MS025772.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS025772.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold813: 1940937 .. 1941659 (-)
Sequence length	723
RNA-Seq Expression	MS025772.1
Synteny	MS025772.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTGGAGGCACAGACCCGTCACCGCCATAACCACCCCAATTCTGATTATATTGACTACTACCTCCTCGCTGCTGCGTTGGAACGGGAGCTGCTTGCGCTGGCGGTGGCGGAATCGGATTTAGACCTGGCGAAGGACCGAAGGACGATTGTGGAGGATATGGCCTGTAAGAAGCCATGGCTATCTCCCCGAAAAGCCGATCAAACAGAACCCTGGAAGAAACAAAATCGCGAAATCACAAAGTACAATTTCACTCAGATATCCCGGGCGATCATCAAAACCCTCCAACGCGAAATCTCCAAAACCCTATCAACGCATCTAGAAGTTAGAGAGAGAGAGGAGGAGAACAGAACGAACACAACAAAAAGGAGCAATCCAGGTAGTGATACTGCCAATGCAAATACTTGTTTTTCAAGAAAAAGAAACCCGAGTCCCGAGAAGATGAAGGCGAATTCACCACCTCGAAGCTTGCAATCTGAATCGATGAGCAATAAAACCCTAGCTGAAGAAAAAAGTAGAGACGAGGGGGAACCAGGAATTGATAGAAGATCAAAGAAGAAAGGTTTAAGAGAGAGAGAAATGGAAGTGATTGGGGGAATTGAGGGGAAGAAGTGGTGGAAAGAACTTCGGTTCCCAAGCAAACGCAGGCACAGCGCAGGGGAGGGCGAGGGCGGCCTTCGTGGATCTCCCACTTTTCTGTTACGTCACGGCGTTTTCTGA

mRNA sequence

ATGGAGCTGGAGGCACAGACCCGTCACCGCCATAACCACCCCAATTCTGATTATATTGACTACTACCTCCTCGCTGCTGCGTTGGAACGGGAGCTGCTTGCGCTGGCGGTGGCGGAATCGGATTTAGACCTGGCGAAGGACCGAAGGACGATTGTGGAGGATATGGCCTGTAAGAAGCCATGGCTATCTCCCCGAAAAGCCGATCAAACAGAACCCTGGAAGAAACAAAATCGCGAAATCACAAAGTACAATTTCACTCAGATATCCCGGGCGATCATCAAAACCCTCCAACGCGAAATCTCCAAAACCCTATCAACGCATCTAGAAGTTAGAGAGAGAGAGGAGGAGAACAGAACGAACACAACAAAAAGGAGCAATCCAGGTAGTGATACTGCCAATGCAAATACTTGTTTTTCAAGAAAAAGAAACCCGAGTCCCGAGAAGATGAAGGCGAATTCACCACCTCGAAGCTTGCAATCTGAATCGATGAGCAATAAAACCCTAGCTGAAGAAAAAAGTAGAGACGAGGGGGAACCAGGAATTGATAGAAGATCAAAGAAGAAAGGTTTAAGAGAGAGAGAAATGGAAGTGATTGGGGGAATTGAGGGGAAGAAGTGGTGGAAAGAACTTCGGTTCCCAAGCAAACGCAGGCACAGCGCAGGGGAGGGCGAGGGCGGCCTTCGTGGATCTCCCACTTTTCTGTTACGTCACGGCGTTTTCTGA

Coding sequence (CDS)

ATGGAGCTGGAGGCACAGACCCGTCACCGCCATAACCACCCCAATTCTGATTATATTGACTACTACCTCCTCGCTGCTGCGTTGGAACGGGAGCTGCTTGCGCTGGCGGTGGCGGAATCGGATTTAGACCTGGCGAAGGACCGAAGGACGATTGTGGAGGATATGGCCTGTAAGAAGCCATGGCTATCTCCCCGAAAAGCCGATCAAACAGAACCCTGGAAGAAACAAAATCGCGAAATCACAAAGTACAATTTCACTCAGATATCCCGGGCGATCATCAAAACCCTCCAACGCGAAATCTCCAAAACCCTATCAACGCATCTAGAAGTTAGAGAGAGAGAGGAGGAGAACAGAACGAACACAACAAAAAGGAGCAATCCAGGTAGTGATACTGCCAATGCAAATACTTGTTTTTCAAGAAAAAGAAACCCGAGTCCCGAGAAGATGAAGGCGAATTCACCACCTCGAAGCTTGCAATCTGAATCGATGAGCAATAAAACCCTAGCTGAAGAAAAAAGTAGAGACGAGGGGGAACCAGGAATTGATAGAAGATCAAAGAAGAAAGGTTTAAGAGAGAGAGAAATGGAAGTGATTGGGGGAATTGAGGGGAAGAAGTGGTGGAAAGAACTTCGGTTCCCAAGCAAACGCAGGCACAGCGCAGGGGAGGGCGAGGGCGGCCTTCGTGGATCTCCCACTTTTCTGTTACGTCACGGCGTTTTCTGA

Protein sequence

MELEAQTRHRHNHPNSDYIDYYLLAAALERELLALAVAESDLDLAKDRRTIVEDMACKKPWLSPRKADQTEPWKKQNREITKYNFTQISRAIIKTLQREISKTLSTHLEVREREEENRTNTTKRSNPGSDTANANTCFSRKRNPSPEKMKANSPPRSLQSESMSNKTLAEEKSRDEGEPGIDRRSKKKGLREREMEVIGGIEGKKWWKELRFPSKRRHSAGEGEGGLRGSPTFLLRHGVF

Homology

[Close]

BLAST of MS025772.1 vs. NCBI nr
Match: KAG6575505.1 (hypothetical protein SDJN03_26144, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-11
Identity = 51/91 (56.04%), Postives = 64/91 (70.33%), Query Frame = 0


Query: 33  LALAVAESDLDLAKDRRTIVEDMACKKPW--LSPRKADQTEPWKKQNREI-TKYNFTQIS 92
           +AL  AES  D  KDR+TIVEDMACKKPW  L  +K DQ +P K +NREI TK  FTQIS
Sbjct: 10  VALVEAESGFDPVKDRKTIVEDMACKKPWLYLPQKKLDQIQPSKTENREITTKSKFTQIS 69

Query: 93  RAIIKT--LQREISKTLSTHLEVREREEENR 119
           + I K    ++EI KTLST+LEV+ + + N+
Sbjct: 70  QPITKNPPPKQEIHKTLSTNLEVQNKGKRNK 100

The following BLAST results are available for this feature:

BLAST of MS025772.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575505.1	2.2e-11	56.04	hypothetical protein SDJN03_26144, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS025772.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS025772.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS025772.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..166

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS025772	MS025772	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS025772.1-cds	MS025772.1-cds-scaffold813:1940937..1941659	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS025772.1	MS025772.1-protein	polypeptide