Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAGCTGGAGGCACAGACCCGTCACCGCCATAACCACCCCAATTCTGATTATATTGACTACTACCTCCTCGCTGCTGCGTTGGAACGGGAGCTGCTTGCGCTGGCGGTGGCGGAATCGGATTTAGACCTGGCGAAGGACCGAAGGACGATTGTGGAGGATATGGCCTGTAAGAAGCCATGGCTATCTCCCCGAAAAGCCGATCAAACAGAACCCTGGAAGAAACAAAATCGCGAAATCACAAAGTACAATTTCACTCAGATATCCCGGGCGATCATCAAAACCCTCCAACGCGAAATCTCCAAAACCCTATCAACGCATCTAGAAGTTAGAGAGAGAGAGGAGGAGAACAGAACGAACACAACAAAAAGGAGCAATCCAGGTAGTGATACTGCCAATGCAAATACTTGTTTTTCAAGAAAAAGAAACCCGAGTCCCGAGAAGATGAAGGCGAATTCACCACCTCGAAGCTTGCAATCTGAATCGATGAGCAATAAAACCCTAGCTGAAGAAAAAAGTAGAGACGAGGGGGAACCAGGAATTGATAGAAGATCAAAGAAGAAAGGTTTAAGAGAGAGAGAAATGGAAGTGATTGGGGGAATTGAGGGGAAGAAGTGGTGGAAAGAACTTCGGTTCCCAAGCAAACGCAGGCACAGCGCAGGGGAGGGCGAGGGCGGCCTTCGTGGATCTCCCACTTTTCTGTTACGTCACGGCGTTTTCTGA mRNA sequence ATGGAGCTGGAGGCACAGACCCGTCACCGCCATAACCACCCCAATTCTGATTATATTGACTACTACCTCCTCGCTGCTGCGTTGGAACGGGAGCTGCTTGCGCTGGCGGTGGCGGAATCGGATTTAGACCTGGCGAAGGACCGAAGGACGATTGTGGAGGATATGGCCTGTAAGAAGCCATGGCTATCTCCCCGAAAAGCCGATCAAACAGAACCCTGGAAGAAACAAAATCGCGAAATCACAAAGTACAATTTCACTCAGATATCCCGGGCGATCATCAAAACCCTCCAACGCGAAATCTCCAAAACCCTATCAACGCATCTAGAAGTTAGAGAGAGAGAGGAGGAGAACAGAACGAACACAACAAAAAGGAGCAATCCAGGTAGTGATACTGCCAATGCAAATACTTGTTTTTCAAGAAAAAGAAACCCGAGTCCCGAGAAGATGAAGGCGAATTCACCACCTCGAAGCTTGCAATCTGAATCGATGAGCAATAAAACCCTAGCTGAAGAAAAAAGTAGAGACGAGGGGGAACCAGGAATTGATAGAAGATCAAAGAAGAAAGGTTTAAGAGAGAGAGAAATGGAAGTGATTGGGGGAATTGAGGGGAAGAAGTGGTGGAAAGAACTTCGGTTCCCAAGCAAACGCAGGCACAGCGCAGGGGAGGGCGAGGGCGGCCTTCGTGGATCTCCCACTTTTCTGTTACGTCACGGCGTTTTCTGA Coding sequence (CDS) ATGGAGCTGGAGGCACAGACCCGTCACCGCCATAACCACCCCAATTCTGATTATATTGACTACTACCTCCTCGCTGCTGCGTTGGAACGGGAGCTGCTTGCGCTGGCGGTGGCGGAATCGGATTTAGACCTGGCGAAGGACCGAAGGACGATTGTGGAGGATATGGCCTGTAAGAAGCCATGGCTATCTCCCCGAAAAGCCGATCAAACAGAACCCTGGAAGAAACAAAATCGCGAAATCACAAAGTACAATTTCACTCAGATATCCCGGGCGATCATCAAAACCCTCCAACGCGAAATCTCCAAAACCCTATCAACGCATCTAGAAGTTAGAGAGAGAGAGGAGGAGAACAGAACGAACACAACAAAAAGGAGCAATCCAGGTAGTGATACTGCCAATGCAAATACTTGTTTTTCAAGAAAAAGAAACCCGAGTCCCGAGAAGATGAAGGCGAATTCACCACCTCGAAGCTTGCAATCTGAATCGATGAGCAATAAAACCCTAGCTGAAGAAAAAAGTAGAGACGAGGGGGAACCAGGAATTGATAGAAGATCAAAGAAGAAAGGTTTAAGAGAGAGAGAAATGGAAGTGATTGGGGGAATTGAGGGGAAGAAGTGGTGGAAAGAACTTCGGTTCCCAAGCAAACGCAGGCACAGCGCAGGGGAGGGCGAGGGCGGCCTTCGTGGATCTCCCACTTTTCTGTTACGTCACGGCGTTTTCTGA Protein sequence MELEAQTRHRHNHPNSDYIDYYLLAAALERELLALAVAESDLDLAKDRRTIVEDMACKKPWLSPRKADQTEPWKKQNREITKYNFTQISRAIIKTLQREISKTLSTHLEVREREEENRTNTTKRSNPGSDTANANTCFSRKRNPSPEKMKANSPPRSLQSESMSNKTLAEEKSRDEGEPGIDRRSKKKGLREREMEVIGGIEGKKWWKELRFPSKRRHSAGEGEGGLRGSPTFLLRHGVF
Homology
BLAST of MS025772.1 vs. NCBI nr
Match: KAG6575505.1 (hypothetical protein SDJN03_26144, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 80.5 bits (197), Expect = 2.2e-11 Identity = 51/91 (56.04%), Postives = 64/91 (70.33%), Query Frame = 0 Query: 33 LALAVAESDLDLAKDRRTIVEDMACKKPW--LSPRKADQTEPWKKQNREI-TKYNFTQIS 92 +AL AES D KDR+TIVEDMACKKPW L +K DQ +P K +NREI TK FTQIS Sbjct: 10 VALVEAESGFDPVKDRKTIVEDMACKKPWLYLPQKKLDQIQPSKTENREITTKSKFTQIS 69
Query: 93 RAIIKT--LQREISKTLSTHLEVREREEENR 119 + I K ++EI KTLST+LEV+ + + N+ Sbjct: 70 QPITKNPPPKQEIHKTLSTNLEVQNKGKRNK 100
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6575505.1 | 2.2e-11 | 56.04 | hypothetical protein SDJN03_26144, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 107..121 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 122..142 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 167..194 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 107..194 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 150..166 |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
MS025772 | MS025772 | gene |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
MS025772.1-cds | MS025772.1-cds-scaffold813:1940937..1941659 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
MS025772.1 | MS025772.1-protein | polypeptide |
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