|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAATCGAGATATAATAGGGATCTCTCTTGCTGTTGTGGAGGTGATTTTTGGAGAAGATCCTTCTTTCCCGCTAGTTTTTGTGATTGTGGATGGTAGCCATGTGTCGGGGATCTCCCTGTTGGATGTCGATAGTGCTATTGCGACTGACAAAATCAAATGCAACATTAATGTTACGTATGGTCCGTGGCTTCATCATCAGACAGTTTTGAAGAGTTATCAGGCACAAAATTGGAGAGTGCACCCGCCTGCTATTTCTTGGGATAACTCTTCATCTTTGTTGCATCCTAATCTAGAGAACTTCCATGTTCCACGGGAAAGGATGACAGAGCAAAAGGTGGGCGACGACGAAGCTGTGGCCGTGATCAGCTCGAACACCGTTTTGAAATCTATGTAG mRNA sequence ATGAATCGAGATATAATAGGGATCTCTCTTGCTGTTGTGGAGGTGATTTTTGGAGAAGATCCTTCTTTCCCGCTAGTTTTTGTGATTGTGGATGGTAGCCATGTGTCGGGGATCTCCCTGTTGGATGTCGATAGTGCTATTGCGACTGACAAAATCAAATGCAACATTAATGTTACGTATGGTCCGTGGCTTCATCATCAGACAGTTTTGAAGAGTTATCAGGCACAAAATTGGAGAGTGCACCCGCCTGCTATTTCTTGGGATAACTCTTCATCTTTGTTGCATCCTAATCTAGAGAACTTCCATGTTCCACGGGAAAGGATGACAGAGCAAAAGGTGGGCGACGACGAAGCTGTGGCCGTGATCAGCTCGAACACCGTTTTGAAATCTATGTAG Coding sequence (CDS) ATGAATCGAGATATAATAGGGATCTCTCTTGCTGTTGTGGAGGTGATTTTTGGAGAAGATCCTTCTTTCCCGCTAGTTTTTGTGATTGTGGATGGTAGCCATGTGTCGGGGATCTCCCTGTTGGATGTCGATAGTGCTATTGCGACTGACAAAATCAAATGCAACATTAATGTTACGTATGGTCCGTGGCTTCATCATCAGACAGTTTTGAAGAGTTATCAGGCACAAAATTGGAGAGTGCACCCGCCTGCTATTTCTTGGGATAACTCTTCATCTTTGTTGCATCCTAATCTAGAGAACTTCCATGTTCCACGGGAAAGGATGACAGAGCAAAAGGTGGGCGACGACGAAGCTGTGGCCGTGATCAGCTCGAACACCGTTTTGAAATCTATGTAG Protein sequence MNRDIIGISLAVVEVIFGEDPSFPLVFVIVDGSHVSGISLLDVDSAIATDKIKCNINVTYGPWLHHQTVLKSYQAQNWRVHPPAISWDNSSSLLHPNLENFHVPRERMTEQKVGDDEAVAVISSNTVLKSM
Homology
BLAST of Moc03g21250.1 vs. NCBI nr
Match: XP_022159860.1 (uncharacterized protein LOC111026150 [Momordica charantia]) HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09 Identity = 46/103 (44.66%), Postives = 51/103 (49.51%), Query Frame = 0
Query: 29 IVDGSHVSGISLLDVDSAIATDKIKCNINVTYGPWLHHQTVLKSYQAQNWRVHPPAISWD 88
+ D +S IS LD +SA+ DKIK NI V YGPW H VLKSY AQNW
Sbjct: 1 MADSDWMSEISPLDANSAVVVDKIKANI-VMYGPWHRHHDVLKSYHAQNW---------- 60
Query: 89 NSSSLLHPNLENFHVPRERMTEQKVGDDEAVAVISSNTVLKSM 132
RM EQKVGDD A I SNTVL S+
Sbjct: 61 -----------------TRMMEQKVGDDGGAATIKSNTVLGSV 75
BLAST of Moc03g21250.1 vs. ExPASy TrEMBL
Match: A0A6J1DZZ2 (uncharacterized protein LOC111026150 OS=Momordica charantia OX=3673 GN=LOC111026150 PE=4 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 5.4e-10 Identity = 46/103 (44.66%), Postives = 51/103 (49.51%), Query Frame = 0
Query: 29 IVDGSHVSGISLLDVDSAIATDKIKCNINVTYGPWLHHQTVLKSYQAQNWRVHPPAISWD 88
+ D +S IS LD +SA+ DKIK NI V YGPW H VLKSY AQNW
Sbjct: 1 MADSDWMSEISPLDANSAVVVDKIKANI-VMYGPWHRHHDVLKSYHAQNW---------- 60
Query: 89 NSSSLLHPNLENFHVPRERMTEQKVGDDEAVAVISSNTVLKSM 132
RM EQKVGDD A I SNTVL S+
Sbjct: 61 -----------------TRMMEQKVGDDGGAATIKSNTVLGSV 75
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022159860.1 | 1.1e-09 | 44.66 | uncharacterized protein LOC111026150 [Momordica charantia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1DZZ2 | 5.4e-10 | 44.66 | uncharacterized protein LOC111026150 OS=Momordica charantia OX=3673 GN=LOC111026... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Moc03g21250.1.exon1 | Moc03g21250.1.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| cds.Moc03g21250.1 | cds.Moc03g21250.1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Moc03g21250.1 | Moc03g21250.1-protein | polypeptide |
|
