCAGAGAGGAGAGTGGAAAAGAATCTACTTCCGTACAAAAGCTCAGCATTGGCTGTCGAAAAAGGTATATGGCGGAGTCAAATGCAGTTGTAGACGATACCCTCGTCTCTGTTGCAAGCAACACAGAAACAGAAAACCAGTCATCGGAGTGGCTAATAGACAGCTCAGCTTCAGTACACATATCTTCAAATAGAAGATTATTCACATCTTTCAGAAGAGGCAATCACAGCCACGTGAGGATGTGGAATGGAAGACTTTCCAAGACTAAAGGGATCGGAAATAGTGAGTTTGGTGGGAACCAGTGGAAGCTCACCAAAGGATCCAAGTTGGTGACAATTGGCCATAGAAGATCTACAGTTTACACATCGCAATTGAGTGTTGCCAGAGGATCATTGAAACAGTGGATGCAAGTTGCAGATGGTGTCCAAAGAAGAGAAGCCTTGAAGATTTTTTCAAGAAGATTAGAAGTTGTTGCAATAGAAGCCTTGAAGTTTTCCAAGATTATCAAAGACTATTGTTGCAGTGGGAAGCAAGATCGATGTTTTGTCTCCAAGTGGGAGATTGTTGGGATAATGGAGTCAAAACAGATGACCAGTGTCCTACGAGGAAAATGA

Coding sequence (CDS)

ATGAAAGATGAAGATTGGGTGGAGACAAATGAACAGGCAGTTGCCTTTATCAGATTGTGTATGAATGTGGCAAGTCTCGTAGTAAACGAAACGACAGCAATATATCTGATGAAAGCACTGGAGAATAGGTACAAGAAACCTTTAGCTAATAATAAGGTATATCTCGTAAGGAGATTCTTTAACATTCAAATGGAAGAGAATACTTCTGTCAATTCCCACATAAATGAGATCACAAAATTAATCAATCAATTGGCATCGGTTAAGATTACTTTTAGTGACGAAGTGAATGCTATTCAGTTGCTAACATCTTTACCTAAAAGTTGGGAAACGATGAAGACAGCAGTGTCCAATTCGTTAGAAGACAAATCTTTGAAATTTTCAGAAATTTGTGATGCGGCAATTGCTGAAAAAATTCGCAGAGAGGAGAGTGGAAAAGAATCTACTTCCGTACAAAAGCTCAGCATTGGCTGTCGAAAAAGGTATATGGCGGAGTCAAATGCAGTTGTAGACGATACCCTCGTCTCTGTTGCAAGCAACACAGAAACAGAAAACCAGTCATCGGAGTGGCTAATAGACAGCTCAGCTTCAGTACACATATCTTCAAATAGAAGATTATTCACATCTTTCAGAAGAGGCAATCACAGCCACGTGAGGATGTGGAATGGAAGACTTTCCAAGACTAAAGGGATCGGAAATAGTGAGTTTGGTGGGAACCAGTGGAAGCTCACCAAAGGATCCAAGTTGGTGACAATTGGCCATAGAAGATCTACAGTTTACACATCGCAATTGAGTGTTGCCAGAGGATCATTGAAACAGTGGATGCAAGTTGCAGATGGTGTCCAAAGAAGAGAAGCCTTGAAGATTTTTTCAAGAAGATTAGAAGTTGTTGCAATAGAAGCCTTGAAGTTTTCCAAGATTATCAAAGACTATTGTTGCAGTGGGAAGCAAGATCGATGTTTTGTCTCCAAGTGGGAGATTGTTGGGATAATGGAGTCAAAACAGATGACCAGTGTCCTACGAGGAAAATGA

Protein sequence

MKDEDWVETNEQAVAFIRLCMNVASLVVNETTAIYLMKALENRYKKPLANNKVYLVRRFFNIQMEENTSVNSHINEITKLINQLASVKITFSDEVNAIQLLTSLPKSWETMKTAVSNSLEDKSLKFSEICDAAIAEKIRREESGKESTSVQKLSIGCRKRYMAESNAVVDDTLVSVASNTETENQSSEWLIDSSASVHISSNRRLFTSFRRGNHSHVRMWNGRLSKTKGIGNSEFGGNQWKLTKGSKLVTIGHRRSTVYTSQLSVARGSLKQWMQVADGVQRREALKIFSRRLEVVAIEALKFSKIIKDYCCSGKQDRCFVSKWEIVGIMESKQMTSVLRGK

Homology

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BLAST of Moc08g37020.1 vs. NCBI nr
Match: RVW60263.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 153.7 bits (387), Expect = 2.9e-33
Identity = 101/268 (37.69%), Postives = 153/268 (57.09%), Query Frame = 0


Query: 1   MKDEDWVETNEQAVAFIRLCM--NVASLVVNETTAIYLMKALENRYKKPLANNKVYLVRR 60
           MK E+W   + Q +  IRL +  +VA  VV E T   LMKAL   Y+KP ANNKV+L+++
Sbjct: 47  MKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKK 106

Query: 61  FFNIQMEENTSVNSHINEITKLINQLASVKITFSDEVNAIQLLTSLPKSWETMKTAVSNS 120
            FN++M EN SV  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWE M+ AVSNS
Sbjct: 107 LFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNS 166

Query: 121 LEDKSLKFSEICDAAIAEKIRREESGKESTSVQKLSIGCRKRYMAESNAVVDDTLVSVAS 180
              + LK+++I D  +AE+IRR ++G+ S S   L++  R R       V D  L++V S
Sbjct: 167 TGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGR-----EEVQDALLLAVDS 226

Query: 181 NTETENQSSEWLIDSSASVHISSNRRLFTSFRRGNHSHVRMWNGRLSKTKGIGNSEF--- 240
             +      +W++DS AS H + +R +  ++  G+   V + +G      G+G+      
Sbjct: 227 PLD------DWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLP 286

Query: 241 GGNQWKLTKGSKLVTIGHRRSTVYTSQL 264
            G+ W L K   +  +  RR+ +   QL
Sbjct: 287 NGSVWLLEKVRHIPDL--RRNLISVGQL 301

[Close]

BLAST of Moc08g37020.1 vs. NCBI nr
Match: RVW82472.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 149.8 bits (377), Expect = 4.2e-32
Identity = 117/371 (31.54%), Postives = 189/371 (50.94%), Query Frame = 0


Query: 1   MKDEDWVETNEQAVAFIRLCM--NVASLVVNETTAIYLMKALENRYKKPLANNKVYLVRR 60
           MK E+W   + Q +  IRL +  +VA  VV E T   LMKAL   Y+KP ANNKV+L+++
Sbjct: 47  MKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKK 106

Query: 61  FFNIQMEENTSVNSHINEITKLINQLASVKITFSDEVNAIQLLTSLPKSWETMKTAVSNS 120
            FN++M EN SV  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWE M+ AVSNS
Sbjct: 107 LFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNS 166

Query: 121 LEDKSLKFSEICDAAIAEKIRREESGKESTSVQKLSIGCR--------------KRYMAE 180
              + LK+++I D  +AE+IRR ++G+ S S   L++  R              K     
Sbjct: 167 TGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGRGHFKRQCKSPKKKNEDDS 226

Query: 181 SNAVVDDTLVSVASNTETENQSSEWLIDSSASVHISSNRRLFTSFRRGNHSHVRMWNGRL 240
           +NAV ++  V  A     ++   +W++DS AS H + +R +  ++  G+   V + +G  
Sbjct: 227 ANAVTEE--VQDALLLAVDSPLDDWVLDSRASFHTTPHREIIQNYVAGDFGKVYLADGSA 286

Query: 241 SKTKGIGNSEF---GGNQWKLTKGSKLVTIGHRRSTVYTSQLSVARGSLKQWMQVAD--- 300
               G+G+       G+ W L K   +  +  RR+ +   QL    G    ++ VAD   
Sbjct: 287 LDVVGLGDVRISLPNGSIWLLEKVRHIPDL--RRNLISVGQLD-DEGHAILFVGVADAST 346

Query: 301 ---------GVQRREALKIFSRRLEVVAIEALKFSKIIKDYCCSGKQDRCFVSKWEIVGI 341
                    G    + +K+   + ++  ++++ F   + + C  GKQ +    KW+ +  
Sbjct: 347 DTSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFD--MCESCILGKQKK----KWKAMVE 406

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BLAST of Moc08g37020.1 vs. NCBI nr
Match: RVW34240.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 149.4 bits (376), Expect = 5.5e-32
Identity = 98/271 (36.16%), Postives = 150/271 (55.35%), Query Frame = 0


Query: 1   MKDEDWVETNEQAVAFIRLCM--NVASLVVNETTAIYLMKALENRYKKPLANNKVYLVRR 60
           MK E+W   + Q +  IRL +  +VA  VV E T   LMKAL   Y+KP ANNKV+L+++
Sbjct: 47  MKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKK 106

Query: 61  FFNIQMEENTSVNSHINEITKLINQLASVKITFSDEVNAIQLLTSLPKSWETMKTAVSNS 120
            FN++M EN SV  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWE M+ AVSNS
Sbjct: 107 LFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNS 166

Query: 121 LEDKSLKFSEICDAAIAEKIRREESGKESTSVQKLSIGCR--------------KRYMAE 180
              + LK+++I D  +AE+IRR ++G+ S S   L++  R              K     
Sbjct: 167 TGKEKLKYNDIRDLILAEEIRRRDAGETSGSSSALNLETRGRGHFKRQCKSPKKKNEDDS 226

Query: 181 SNAVVDDTLVSVASNTETENQSSEWLIDSSASVHISSNRRLFTSFRRGNHSHVRMWNGRL 240
           +NAV ++  V  A     ++   +W++DS AS H + +R +  ++  G+   V + +G  
Sbjct: 227 ANAVTEE--VQDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSA 286

Query: 241 SKTKGIGNSEF---GGNQWKLTKGSKLVTIG 253
               G+G+       G+ W L K   +  +G
Sbjct: 287 LDVVGLGDVRISLPNGSVWLLEKVRHIPDLG 315

[Close]

BLAST of Moc08g37020.1 vs. NCBI nr
Match: RVX07359.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 149.1 bits (375), Expect = 7.2e-32
Identity = 97/268 (36.19%), Postives = 150/268 (55.97%), Query Frame = 0


Query: 1   MKDEDWVETNEQAVAFIRLCM--NVASLVVNETTAIYLMKALENRYKKPLANNKVYLVRR 60
           MK E+W   + Q +  IRL +  +VA  VV E T   LMKAL   Y+KP ANNKV+L+++
Sbjct: 1   MKAEEWALLDRQVLGVIRLTLSKSVAHNVVKEKTTTDLMKALSGMYEKPSANNKVHLMKK 60

Query: 61  FFNIQMEENTSVNSHINEITKLINQLASVKITFSDEVNAIQLLTSLPKSWETMKTAVSNS 120
            FN++M EN SV  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWETMK AVSNS
Sbjct: 61  LFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWETMKMAVSNS 120

Query: 121 LEDKSLKFSEICDAAIAEKIRREESGKESTSVQKLSIGCRKRYMAESNAVVDDTLVSVAS 180
              + LK+++I    +AE+IR  ++ + S S   L++  R R  A      +   V    
Sbjct: 121 TGKEKLKYNDIRYLILAEEIRLRDASETSGSGSALNLETRSRDQANK---YNAGTVGKQV 180

Query: 181 NTETENQSSEWLIDSSASVHISSNRRLFTSFRRGNHSHVRMWNGRLSKTKGIGNSEF--- 240
             + ++   +W++DS AS H + +R +  ++  G+   V + +G      G+G+      
Sbjct: 181 TLKVDSPLDDWILDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLP 240

Query: 241 GGNQWKLTKGSKLVTIGHRRSTVYTSQL 264
            G+ W L K   ++ +  RR+ +   QL
Sbjct: 241 NGSVWLLEKVRHILDL--RRNLISVGQL 263

[Close]

BLAST of Moc08g37020.1 vs. NCBI nr
Match: RVW73393.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 149.1 bits (375), Expect = 7.2e-32
Identity = 101/282 (35.82%), Postives = 155/282 (54.96%), Query Frame = 0


Query: 1   MKDEDWVETNEQAVAFIRLCM--NVASLVVNETTAIYLMKALENRYKKPLANNKVYLVRR 60
           MK E+W   + Q +  IRL +  +VA  VV E T   LMKAL   Y+KP ANNKV+L+++
Sbjct: 47  MKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKK 106

Query: 61  FFNIQMEENTSVNSHINEITKLINQLASVKITFSDEVNAIQLLTSLPKSWETMKTAVSNS 120
            FN++M EN SV  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWE M+ AVSNS
Sbjct: 107 LFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNS 166

Query: 121 LEDKSLKFSEICDAAIAEKIRREESGKESTSVQKLSIGCR--------------KRYMAE 180
              + LK+++I D  +AE+IRR ++G+ S S   L++  R              K     
Sbjct: 167 TGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGRGHFKRQCKSPKKKNEDDS 226

Query: 181 SNAVVDDTLVSVASNTETENQSSEWLIDSSASVHISSNRRLFTSFRRGNHSHVRMWNGRL 240
           +NAV ++  V  A     ++   +W++DS AS H + +R +  ++  G+   V + +G  
Sbjct: 227 ANAVTEE--VQDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSA 286

Query: 241 SKTKGIGNSEF---GGNQWKLTKGSKLVTIGHRRSTVYTSQL 264
               G+G+       G+ W L K   +  +  RR+ +   QL
Sbjct: 287 LDVVGLGDVRISLPNGSVWLLEKVRHIPDL--RRNLISVGQL 324

[Close]

BLAST of Moc08g37020.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.0e-18
Identity = 104/421 (24.70%), Postives = 172/421 (40.86%), Query Frame = 0


Query: 1   MKDEDWVETNEQAVAFIRLCM--NVASLVVNETTAIYLMKALENRYKKPLANNKVYLVRR 60
           MK EDW + +E+A + IRL +  +V + +++E TA  +   LE+ Y      NK+YL ++
Sbjct: 47  MKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQ 106

Query: 61  FFNIQMEENTSVNSHINEITKLINQLASVKITFSDEVNAIQLLTSLPKSWETMKTAVSNS 120
            + + M E T+  SH+N    LI QLA++ +   +E  AI LL SLP S++ + T + + 
Sbjct: 107 LYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHG 166

Query: 121 --------------LEDKSLKFSEICDAAIAEKIR----------------REESGKEST 180
                         L +K  K  E    A+  + R                R +S   S 
Sbjct: 167 KTTIELKDVTSALLLNEKMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSK 226

Query: 181 SVQKLSIGC-------------RKRYMAESNAVVDDTLVSVASNTET------------- 240
           S  +    C             RK     S    DD   ++  N +              
Sbjct: 227 SRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMH 286

Query: 241 -ENQSSEWLIDSSASVHISSNRRLFTSFRRGNHSHVRMWNGRLSKTKGIGN--------- 300
                SEW++D++AS H +  R LF  +  G+   V+M N   SK  GIG+         
Sbjct: 287 LSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGC 346

Query: 301 -----------------------------SEFGGNQWKLTKGSKLVTIGHRRSTVYTSQL 319
                                        S F   +W+LTKGS ++  G  R T+Y +  
Sbjct: 347 TLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNA 406

[Close]

BLAST of Moc08g37020.1 vs. ExPASy TrEMBL
Match: A0A438FJS0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4031 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-33
Identity = 101/268 (37.69%), Postives = 153/268 (57.09%), Query Frame = 0


Query: 1   MKDEDWVETNEQAVAFIRLCM--NVASLVVNETTAIYLMKALENRYKKPLANNKVYLVRR 60
           MK E+W   + Q +  IRL +  +VA  VV E T   LMKAL   Y+KP ANNKV+L+++
Sbjct: 47  MKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKK 106

Query: 61  FFNIQMEENTSVNSHINEITKLINQLASVKITFSDEVNAIQLLTSLPKSWETMKTAVSNS 120
            FN++M EN SV  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWE M+ AVSNS
Sbjct: 107 LFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNS 166

Query: 121 LEDKSLKFSEICDAAIAEKIRREESGKESTSVQKLSIGCRKRYMAESNAVVDDTLVSVAS 180
              + LK+++I D  +AE+IRR ++G+ S S   L++  R R       V D  L++V S
Sbjct: 167 TGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGR-----EEVQDALLLAVDS 226

Query: 181 NTETENQSSEWLIDSSASVHISSNRRLFTSFRRGNHSHVRMWNGRLSKTKGIGNSEF--- 240
             +      +W++DS AS H + +R +  ++  G+   V + +G      G+G+      
Sbjct: 227 PLD------DWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLP 286

Query: 241 GGNQWKLTKGSKLVTIGHRRSTVYTSQL 264
            G+ W L K   +  +  RR+ +   QL
Sbjct: 287 NGSVWLLEKVRHIPDL--RRNLISVGQL 301

[Close]

BLAST of Moc08g37020.1 vs. ExPASy TrEMBL
Match: A0A2N9GH12 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29668 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.8e-33
Identity = 100/291 (34.36%), Postives = 158/291 (54.30%), Query Frame = 0


Query: 1   MKDEDWVETNEQAVAFIRLCM--NVASLVVNETTAIYLMKALENRYKKPLANNKVYLVRR 60
           M+D +W   + Q +  IRL +  +VA  VV ETT + LM AL   Y+KP  NNKV+L+++
Sbjct: 24  MEDAEWALLDRQVLGVIRLTLSKSVAHNVVKETTTVGLMTALSGMYEKPSTNNKVHLMKK 83

Query: 61  FFNIQMEENTSVNSHINEITKLINQLASVKITFSDEVNAIQLLTSLPKSWETMKTAVSNS 120
            FN++M E+ +V  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWE M+ AV+NS
Sbjct: 84  LFNLKMAESATVAKHLNEFNTITNQLSSVEIEFDDEIRALIVLASLPNSWEAMRMAVNNS 143

Query: 121 LEDKSLKFSEICDAAIAEKIRREESGKESTSVQKLSIGCRKRYMAE-----SNAVVDDTL 180
                LK+  I D  ++E++RR ++  ++   Q      R +         +  VVDD  
Sbjct: 144 AGKDKLKYENIRDLILSEEVRRRDACIDNAKGQAFVTENRDKDHKHDDEKGTTVVVDDEK 203

Query: 181 VSVASNTE-----TENQSSEWLIDSSASVHISSNRRLFTSFRRGNHSHVRMWNGRLSKTK 240
           V V S  E      +N   EW+++S+A+ H+  ++ LFT+++ G+   V+M N   SK  
Sbjct: 204 VVVLSVQEQKCEHVDNIDDEWVVNSAATHHVVRSKELFTTYKAGDFGTVKMGNTSYSKIV 263

Query: 241 GIGNSEFGGN------------QWKLTKGSKLVTIGHRRSTVYTSQLSVAR 268
           GIG+     N            +WKL KG  +V  G     +Y +++   +
Sbjct: 264 GIGDVCIKNNVGFTVMLKNANGRWKLAKGPMVVARGRICCGLYRTRVKACK 314

[Close]

BLAST of Moc08g37020.1 vs. ExPASy TrEMBL
Match: A0A2N9GZ72 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35439 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.4e-33
Identity = 106/331 (32.02%), Postives = 167/331 (50.45%), Query Frame = 0


Query: 1   MKDEDWVETNEQAVAFIRLCM--NVASLVVNETTAIYLMKALENRYKKPLANNKVYLVRR 60
           M+D +W   + Q +  IRL +  ++A  VV ETT + LM AL   Y+KP ANNKV+L+++
Sbjct: 47  MEDAEWALLDRQVLGVIRLTLSRSIAHNVVKETTTVGLMTALSGMYEKPSANNKVHLMKK 106

Query: 61  FFNIQMEENTSVNSHINEITKLINQLASVKITFSDEVNAIQLLTSLPKSWETMKTAVSNS 120
            FN++M E  +V  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWE M+ AVSNS
Sbjct: 107 LFNLKMAEGAAVAKHLNEFNTITNQLSSVEIEFDDEIRALIVLASLPNSWEAMRMAVSNS 166

Query: 121 LEDKSLKFSEICDAAIAEKIRREESGKESTSVQKLSIGCRKRYMAE-----SNAVVDDTL 180
                LK+ +I D  ++E++RR ++  ++   Q      R +         + AVVDD  
Sbjct: 167 AGKGKLKYDDIRDLILSEEVRRRDACIDNAEGQAFVTENRDKDHKHDDEKGTTAVVDDEE 226

Query: 181 VSVASNTE-----TENQSSEWLIDSSASVHISSNRRLFTSFRRGNHSHVRMWNGRLSKTK 240
           V V S  E      +N   EW++DS+A+ H+   + LFT+++ G+   V+M N   SK  
Sbjct: 227 VVVLSVQEQKCEHVDNIDDEWVVDSAATHHVVRTKELFTTYKAGDFGTVKMGNTSYSKIV 286

Query: 241 GIGN--------------------------------------SEFGGNQWKLTKGSKLVT 276
           GIG+                                      +  G  +WKL KG  +V 
Sbjct: 287 GIGDVCIKTNVGFTVMLKNVRHVPDLCFNLISTPVMDRAGYCNHLGNGRWKLAKGPMVVA 346

[Close]

BLAST of Moc08g37020.1 vs. ExPASy TrEMBL
Match: A0A803NDX7 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.2e-32
Identity = 97/250 (38.80%), Postives = 142/250 (56.80%), Query Frame = 0


Query: 1   MKDEDWVETNEQAVAFIRLCM--NVASLVVNETTAIYLMKALENRYKKPLANNKVYLVRR 60
           M++ +W   + QA+  IRL +  NVA  +  ETT   LMKAL N Y+KP A+NKV+L+RR
Sbjct: 1   MQEAEWKLLDRQALGVIRLTLSRNVAFNIAKETTTAGLMKALSNMYEKPSASNKVHLMRR 60

Query: 61  FFNIQMEENTSVNSHINEITKLINQLASVKITFSDEVNAIQLLTSLPKSWETMKTAVSNS 120
            F+++M E  SV  H+NE+  +  QL+SV+I F DEV A+ LL+SLP SW    TAVS+S
Sbjct: 61  LFSLRMSEGGSVAQHLNELNSVTTQLSSVEIKFDDEVLALILLSSLPDSWNATVTAVSSS 120

Query: 121 LEDKSLKFSEICDAAIAEKIRREESGKESTSVQKLSIGCRKRYMAESNAVV----DDTLV 180
             +  LKF ++CD  ++E+IRR ESG      ++   G  K   AE+N       DDTL+
Sbjct: 121 SGNNKLKFDDVCDLVLSEEIRRRESGTIKNQCKRTPKG--KEVKAEANVTSTGEGDDTLI 180

Query: 181 SVASNTETENQSSEWLIDSSASVHISSNRRLFTSFRRGNHSHVRMWNGRLSKTKGIGN-- 240
                   E++   W++DS AS H +SN+  F  +   N   V + + +     G  N  
Sbjct: 181 -----CSLESKEESWVLDSGASFHATSNKNFFEKYVHRNLGQVYLGDDQPCDIVGQSNVK 240

Query: 241 SEFGGNQWKL 243
            +  G+ W+L
Sbjct: 241 IKLNGSAWEL 243

[Close]

BLAST of Moc08g37020.1 vs. ExPASy TrEMBL
Match: A0A438HDD3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_926 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-32
Identity = 117/371 (31.54%), Postives = 189/371 (50.94%), Query Frame = 0


Query: 1   MKDEDWVETNEQAVAFIRLCM--NVASLVVNETTAIYLMKALENRYKKPLANNKVYLVRR 60
           MK E+W   + Q +  IRL +  +VA  VV E T   LMKAL   Y+KP ANNKV+L+++
Sbjct: 47  MKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTADLMKALSGMYEKPSANNKVHLMKK 106

Query: 61  FFNIQMEENTSVNSHINEITKLINQLASVKITFSDEVNAIQLLTSLPKSWETMKTAVSNS 120
            FN++M EN SV  H+NE   + NQL+SV+I F DE+ A+ +L SLP SWE M+ AVSNS
Sbjct: 107 LFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEIRALIVLASLPNSWEAMRMAVSNS 166

Query: 121 LEDKSLKFSEICDAAIAEKIRREESGKESTSVQKLSIGCR--------------KRYMAE 180
              + LK+++I D  +AE+IRR ++G+ S S   L++  R              K     
Sbjct: 167 TGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGRGHFKRQCKSPKKKNEDDS 226

Query: 181 SNAVVDDTLVSVASNTETENQSSEWLIDSSASVHISSNRRLFTSFRRGNHSHVRMWNGRL 240
           +NAV ++  V  A     ++   +W++DS AS H + +R +  ++  G+   V + +G  
Sbjct: 227 ANAVTEE--VQDALLLAVDSPLDDWVLDSRASFHTTPHREIIQNYVAGDFGKVYLADGSA 286

Query: 241 SKTKGIGNSEF---GGNQWKLTKGSKLVTIGHRRSTVYTSQLSVARGSLKQWMQVAD--- 300
               G+G+       G+ W L K   +  +  RR+ +   QL    G    ++ VAD   
Sbjct: 287 LDVVGLGDVRISLPNGSIWLLEKVRHIPDL--RRNLISVGQLD-DEGHAILFVGVADAST 346

Query: 301 ---------GVQRREALKIFSRRLEVVAIEALKFSKIIKDYCCSGKQDRCFVSKWEIVGI 341
                    G    + +K+   + ++  ++++ F   + + C  GKQ +    KW+ +  
Sbjct: 347 DTSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFD--MCESCILGKQKK----KWKAMVE 406

The following BLAST results are available for this feature:

BLAST of Moc08g37020.1 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW60263.1	2.9e-33	37.69	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW82472.1	4.2e-32	31.54	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW34240.1	5.5e-32	36.16	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVX07359.1	7.2e-32	36.19	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW73393.1	7.2e-32	35.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Moc08g37020.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	8.0e-18	24.70	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Moc08g37020.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438FJS0	1.4e-33	37.69	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A2N9GH12	1.8e-33	34.36	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29668 PE=4 SV=1	[more]
A0A2N9GZ72	2.4e-33	32.02	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35439 PE=4 SV=1	[more]
A0A803NDX7	1.2e-32	38.80	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A438HDD3	2.0e-32	31.54	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Moc08g37020.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 6..142 e-value: 2.3E-25 score: 89.0
None	No IPR available	PANTHER	PTHR34676:SF1	ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATED	coord: 1..153
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..153

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc08g37020	Moc08g37020	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc08g37020.1.exon1	Moc08g37020.1.exon1	exon
Moc08g37020.1.exon2	Moc08g37020.1.exon2	exon
Moc08g37020.1.exon3	Moc08g37020.1.exon3	exon
Moc08g37020.1.exon4	Moc08g37020.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc08g37020.1	cds.Moc08g37020.1	CDS
cds.Moc08g37020.1	cds.Moc08g37020.1_2	CDS
cds.Moc08g37020.1	cds.Moc08g37020.1_3	CDS
cds.Moc08g37020.1	cds.Moc08g37020.1_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc08g37020.1	Moc08g37020.1-protein	polypeptide