Moc03g21250 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc03g21250
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr3: 14524160 .. 14524555 (-)
RNA-Seq ExpressionMoc03g21250
SyntenyMoc03g21250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGAGATATAATAGGGATCTCTCTTGCTGTTGTGGAGGTGATTTTTGGAGAAGATCCTTCTTTCCCGCTAGTTTTTGTGATTGTGGATGGTAGCCATGTGTCGGGGATCTCCCTGTTGGATGTCGATAGTGCTATTGCGACTGACAAAATCAAATGCAACATTAATGTTACGTATGGTCCGTGGCTTCATCATCAGACAGTTTTGAAGAGTTATCAGGCACAAAATTGGAGAGTGCACCCGCCTGCTATTTCTTGGGATAACTCTTCATCTTTGTTGCATCCTAATCTAGAGAACTTCCATGTTCCACGGGAAAGGATGACAGAGCAAAAGGTGGGCGACGACGAAGCTGTGGCCGTGATCAGCTCGAACACCGTTTTGAAATCTATGTAG

mRNA sequence

ATGAATCGAGATATAATAGGGATCTCTCTTGCTGTTGTGGAGGTGATTTTTGGAGAAGATCCTTCTTTCCCGCTAGTTTTTGTGATTGTGGATGGTAGCCATGTGTCGGGGATCTCCCTGTTGGATGTCGATAGTGCTATTGCGACTGACAAAATCAAATGCAACATTAATGTTACGTATGGTCCGTGGCTTCATCATCAGACAGTTTTGAAGAGTTATCAGGCACAAAATTGGAGAGTGCACCCGCCTGCTATTTCTTGGGATAACTCTTCATCTTTGTTGCATCCTAATCTAGAGAACTTCCATGTTCCACGGGAAAGGATGACAGAGCAAAAGGTGGGCGACGACGAAGCTGTGGCCGTGATCAGCTCGAACACCGTTTTGAAATCTATGTAG

Coding sequence (CDS)

ATGAATCGAGATATAATAGGGATCTCTCTTGCTGTTGTGGAGGTGATTTTTGGAGAAGATCCTTCTTTCCCGCTAGTTTTTGTGATTGTGGATGGTAGCCATGTGTCGGGGATCTCCCTGTTGGATGTCGATAGTGCTATTGCGACTGACAAAATCAAATGCAACATTAATGTTACGTATGGTCCGTGGCTTCATCATCAGACAGTTTTGAAGAGTTATCAGGCACAAAATTGGAGAGTGCACCCGCCTGCTATTTCTTGGGATAACTCTTCATCTTTGTTGCATCCTAATCTAGAGAACTTCCATGTTCCACGGGAAAGGATGACAGAGCAAAAGGTGGGCGACGACGAAGCTGTGGCCGTGATCAGCTCGAACACCGTTTTGAAATCTATGTAG

Protein sequence

MNRDIIGISLAVVEVIFGEDPSFPLVFVIVDGSHVSGISLLDVDSAIATDKIKCNINVTYGPWLHHQTVLKSYQAQNWRVHPPAISWDNSSSLLHPNLENFHVPRERMTEQKVGDDEAVAVISSNTVLKSM
Homology
[Close]
BLAST of Moc03g21250 vs. NCBI nr
Match: XP_022159860.1 (uncharacterized protein LOC111026150 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 46/103 (44.66%), Postives = 51/103 (49.51%), Query Frame = 0 

Query: 29  IVDGSHVSGISLLDVDSAIATDKIKCNINVTYGPWLHHQTVLKSYQAQNWRVHPPAISWD 88
           + D   +S IS LD +SA+  DKIK NI V YGPW  H  VLKSY AQNW          
Sbjct: 1   MADSDWMSEISPLDANSAVVVDKIKANI-VMYGPWHRHHDVLKSYHAQNW---------- 60

Query: 89  NSSSLLHPNLENFHVPRERMTEQKVGDDEAVAVISSNTVLKSM 132
                             RM EQKVGDD   A I SNTVL S+
Sbjct: 61  -----------------TRMMEQKVGDDGGAATIKSNTVLGSV 75

[Close]
BLAST of Moc03g21250 vs. ExPASy TrEMBL
Match: A0A6J1DZZ2 (uncharacterized protein LOC111026150 OS=Momordica charantia OX=3673 GN=LOC111026150 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.4e-10
Identity = 46/103 (44.66%), Postives = 51/103 (49.51%), Query Frame = 0 

Query: 29  IVDGSHVSGISLLDVDSAIATDKIKCNINVTYGPWLHHQTVLKSYQAQNWRVHPPAISWD 88
           + D   +S IS LD +SA+  DKIK NI V YGPW  H  VLKSY AQNW          
Sbjct: 1   MADSDWMSEISPLDANSAVVVDKIKANI-VMYGPWHRHHDVLKSYHAQNW---------- 60

Query: 89  NSSSLLHPNLENFHVPRERMTEQKVGDDEAVAVISSNTVLKSM 132
                             RM EQKVGDD   A I SNTVL S+
Sbjct: 61  -----------------TRMMEQKVGDDGGAATIKSNTVLGSV 75

The following BLAST results are available for this feature:
BLAST of Moc03g21250 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159860.11.1e-0944.66uncharacterized protein LOC111026150 [Momordica charantia][more]
BLAST of Moc03g21250 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc03g21250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DZZ25.4e-1044.66uncharacterized protein LOC111026150 OS=Momordica charantia OX=3673 GN=LOC111026... [more]
BLAST of Moc03g21250 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc03g21250.1Moc03g21250.1mRNA