Moc02g06760.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g06760.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Protein RALF-like 17
Location	chr2: 4786687 .. 4787049 (+)
Sequence length	363
RNA-Seq Expression	Moc02g06760.1
Synteny	Moc02g06760.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTTTTCAGACGGGCGGCTCTTCTCTGCCTCGGAACAATCCTCCTCTGTTTCCTCTTCGCCGGAGCCGCGGCCTCCGATTCCGACTACGGCGACGACATCCACACCGTCCGGCACTCCTCCAACTCCGGCGCCGCCCTCGACGACTGCAAATCGGATCAGCAGGACAAAGGCGACCAATGCAGGGAGGAAAACGACATCGTCGGAGACGACGATTTCGACGACACCTACAAGATCGTCAACAACATTCCCCTGTCTCTATCGGCGGCCGGCAAGATTCTAAAAGAGGCCGAGGAATCGGACCAGGCTCCCGCCTCCGAGGAAGAACTCGGCAATAACCTCTCCATACTCGGCCACTGA

mRNA sequence

ATGGCTGTTTTCAGACGGGCGGCTCTTCTCTGCCTCGGAACAATCCTCCTCTGTTTCCTCTTCGCCGGAGCCGCGGCCTCCGATTCCGACTACGGCGACGACATCCACACCGTCCGGCACTCCTCCAACTCCGGCGCCGCCCTCGACGACTGCAAATCGGATCAGCAGGACAAAGGCGACCAATGCAGGGAGGAAAACGACATCGTCGGAGACGACGATTTCGACGACACCTACAAGATCGTCAACAACATTCCCCTGTCTCTATCGGCGGCCGGCAAGATTCTAAAAGAGGCCGAGGAATCGGACCAGGCTCCCGCCTCCGAGGAAGAACTCGGCAATAACCTCTCCATACTCGGCCACTGA

Coding sequence (CDS)

ATGGCTGTTTTCAGACGGGCGGCTCTTCTCTGCCTCGGAACAATCCTCCTCTGTTTCCTCTTCGCCGGAGCCGCGGCCTCCGATTCCGACTACGGCGACGACATCCACACCGTCCGGCACTCCTCCAACTCCGGCGCCGCCCTCGACGACTGCAAATCGGATCAGCAGGACAAAGGCGACCAATGCAGGGAGGAAAACGACATCGTCGGAGACGACGATTTCGACGACACCTACAAGATCGTCAACAACATTCCCCTGTCTCTATCGGCGGCCGGCAAGATTCTAAAAGAGGCCGAGGAATCGGACCAGGCTCCCGCCTCCGAGGAAGAACTCGGCAATAACCTCTCCATACTCGGCCACTGA

Protein sequence

MAVFRRAALLCLGTILLCFLFAGAAASDSDYGDDIHTVRHSSNSGAALDDCKSDQQDKGDQCREENDIVGDDDFDDTYKIVNNIPLSLSAAGKILKEAEESDQAPASEEELGNNLSILGH

Homology

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BLAST of Moc02g06760.1 vs. NCBI nr
Match: KAG6570557.1 (hypothetical protein SDJN03_29472, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-30
Identity = 80/120 (66.67%), Postives = 92/120 (76.67%), Query Frame = 0


Query: 1   MAVFRRAALLCLGTILLCFLFAGAAASDSDYGDDIHTVRHSSNSGAALDDCKSDQQDKGD 60
           MAV RR ALL LGTILLC LF  AA ++SDYGDDIHTVRHSS+S    D+C  +Q  KGD
Sbjct: 1   MAVSRRLALLSLGTILLCLLFTRAAIAESDYGDDIHTVRHSSDS----DNCNREQPYKGD 60

Query: 61  QCREENDIVGDDDFDDTYKIVNNIPLSLSAAGKILKEAEESDQAPASEEELGNNLSILGH 120
           QCREEND V D+DFDDTYKIVNN+ + LSA+G  L+EAEE D  P  EEE+  NLSI+GH
Sbjct: 61  QCREENDGVEDEDFDDTYKIVNNVAIRLSASGSKLREAEEEDDLPVPEEEI-RNLSIVGH 115

[Close]

BLAST of Moc02g06760.1 vs. NCBI nr
Match: KAA0054503.1 (hypothetical protein E6C27_scaffold24G002830 [Cucumis melo var. makuwa] >TYK14536.1 hypothetical protein E5676_scaffold552G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27
Identity = 77/122 (63.11%), Postives = 94/122 (77.05%), Query Frame = 0


Query: 1   MAVFRRAAL-LCLGTILLCFLFAGAAASDSDYGDDIHTVRHSSNSGAALDDCKSDQQDKG 60
           MA+ RR AL L LGTIL  FLF   +A+ SDYG+DIHTVRH S++     DCK +  DKG
Sbjct: 1   MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTA----DCKREHLDKG 60

Query: 61  DQCREENDIVGDDDFDDTYKIVNNIPLSLSAAGKILK-EAEESDQAPASEEELGNNLSIL 120
           DQCRE+ND+  DDDFDDTYKIVNNI ++LSA+G IL+ +AEESD  P+SEEE+GN L I+
Sbjct: 61  DQCREDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEEEIGNML-IV 117

[Close]

BLAST of Moc02g06760.1 vs. NCBI nr
Match: KAE8646929.1 (hypothetical protein Csa_021071 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 4.6e-26
Identity = 74/118 (62.71%), Postives = 91/118 (77.12%), Query Frame = 0


Query: 1   MAVFRRAAL-LCLGTILLCFLFAG-AAASDSDYGDDIHTVRHSSNSGAALDDCKSDQQDK 60
           MA+ RR  L L LGTIL CFLF G +AA+  DYGDDIHTV+H S++     +CK +  DK
Sbjct: 1   MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTA----ECKREHLDK 60

Query: 61  GDQCREENDIVGDDDFDDTYKIVNNIPLSLSAAGKIL-KEAEESDQAPASEEELGNNL 116
           GDQCREEND+  DDDFDDTYKIVNNI ++LSA+G+IL +E EES+  P+SEEE+GN L
Sbjct: 61  GDQCREENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEEEMGNIL 114

[Close]

BLAST of Moc02g06760.1 vs. NCBI nr
Match: KAG6604744.1 (hypothetical protein SDJN03_02061, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.7 bits (252), Expect = 4.6e-18
Identity = 58/97 (59.79%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 1  MAVFRRAALLCLGTILLCFLFAGAAASDSDYGDDIHTVRHSSNSGAALDDCKSDQQDKGD 60
          MAV RR AL  LGTILLCFL   AA +DSD+G ++H VR+SS          +D+ +K  
Sbjct: 1  MAVSRRLALFSLGTILLCFLITRAAVADSDHGHNVHVVRYSS--------AATDESEKAH 60

Query: 61 QCREENDIVGDDDFDDTYKIVNNIPLSLSAAGKILKE 98
          QCR+END V DDDFDDTYKIVNNI ++LSA+G+ILKE
Sbjct: 61 QCRQENDDV-DDDFDDTYKIVNNIAITLSASGRILKE 88

[Close]

BLAST of Moc02g06760.1 vs. NCBI nr
Match: RXH90050.1 (hypothetical protein DVH24_032407 [Malus domestica])

HSP 1 Score: 70.9 bits (172), Expect = 8.7e-09
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = 0


Query: 1   MAVFRRAALLCLGTILLCFLFAGAAASDSDYGDDIHTVRHSSNSGAALDDCKSDQQDKGD 60
           MAV RR  LLCLGT+L        A +  ++G                 DC SD  + GD
Sbjct: 1   MAVSRRLLLLCLGTLLASVFLLKVAEARENHG-----------------DCHSD-PNNGD 60

Query: 61  QCRE-ENDIVGDDDFDDTYKIVNNIPLSLSA-AGKILKEAEESDQAPASEEELGNNLSIL 120
           QCRE E D VGDDD DDTYKIVN + ++LSA  G++  +A+E   A  +E+   +++ ++
Sbjct: 61  QCREDETDAVGDDDVDDTYKIVNKVAVTLSARTGEVEPDADELPDADETEDNESSHVIVM 104

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BLAST of Moc02g06760.1 vs. ExPASy TrEMBL
Match: A0A5D3CVV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00150 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.3e-28
Identity = 77/122 (63.11%), Postives = 94/122 (77.05%), Query Frame = 0


Query: 1   MAVFRRAAL-LCLGTILLCFLFAGAAASDSDYGDDIHTVRHSSNSGAALDDCKSDQQDKG 60
           MA+ RR AL L LGTIL  FLF   +A+ SDYG+DIHTVRH S++     DCK +  DKG
Sbjct: 1   MAISRRLALILSLGTILFSFLFTRVSAAGSDYGNDIHTVRHPSDTA----DCKREHLDKG 60

Query: 61  DQCREENDIVGDDDFDDTYKIVNNIPLSLSAAGKILK-EAEESDQAPASEEELGNNLSIL 120
           DQCRE+ND+  DDDFDDTYKIVNNI ++LSA+G IL+ +AEESD  P+SEEE+GN L I+
Sbjct: 61  DQCREDNDLFEDDDFDDTYKIVNNIAITLSASGSILQPDAEESDDIPSSEEEIGNML-IV 117

[Close]

BLAST of Moc02g06760.1 vs. ExPASy TrEMBL
Match: A0A0A0KGZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169270 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.0e-27
Identity = 77/123 (62.60%), Postives = 95/123 (77.24%), Query Frame = 0


Query: 1   MAVFRRAAL-LCLGTILLCFLFAG-AAASDSDYGDDIHTVRHSSNSGAALDDCKSDQQDK 60
           MA+ RR  L L LGTIL CFLF G +AA+  DYGDDIHTV+H S++     +CK +  DK
Sbjct: 1   MAISRRLPLILTLGTILFCFLFIGVSAAAGPDYGDDIHTVKHPSDTA----ECKREHLDK 60

Query: 61  GDQCREENDIVGDDDFDDTYKIVNNIPLSLSAAGKIL-KEAEESDQAPASEEELGNNLSI 120
           GDQCREEND+  DDDFDDTYKIVNNI ++LSA+G+IL +E EES+  P+SEEE+GN L I
Sbjct: 61  GDQCREENDLFEDDDFDDTYKIVNNIAVTLSASGRILQQETEESEDIPSSEEEMGNIL-I 118

[Close]

BLAST of Moc02g06760.1 vs. ExPASy TrEMBL
Match: A0A498J3I4 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_032407 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.2e-09
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = 0


Query: 1   MAVFRRAALLCLGTILLCFLFAGAAASDSDYGDDIHTVRHSSNSGAALDDCKSDQQDKGD 60
           MAV RR  LLCLGT+L        A +  ++G                 DC SD  + GD
Sbjct: 1   MAVSRRLLLLCLGTLLASVFLLKVAEARENHG-----------------DCHSD-PNNGD 60

Query: 61  QCRE-ENDIVGDDDFDDTYKIVNNIPLSLSA-AGKILKEAEESDQAPASEEELGNNLSIL 120
           QCRE E D VGDDD DDTYKIVN + ++LSA  G++  +A+E   A  +E+   +++ ++
Sbjct: 61  QCREDETDAVGDDDVDDTYKIVNKVAVTLSARTGEVEPDADELPDADETEDNESSHVIVM 104

[Close]

BLAST of Moc02g06760.1 vs. ExPASy TrEMBL
Match: A0A2P5B771 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_330420 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.5e-09
Identity = 48/128 (37.50%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 1   MAVFRRAALL-CLGTILLCFL-FAGAAASDSDYGDDIHTVRHSSNSGAALDDCKSD-QQD 60
           MAV R   +  CLGT+L+  L F  AA +D  +  +IH VRH          CK     +
Sbjct: 1   MAVSRGTVMFCCLGTLLVILLFFISAAEADDHHSSEIHAVRHGGGG------CKGGLNSE 60

Query: 61  KGDQCREENDIVG---DDDFDDTYKIVNNIPLSLSAAGKI--LKEAEESDQAPASEEELG 120
           KGDQC++ +D      DDD DDTYKIVNN+ +SLS+ GK+   +  ++ D + +  + + 
Sbjct: 61  KGDQCQDNDDDDDDDLDDDVDDTYKIVNNVKVSLSSTGKLSTAESLDDDDSSESDVDRIN 120

[Close]

BLAST of Moc02g06760.1 vs. ExPASy TrEMBL
Match: A0A540MMV8 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_014257 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.2e-09
Identity = 49/122 (40.16%), Postives = 68/122 (55.74%), Query Frame = 0


Query: 1   MAVFRRAALLCLGTILLCFLFAGAAASDSDYGDDIHTVRHSSNSGAALDDCKSDQQDKGD 60
           MAV RR  LLCLGT+L        A +  ++G                 DC SD  + GD
Sbjct: 1   MAVSRRLLLLCLGTLLASVFLLKVAEAHENHG-----------------DCHSD-PNNGD 60

Query: 61  QCRE-ENDIVGDDDFDDTYKIVNNIPLSLSA-AGKILKEAEESDQAPASEEELGNNLSIL 120
           QCRE E D VGDDD DDTYKIVN + ++LSA  G++   A+E  +A  +E+   +++ ++
Sbjct: 61  QCREDETDAVGDDDVDDTYKIVNKVAVTLSARTGEVEPGADELPEADDTEDNESSHVIVM 104

The following BLAST results are available for this feature:

BLAST of Moc02g06760.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570557.1	1.8e-30	66.67	hypothetical protein SDJN03_29472, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0054503.1	1.1e-27	63.11	hypothetical protein E6C27_scaffold24G002830 [Cucumis melo var. makuwa] >TYK1453...	[more]
KAE8646929.1	4.6e-26	62.71	hypothetical protein Csa_021071 [Cucumis sativus]	[more]
KAG6604744.1	4.6e-18	59.79	hypothetical protein SDJN03_02061, partial [Cucurbita argyrosperma subsp. sorori...	[more]
RXH90050.1	8.7e-09	40.16	hypothetical protein DVH24_032407 [Malus domestica]	[more]

BLAST of Moc02g06760.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc02g06760.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CVV2	5.3e-28	63.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KGZ4	2.0e-27	62.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G169270 PE=4 SV=1	[more]
A0A498J3I4	4.2e-09	40.16	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_032407 PE=4 SV=1	[more]
A0A2P5B771	5.5e-09	37.50	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_330420 PE=4 SV...	[more]
A0A540MMV8	7.2e-09	40.16	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_014257 PE=4 SV=1	[more]

BLAST of Moc02g06760.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..65

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc02g06760	Moc02g06760	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc02g06760.1.exon1	Moc02g06760.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc02g06760.1	cds.Moc02g06760.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc02g06760.1	Moc02g06760.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016740	transferase activity