Moc06g15260.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g15260.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Location	chr6: 11971303 .. 11976570 (-)
Sequence length	1500
RNA-Seq Expression	Moc06g15260.1
Synteny	Moc06g15260.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATATAGTGTCTATATCTACTTGTGGCCCAAGGCGTAGAGGACATCATCAAGTAGAGGAGGATGCTCCAATCGAACTTGATGTTCCTATACCTGAAGTTATTTATTATAACGTCGATGACGTTCCACTGTTTACACAGACACAAGATGATGCTAGTCCGTCCACGTCAATAGTCATGAAGCCGACTCCTAGTTCAAGTCAGTAGCACACACCACCTTTGCCACCACAGTTTGGTTATGGGGCCGGTCATGGAAATGGACGAGAGGAGCATGGACAATACATCTACCCTATAGAGGATCGAGAGACACCAGCGGTACCAAAAGTTCGTCGTCAACCACCTAATAATCGACAACATCCCCAATGTGGGACGGATTAGATGGATAGATTGTAAACAGAAATTAATAATTATTTTATCTATATAAACGTAAACTAATATTCTCCAATTTATTATTGTTTTAATTTGCTTTATAATTATTAAAAGATATTGAAGAAAAAATAAAATTTAGTTTATATAATATTATGAGTTTAGTTAAAATAAATTTAATGTGAATAAAATTTAGATTAATATTATGAATTAGTATGTAAATTTAAAAAACAAAATTATTACCATGCAGTGTAGGTGATGTAGTCGTTAATACTATTTTAGTATTTCTAGTTTGTTGGTTGTTTTGGGTTGTTTAATTGTTTGTTAGTTAGTTAGGCTGGTTAGTTAAAACCTTTCCTATGCCTTTTGCTTATAAATAGCAAGTCTTTCCCTTCTAAGGATCATCTTATCTTCCTCAATAAAAATCCTCCCTTTGGAGTTACACCAAATTGGTATCAGAGCGACAAATATCTTGGGCTTCTTTTGGATATGACCGGCAAGAAAGTTATTCCAGCTAAAGGGGATTCTTCTCGTGCCGACAAAGTGGCGGAAAATGCAGCCTTCCTCTCTCCACGATCATTAACCAATCGTTTACTGATGGTTGAAGGTGCTGTAGAGAATTTGCAGCGAAATGTAGTAGAGATTAAGAAAATCTTGAGTGTTTCGGTGGACAAGATTGACAACTTGCAAGAACAGCAAGATCAGCCAAAAAAGAGGAATGGTAAGGATGTTCAAGGTCAATGGGTTGCTGTTGGAAGAGAGGTACAGCAAATAGTTCCAAGAACGTTTCAAGAACCTTTTCCTTTTCAAGAACCCGCTCCTATCCTGCGACGACATCAACCTCAACATGATCCGGCACTTGAACTCCCACAAGATAACCCATGTATGTTCCAAGAACCTTTCCCTGTTCCTTTTCGTTACCCAGAAACCCCTTGGTGTTACAACAATCCACGTCAAAATCATATGACCAACCGACGTAGGGGTGCTCCATTTGAGTCCTCTAGTGATGATGATGAGTATCAAGAATGGGAAACGAATCACAGGGGCAACCAACGACATAATCAAAGGTATCAAGAACCTAACGATTATAAAATGAAAGTGGACCTACCTGTTTTTTATGGTAAACTTGATATCGAGGGGTTTCTTGAATGGATTAAAAGTGTGGAGAGTTTTTTAGGTTATATGAATACCCTTGATCATAAAAAAATTCGACCTTGTCACTTTAAAGCTAAAAGGAGAGGCTTCCGCTTGGTGGGAGCAGTTAGAGACAAATCGGCAAAGGTTTGGAAAACACCCCATAAGAACATGGGAAAAAATGAGGAATTAATGAGAGCACGATTTTTTCCTATTAACTATGAGTAGGTTTTATACAATCAGTACCACAATTGTAGGCAGGGGAGTAGGGGCCAGAACAAATTTAGGGGAAAATGACCAATACCAAGTGGCACGGTTCGTAGGAGGCCTCCGGACTAACATCAAAGAGCGGCTACAAGTGCAACCCATTGGATTCTTGGATGAAGCCATTACCACAGCTATCACTATTGAAGAACAAATTGGCAATCGGTTTAAGTACCAATATCAGCGGTGCTCTACTGATACTAATGCCGCTGGATTCAAGAAGAGAACAACAATAGTGGATAAACCTTTAAACCAAGGTATGGCTTCTAGCTCTAAAACTAAGGGCAGTGATGATGCTAAAGTAGGGGATCAAAACAAAAAAAAAAACTTAACAAAACTTATGGCCGGCCCACACTGGGAAAATGCTTTCACTGTGGCCAGGTGGGCCATTTGTCCAATGAGTGCCCTCAAAGGAAGACAATCAATTTCGTGGAAGATGGTGACAGTCTTGATCACGATATTGATATCATTGTGGATGAGGAACGTTTAGTGGTTGAACTCGACGAGGGTGATCTTGTTTCCTGTGTTCTAGAACGTGTCCTCCTCACACCTAAAATCATTTCATTTCCTCAACGCCACTTCTTGTTTAGAACCCGCTGTACTATCAACGGGAAAGTATGCAATGTTATCATAGATAGTGGTAGCACCGAAAACATTGTTTCTACCAAGTTAGTAAATGCCCTAAACTTGAAAGTTTCTCCTCATCCAACCTCATACAAGATTAGTTGGATTAAAAAAGGAGGAAAAGCACAAGTTACTTCTATATGCACAATCCCTTTATCCATCAGAAACAACTATAAGGATCAAATAATTTGCGACCTATTAGAGGATGTATGTCACATCTTATTGGGTAGACCTTGGCAATATGACACTCAAGCAATACATAAAGGCTACGATAATATATACGAATTTCTATGGATGGGCAGAACAGTAGTTTTGATTCCTCTACATGGGGCTAACGTTGCAAGTGATGAAGGGAAAGAACAATTGTTTCACCTAGCTAAAGGGAAACAGTTTCTTGTCCCATCTAACCAACTAATTCTTGGTTTGGTCATCAAGGACTTTAACCCTACAAATACCACCAACTTTTCAGACATTCCCTCAGAAATAACAACTTTACTGACCAAATTCCCAGATATCTCCACACTACCAGACCAATTACCTCATCTCTGAAATATTCAGCATCATATTGACCTCATACTAAGGGCTACATTGCCTAATTTGTCTCATTATCGCATGAGCCCAGCTGAATATAAAATTCTTCATGAACAAATAACCAAATTATTGGACAAAGGCTATATTCAACCTAGCTTAAGTCCTTATGTGGTGCCCACCCTCCTCACCCCAAAAAAGGATGGGTCGTGGCGGATGTGTGTTGATAGTCGAGCTATCAACACAATAACCATTAAGTATCATTTCCATATCCCTCGTATTAATGACTTATTTGACCAACTAGGAGGAGCATTCATCTTCTCTAAAATAGACTTGCGTAGCAGATATCATCAAATACACATCAGACTAGGAGATGAACGGAAGACAACCCTCAAAACAAATGAAGGACTGTTCGAGTGGCTAGTCATGCCCTTCAGGTTATCCAATGCCTCGAGCACTTTCATGAGGTTAATGCATCAGGTTTTTCTCCCTTTTCTTAATAAATTTGTGGTTATATATTTTGATGATATTATGATTTATAGTAATTCTAGGGAAGACCATTTACATCACCTTCAACTTCTATTTACTACACTTAGTAATAACAAATTAGCGATAAACTTGAAAAAAATGTATGTTTCTTGTTTCTGAAATGTCATTCCTAGGATTCATTATTAGTGGGAAGGGCATTCAAATGGACCCTAAGAAAATAAAAGCTATAATGACTGGCCTCAACCTAAAACAGTAAGGGATATTCAATGTTTTTTTGGCATTGCATCCTTCTATAGGAAATTCATCCGAAATTTTAGCTCCCTAGTGGCCCCCTTAACCAACTGTCTCAAAAAAGGAAAATTTTCTTGGGGTATTGACCAAACAAACAACTTTGAAACTATACAAAAAAAACTTAGCGAAAGTCATGTTCTTAATTTACCCGATTTCACCTAGTCATTTGAAGTTTCAGTAGATGCTTCTGGAGTAGGTATACGGGCTGTTTTATTTCAGAACAATCACCCCATCGAATACTTTAGTGAAAAACTAAGCCCTTCACGACAAAATTGGAGCAGCTACGAACAAAAACTCTACGCTTTGGTTCGTGTTCTTAAGCAATGGGAGCATTATCTTTTAAGCAAAGAATTCATACTCTTTACTGATCATTTTTCCCTTAAATTCCTTAATACTCAAAAAATCGTAAGCCGAATGCATGCAAGATGGTTGTCTTTTCTTCAAAGATTTGACTTTGTTATAAAACATAGAACGAGGATTACTAATAAGCCAGCCGACACCCTTAGTAGAAAGGGAAACTTACTAACAATCCTACAAGGAGAAATAATAGCCTTCACCACTTTACCCGAGTCATACACCACAGATATAGACTTTAAAGAAATTTGGCATAACTGCTCTACGAACAATAACTCTAAAGACTTTCACGTTTTAGAAGGATAATTATTCAAAGGTAATCAATTATGTATACCCCATGCATCTCTACGGACAACACTTATTCAAGACCTACATTCAAGTGGGTATTCAAGTGGGTTAGCAGGCCACTTTGGTTGGGATAAAATCTTAAACTTAGTAGCTAATAGTTTTTTTTTTTTTTTTGCTACAAATAAGAAAAGATGTCTTCAGCTACATAGCCAAATGTTTTGTATGCCAAACAAATAAACGAACAACCCAAAACACAGGACTCTACACTCCTTTACCTATACCTCAATCAATTTGGGAAGACCTATCCATGGATTTTATCTTAGGATTACCCAAAACACAACGAGGATTCGATTCAGTCTTGGTTGTTGTCGATCGTTTCAGCAAAATGGCACATTTTTAAGCTTGTAAGAAAACATCAAATGATGTTTATGTGGGTAATCTTTTTTTTTCAGGAAGTGGTTCGACTTCACGACATTCCTAAAATAATAGTTTCAGATCATGATGTCAAATTTCTTAGCCATTTCTGGTGAACTCTGTGGCGCAAATTTTATACATCCCTCAAATACAGCACCACAAGTCACCCACAAACGGACAAACAAACAAAAGTTACAAACAGAACTCTAGGAAACCTAATTTGATGCCTATCCCAGCGATCGTCCTAAACAATGGGACCTTGCCCTTGCATAAGCAGAATTCGCTTTCAATCATATGTAAAATAGATCCACGGGGAAGTCACCATTTGAAGTGGTTTATACTAAACTCCCTCGCCTAACTGTAGATGTTACTAACTTACCATCTTCTATTGATGTTAGTGTGGAAGTTGAACAAATGGCAAAAAGGATAACAAAATTGCATCAAGAAGTCCGTGATCATATCGAGACGGCAACTCCAAGTATAAGGCAGCAGCAGATACTAAAAGAAGACCAGTGA

mRNA sequence

ATGTATATAGTGTCTATATCTACTTGTGGCCCAAGGCGTAGAGGACATCATCAAGTAGAGGAGGATGCTCCAATCGAACTTGATGTTCCTATACCTGAAGTTATTTATTATAACGTCGATGACGTTCCACTGTTTACACAGACACAAGATGATGCTAGTCCGTCCACGTCAATAGTCATGAAGCCGACTCCTAGTTCAAGTCACAAGTCTTTCCCTTCTAAGGATCATCTTATCTTCCTCAATAAAAATCCTCCCTTTGGAGTTACACCAAATTGGTATCAGAGCGACAAATATCTTGGGCTTCTTTTGGATATGACCGGCAAGAAAGTTATTCCAGCTAAAGGGGATTCTTCTCGTGCCGACAAAGTGGCGGAAAATGCAGCCTTCCTCTCTCCACGATCATTAACCAATCGTTTACTGATGGTTGAAGGTGCTGTAGAGAATTTGCAGCGAAATGTAGTAGAGATTAAGAAAATCTTGAGTGTTTCGGTGGACAAGATTGACAACTTGCAAGAACAGCAAGATCAGCCAAAAAAGAGGAATGGTAAGGATGTTCAAGGTCAATGGGTTGCTGTTGGAAGAGAGGTACAGCAAATAGTTCCAAGAACGTTTCAAGAACCTTTTCCTTTTCAAGAACCCGCTCCTATCCTGCGACGACATCAACCTCAACATGATCCGGCACTTGAACTCCCACAAGATAACCCATGTATGTTCCAAGAACCTTTCCCTGTTCCTTTTCGTTACCCAGAAACCCCTTGGTGTTACAACAATCCACGTCAAAATCATATGACCAACCGACGTAGGGGTGCTCCATTTGAGTCCTCTAGTGATGATGATGAGTATCAAGAATGGGAAACGAATCACAGGGGCAACCAACGACATAATCAAAGGGGAGTAGGGGCCAGAACAAATTTAGGGGAAAATGACCAATACCAAGTGGCACGGTTCGTAGGAGGCCTCCGGACTAACATCAAAGAGCGGCTACAAGTGCAACCCATTGGATTCTTGGATGAAGCCATTACCACAGCTATCACTATTGAAGAACAAATTGGCAATCGGTTTAAGTACCAATATCAGCGGTGCTCTACTGATACTAATGCCGCTGGATTCAAGAAGAGAACAACAATAGTGGATAAACCTTTAAACCAAGGTATGGCTTCTAGCTCTAAAACTAAGGGCAGTGATGATGCTAAAGTGGGCCATTTGTCCAATGAGTGCCCTCAAAGGAAGACAATCAATTTCGTGGAAGATGGTGACAGTCTTGATCACGATATTGATATCATTGTGGATGAGGAACGTTTAGTGGTTGAACTCGACGAGGGTGATCTTGTTTCCTGTGTTCTAGAACATGTTACTAACTTACCATCTTCTATTGATGTTAGTGTGGAAGTTGAACAAATGGCAAAAAGGATAACAAAATTGCATCAAGAAGTCCGTGATCATATCGAGACGGCAACTCCAAGTATAAGGCAGCAGCAGATACTAAAAGAAGACCAGTGA

Coding sequence (CDS)

ATGTATATAGTGTCTATATCTACTTGTGGCCCAAGGCGTAGAGGACATCATCAAGTAGAGGAGGATGCTCCAATCGAACTTGATGTTCCTATACCTGAAGTTATTTATTATAACGTCGATGACGTTCCACTGTTTACACAGACACAAGATGATGCTAGTCCGTCCACGTCAATAGTCATGAAGCCGACTCCTAGTTCAAGTCACAAGTCTTTCCCTTCTAAGGATCATCTTATCTTCCTCAATAAAAATCCTCCCTTTGGAGTTACACCAAATTGGTATCAGAGCGACAAATATCTTGGGCTTCTTTTGGATATGACCGGCAAGAAAGTTATTCCAGCTAAAGGGGATTCTTCTCGTGCCGACAAAGTGGCGGAAAATGCAGCCTTCCTCTCTCCACGATCATTAACCAATCGTTTACTGATGGTTGAAGGTGCTGTAGAGAATTTGCAGCGAAATGTAGTAGAGATTAAGAAAATCTTGAGTGTTTCGGTGGACAAGATTGACAACTTGCAAGAACAGCAAGATCAGCCAAAAAAGAGGAATGGTAAGGATGTTCAAGGTCAATGGGTTGCTGTTGGAAGAGAGGTACAGCAAATAGTTCCAAGAACGTTTCAAGAACCTTTTCCTTTTCAAGAACCCGCTCCTATCCTGCGACGACATCAACCTCAACATGATCCGGCACTTGAACTCCCACAAGATAACCCATGTATGTTCCAAGAACCTTTCCCTGTTCCTTTTCGTTACCCAGAAACCCCTTGGTGTTACAACAATCCACGTCAAAATCATATGACCAACCGACGTAGGGGTGCTCCATTTGAGTCCTCTAGTGATGATGATGAGTATCAAGAATGGGAAACGAATCACAGGGGCAACCAACGACATAATCAAAGGGGAGTAGGGGCCAGAACAAATTTAGGGGAAAATGACCAATACCAAGTGGCACGGTTCGTAGGAGGCCTCCGGACTAACATCAAAGAGCGGCTACAAGTGCAACCCATTGGATTCTTGGATGAAGCCATTACCACAGCTATCACTATTGAAGAACAAATTGGCAATCGGTTTAAGTACCAATATCAGCGGTGCTCTACTGATACTAATGCCGCTGGATTCAAGAAGAGAACAACAATAGTGGATAAACCTTTAAACCAAGGTATGGCTTCTAGCTCTAAAACTAAGGGCAGTGATGATGCTAAAGTGGGCCATTTGTCCAATGAGTGCCCTCAAAGGAAGACAATCAATTTCGTGGAAGATGGTGACAGTCTTGATCACGATATTGATATCATTGTGGATGAGGAACGTTTAGTGGTTGAACTCGACGAGGGTGATCTTGTTTCCTGTGTTCTAGAACATGTTACTAACTTACCATCTTCTATTGATGTTAGTGTGGAAGTTGAACAAATGGCAAAAAGGATAACAAAATTGCATCAAGAAGTCCGTGATCATATCGAGACGGCAACTCCAAGTATAAGGCAGCAGCAGATACTAAAAGAAGACCAGTGA

Protein sequence

MYIVSISTCGPRRRGHHQVEEDAPIELDVPIPEVIYYNVDDVPLFTQTQDDASPSTSIVMKPTPSSSHKSFPSKDHLIFLNKNPPFGVTPNWYQSDKYLGLLLDMTGKKVIPAKGDSSRADKVAENAAFLSPRSLTNRLLMVEGAVENLQRNVVEIKKILSVSVDKIDNLQEQQDQPKKRNGKDVQGQWVAVGREVQQIVPRTFQEPFPFQEPAPILRRHQPQHDPALELPQDNPCMFQEPFPVPFRYPETPWCYNNPRQNHMTNRRRGAPFESSSDDDEYQEWETNHRGNQRHNQRGVGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFKKRTTIVDKPLNQGMASSSKTKGSDDAKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHVTNLPSSIDVSVEVEQMAKRITKLHQEVRDHIETATPSIRQQQILKEDQ

Homology

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BLAST of Moc06g15260.1 vs. NCBI nr
Match: XP_031745468.1 (uncharacterized protein LOC116405837 [Cucumis sativus] >XP_031745508.1 uncharacterized protein LOC116405854 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 1.6e-19
Identity = 70/182 (38.46%), Postives = 98/182 (53.85%), Query Frame = 0


Query: 299 VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQY 358
           + ARTNL EN+Q+QVARFVGGLR +IKE++++QP  FL EAI+ A T+EE I  R K   
Sbjct: 42  LSARTNLSENEQHQVARFVGGLRFDIKEKVRLQPFRFLSEAISFAETVEEMIAIRSKNLN 101

Query: 359 QRCSTDTNAAGFK-----------------KRTTIVDKPLNQGMASSSKTKGSDDA---- 418
           +R + +TN+   K                  +   V++   Q    S +   S  +    
Sbjct: 102 RRSAWETNSTKSKTNDQPSTSTKAKGKEIDNQEVAVERKKEQTFKPSGQNNYSRPSLGKC 161

Query: 419 ----KVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHVTN 456
               + GHLSN CPQRKTI   EDG     D  I  +EE  ++E D+G+ VSCV++ +  
Sbjct: 162 FRCGQTGHLSNNCPQRKTIAIAEDGGQTSED-SIEAEEETELIEADDGERVSCVIQRLLI 221

[Close]

BLAST of Moc06g15260.1 vs. NCBI nr
Match: XP_031743026.1 (uncharacterized protein LOC116404533 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 4.6e-19
Identity = 69/182 (37.91%), Postives = 98/182 (53.85%), Query Frame = 0


Query: 299 VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQY 358
           + ARTNL EN+Q+QVARFVGGLR +IKE++++QP  FL EAI+ A T+EE I  R K   
Sbjct: 287 LSARTNLSENEQHQVARFVGGLRFDIKEKVRLQPFRFLSEAISFAETVEEMIAIRSKNLN 346

Query: 359 QRCSTDTNAAGFK-----------------KRTTIVDKPLNQGMASSSKTKGSDDA---- 418
           +R + +TN+   K                  +   V++   Q    S +   S  +    
Sbjct: 347 RRSAWETNSTKSKTNDQPSTSTKAKGKEIDNQEVAVERKKEQTFKPSGQNNYSRPSLGKC 406

Query: 419 ----KVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHVTN 456
               + GHLSN CPQRKTI   E+G     D  I  +EE  ++E D+G+ VSCV++ +  
Sbjct: 407 FRCGQTGHLSNNCPQRKTIAIAEEGGQTSED-SIEAEEETELIEADDGERVSCVIQRLLI 466

[Close]

BLAST of Moc06g15260.1 vs. NCBI nr
Match: XP_031741035.1 (uncharacterized protein LOC116403692 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 7.8e-19
Identity = 68/182 (37.36%), Postives = 99/182 (54.40%), Query Frame = 0


Query: 299 VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQY 358
           + ARTNL EN+Q+QVARFVGGLR +IKE++++QP  FL EAI+ A T+EE I  R K   
Sbjct: 287 LSARTNLSENEQHQVARFVGGLRFDIKEKVRLQPFRFLSEAISFAETVEEMIAIRSKNLN 346

Query: 359 QRCSTDTNAAGFK-----------------KRTTIVDKPLNQGMASSSKTKGSDDA---- 418
           +R + +TN+   K                  +   V++   Q    S +   S  +    
Sbjct: 347 RRSAWETNSTKSKTNDQPSTSTKAKGKEIDNQEVAVERKKEQTFKPSGQNSYSRPSLGKC 406

Query: 419 ----KVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHVTN 456
               + GHLS+ CPQRKTI   E+G  +  D  I  +EE  ++E D+G+ VSCV++ +  
Sbjct: 407 FRCGQTGHLSDNCPQRKTIAIAEEGGQISED-SIEAEEETELIEADDGERVSCVIQRLLI 466

[Close]

BLAST of Moc06g15260.1 vs. NCBI nr
Match: XP_022138328.1 (uncharacterized protein LOC111009540 isoform X2 [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 6.6e-18
Identity = 66/185 (35.68%), Postives = 97/185 (52.43%), Query Frame = 0


Query: 299 VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQY 358
           +GA+TN+ E + Y++ARFV GLR +I++++ +QPI  L +AI  A  IE++   R +   
Sbjct: 262 LGAKTNIAETEDYKIARFVDGLREDIQDQMDIQPIHLLTDAIVMATKIEDK--KRLRTPA 321

Query: 359 QRCSTDTNAAGFKKRTTIVDKPLNQGMASSSKTKGSDD---------------------- 418
           +R   D  +   K  TT   KPL  G  S+S TK  DD                      
Sbjct: 322 RRTPWDKPSIS-KTATTDTGKPLQIGTTSASTTKPPDDPAKSSPFKTPDTSSKRGTNPYI 381

Query: 419 ----------AKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSC 452
                      +V HLSNECPQR+ +  V+  D L+ DID+  +++   VE DEGDL+SC
Sbjct: 382 RPTLGKCFRCGQVDHLSNECPQRRALALVDQDDLLETDIDLPTEDDPTYVEPDEGDLLSC 441

[Close]

BLAST of Moc06g15260.1 vs. NCBI nr
Match: XP_022138327.1 (uncharacterized protein LOC111009540 isoform X1 [Momordica charantia])

HSP 1 Score: 103.2 bits (256), Expect = 6.6e-18
Identity = 66/185 (35.68%), Postives = 97/185 (52.43%), Query Frame = 0


Query: 299 VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQY 358
           +GA+TN+ E + Y++ARFV GLR +I++++ +QPI  L +AI  A  IE++   R +   
Sbjct: 262 LGAKTNIAETEDYKIARFVDGLREDIQDQMDIQPIHLLTDAIVMATKIEDK--KRLRTPA 321

Query: 359 QRCSTDTNAAGFKKRTTIVDKPLNQGMASSSKTKGSDD---------------------- 418
           +R   D  +   K  TT   KPL  G  S+S TK  DD                      
Sbjct: 322 RRTPWDKPSIS-KTATTDTGKPLQIGTTSASTTKPPDDPAKSSPFKTPDTSSKRGTNPYI 381

Query: 419 ----------AKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSC 452
                      +V HLSNECPQR+ +  V+  D L+ DID+  +++   VE DEGDL+SC
Sbjct: 382 RPTLGKCFRCGQVDHLSNECPQRRALALVDQDDLLETDIDLPTEDDPTYVEPDEGDLLSC 441

[Close]

BLAST of Moc06g15260.1 vs. ExPASy TrEMBL
Match: A0A6J1CCQ8 (uncharacterized protein LOC111009540 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009540 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.2e-18
Identity = 66/185 (35.68%), Postives = 97/185 (52.43%), Query Frame = 0


Query: 299 VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQY 358
           +GA+TN+ E + Y++ARFV GLR +I++++ +QPI  L +AI  A  IE++   R +   
Sbjct: 262 LGAKTNIAETEDYKIARFVDGLREDIQDQMDIQPIHLLTDAIVMATKIEDK--KRLRTPA 321

Query: 359 QRCSTDTNAAGFKKRTTIVDKPLNQGMASSSKTKGSDD---------------------- 418
           +R   D  +   K  TT   KPL  G  S+S TK  DD                      
Sbjct: 322 RRTPWDKPSIS-KTATTDTGKPLQIGTTSASTTKPPDDPAKSSPFKTPDTSSKRGTNPYI 381

Query: 419 ----------AKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSC 452
                      +V HLSNECPQR+ +  V+  D L+ DID+  +++   VE DEGDL+SC
Sbjct: 382 RPTLGKCFRCGQVDHLSNECPQRRALALVDQDDLLETDIDLPTEDDPTYVEPDEGDLLSC 441

[Close]

BLAST of Moc06g15260.1 vs. ExPASy TrEMBL
Match: A0A6J1CAS9 (uncharacterized protein LOC111009540 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009540 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.2e-18
Identity = 66/185 (35.68%), Postives = 97/185 (52.43%), Query Frame = 0


Query: 299 VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQY 358
           +GA+TN+ E + Y++ARFV GLR +I++++ +QPI  L +AI  A  IE++   R +   
Sbjct: 262 LGAKTNIAETEDYKIARFVDGLREDIQDQMDIQPIHLLTDAIVMATKIEDK--KRLRTPA 321

Query: 359 QRCSTDTNAAGFKKRTTIVDKPLNQGMASSSKTKGSDD---------------------- 418
           +R   D  +   K  TT   KPL  G  S+S TK  DD                      
Sbjct: 322 RRTPWDKPSIS-KTATTDTGKPLQIGTTSASTTKPPDDPAKSSPFKTPDTSSKRGTNPYI 381

Query: 419 ----------AKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSC 452
                      +V HLSNECPQR+ +  V+  D L+ DID+  +++   VE DEGDL+SC
Sbjct: 382 RPTLGKCFRCGQVDHLSNECPQRRALALVDQDDLLETDIDLPTEDDPTYVEPDEGDLLSC 441

[Close]

BLAST of Moc06g15260.1 vs. ExPASy TrEMBL
Match: A0A5D3DGR0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00870 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.3e-18
Identity = 68/180 (37.78%), Postives = 96/180 (53.33%), Query Frame = 0


Query: 299 VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQY 358
           +G RTNL E +++ ++ FVGGLR ++KE++++QP   L EAIT A T+EE I NR K   
Sbjct: 272 LGGRTNLMEGEKHLISWFVGGLRFDLKEKVKLQPFQHLSEAITYAETVEEMIENRAKSTR 331

Query: 359 QR-----CSTDTNAAGFKKRTTIVDKPLNQGMASSSK------TKGSDD----------- 418
           +R      S  T A   K +    +KP+ Q  +S  K       KG +            
Sbjct: 332 KRPWEPSASKKTTAGNSKLKNATSEKPVEQEESSGKKEVPEGEKKGKNPYQRPFSGNCYR 391

Query: 419 -AKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEHVTNLP 456
             ++GH SN+CPQRKTI   +D D   +      DEE  V+E DEGD +SC+L+ V   P
Sbjct: 392 CGQMGHPSNQCPQRKTIAVAKDNDDGSNRSLGEFDEETEVIEADEGDSLSCILQRVLISP 451

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BLAST of Moc06g15260.1 vs. ExPASy TrEMBL
Match: A0A5D3E417 (Transposon Ty3-I Gag-Pol polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00630 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.0e-16
Identity = 66/185 (35.68%), Postives = 101/185 (54.59%), Query Frame = 0


Query: 299 VGARTNLGENDQYQVARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQY 358
           +GAR NL EN+Q+Q+ARF+GGLR +IKE++++     L EAI+ A T+EE +  R K   
Sbjct: 215 LGARINLSENEQHQIARFIGGLRFDIKEKVKLHSFRVLSEAISLAETVEEMMTVRLKNSN 274

Query: 359 QRCSTDTNAA---GFKKR------TTIVDK--------------PLNQGMASSSKTKGS- 418
           +R + +TN +    + K+      T++VDK               L +G   ++ T+ S 
Sbjct: 275 RRTAWETNPSKKQSYGKKTDEQPSTSMVDKGKAIDIQETNKKKESLVRGKTQNNYTRPSL 334

Query: 419 ----DDAKVGHLSNECPQRKTINFVEDGDSLDHDIDIIVDEERLVVELDEGDLVSCVLEH 456
                  + GHLSN C QRKTI   ED D+     D   +EE  ++E D+GD +SC+++ 
Sbjct: 335 GKCFRCGEPGHLSNNCSQRKTIALAEDEDTYMSGTDEEEEEETELIEADDGDRISCIVQR 394

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BLAST of Moc06g15260.1 vs. ExPASy TrEMBL
Match: A0A5D3C3X9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00540 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-16
Identity = 103/393 (26.21%), Postives = 181/393 (46.06%), Query Frame = 0


Query: 95  SDKYLGLLLDMTGKKVIPAKGDSSRADKVAENAAFLSPRSLTNRLLMVEGAVENLQRNVV 154
           ++K+LG    MT ++  P   +    ++ AE    LSP++ + RLL +E +VE ++  + 
Sbjct: 89  AEKFLG---QMTVRRDNPEAAEQFAQNQEAEENPVLSPKTTSRRLLSMEASVERIENTLQ 148

Query: 155 EIKKILSVSVDKIDNLQEQQDQPKKRNGKDVQGQWV---AVGREVQQIVPRTFQEPF-PF 214
            + + L       +  QE Q++ +    + ++G  +    +  +  +   +  + PF  +
Sbjct: 149 VVLQRLEALTPPQNVHQEDQERVRDWGQRGIRGAGIRRAEINHQESRYDVQERRRPFQDY 208

Query: 215 QEPAPILRRHQPQHDPALELPQDNPCMFQEP-------FPVPFRYPETPWCYNNPRQNHM 274
           Q P P   R+Q  +    +    +  + + P       F   F         +  + +  
Sbjct: 209 QNPFP---RNQEMYQEPQDWSSSDDELQERPIFNQNRGFRPQFDERRRELAESKMKIDLP 268

Query: 275 TNRRRGAPFES------SSDDDEYQEWETNHRGNQR-----HNQRGVGARTNLGENDQYQ 334
           +   + +PF S      S D   Y +++   +G +           +GAR NL EN+Q+Q
Sbjct: 269 SYDGKESPFSSIKAEGWSVDMTLYSQYQNCRQGTRTVADYIKEFHHLGARINLSENEQHQ 328

Query: 335 VARFVGGLRTNIKERLQVQPIGFLDEAITTAITIEEQIGNRFKYQYQRCSTDTNAAGFKK 394
           +ARF+GGLR +IKE++++QP  FL EAI+ A T+EE    R K      ST T   G + 
Sbjct: 329 IARFIGGLRFDIKEKIKLQPFRFLSEAISFAETVEEMNAIRTK----NPSTSTQGKGKEV 388

Query: 395 RTTIV--DKP---LNQGMASSSKTKGS-----DDAKVGHLSNECPQRKTINFVEDGDSLD 454
            T  +  DK    +N+G   +   + S        + GH SN CPQRKTI   +  +   
Sbjct: 389 ETQDLADDKKREVVNKGKVQNKYNRPSLGKCFRCGQPGHPSNTCPQRKTIALADKEEDSA 448

Query: 455 HDIDIIVDEERLVVELDEGDLVSCVLEHVTNLP 456
            +    ++EE  ++E D+G  VSCV++ V   P
Sbjct: 449 SESSEELEEEAKLIEADDGHRVSCVIQRVLLAP 471

The following BLAST results are available for this feature:

BLAST of Moc06g15260.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745468.1	1.6e-19	38.46	uncharacterized protein LOC116405837 [Cucumis sativus] >XP_031745508.1 uncharact...	[more]
XP_031743026.1	4.6e-19	37.91	uncharacterized protein LOC116404533 [Cucumis sativus]	[more]
XP_031741035.1	7.8e-19	37.36	uncharacterized protein LOC116403692 [Cucumis sativus]	[more]
XP_022138328.1	6.6e-18	35.68	uncharacterized protein LOC111009540 isoform X2 [Momordica charantia]	[more]
XP_022138327.1	6.6e-18	35.68	uncharacterized protein LOC111009540 isoform X1 [Momordica charantia]	[more]

BLAST of Moc06g15260.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g15260.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CCQ8	3.2e-18	35.68	uncharacterized protein LOC111009540 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CAS9	3.2e-18	35.68	uncharacterized protein LOC111009540 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A5D3DGR0	9.3e-18	37.78	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3E417	1.0e-16	35.68	Transposon Ty3-I Gag-Pol polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3C3X9	2.3e-16	26.21	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13...	[more]

BLAST of Moc06g15260.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 383..402
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..69

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc06g15260	Moc06g15260	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc06g15260.1.exon5	Moc06g15260.1.exon5	exon
Moc06g15260.1.exon4	Moc06g15260.1.exon4	exon
Moc06g15260.1.exon3	Moc06g15260.1.exon3	exon
Moc06g15260.1.exon2	Moc06g15260.1.exon2	exon
Moc06g15260.1.exon1	Moc06g15260.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc06g15260.1	cds.Moc06g15260.1_5	CDS
cds.Moc06g15260.1	cds.Moc06g15260.1_4	CDS
cds.Moc06g15260.1	cds.Moc06g15260.1_3	CDS
cds.Moc06g15260.1	cds.Moc06g15260.1_2	CDS
cds.Moc06g15260.1	cds.Moc06g15260.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc06g15260.1	Moc06g15260.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048507	meristem development
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003676	nucleic acid binding