
MS024635.1 (mRNA) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAAGCAAAACCCAAGCTGCGGCAAGCCATAGACTTGCTCTGCTCTCGGGGCAGCGCTTCCTCTGAGGCATACACCCACTTGATCCTCGAATGCGTGCGTACCAATGAAGTCGACCAAGCCAAGAGACTGCAATCTCACATGGAACACCACCTTTTCCAACCCCCTGATCCTTTTCTCCAGAATCAGCTACTTCATTTGTATGCTAAATTTGGGAAAGTTCGAGATGCCCAAAACCTGTTTGATAAAATGCTCGAGAGGGATGTTTTCTCCTGGAATGCGCTGCTCTCTGCGTATGCTAAATCGGGGTCTATCCAGAATTTGCAGGCGACATTTGATCGAATGCCTTTCCGGGATTCGGTTTCATACAATACGACGATTGCTGGGTTTGCTGGAAATGGTTGTCCAAAAGAGTCGCTCGAGCTTTTTAGGAGAATGCAGAGTGAAGGTTTTGTGCCTACGGAGTATACGAATGTGAGTGCATTGAATGCGGCTGCGCAGTTGGTGGATTTGAGGCGTGGGAAAGAAATTCATGGGAGTGTTATTGTGCATAAATTTTTAGGGAATACGTTCATCTGGAATGCTTTAACAGACATGTATGCTAAATGTGGTGAGATTGAACAGGCAAGGTGGCTGTTTGATCATCTTGCTAACAAGAATTTGATTTCTTGGAACTTGATGATATCTGGGTATGTGAAGAATGGACAGCCTGAGAAGTGCATTGGCCTGTTACATGAAATGCAGATGTCTGGTCACATGCCTGATCAAGTTACGATGTCAACTATAATTGCAGCTTACTGTCAATGTCGATGTGTAGATGAAGCAAGAAAGGTGTTTAGTGAATTTAAGGAGAAGGATATTGTTTGCTGGACAGCCATGTTGGTGGGTTATGCAAAGAATGGCAGAGAAGAGGATGCACTGTTGTTGTTTAATGAAATGCTGTTAGAACATGTTAAACCTGACAGCTACACTTTATCAAGTGTTGTCAGTTCATGTTCCAAATTAGCATCTCTGTATCATGGTCAGGCAGTCCATGGGAAATCAATTCTTGCTGGGCTTGATAATAATTTGCTTGTTTCTAGTGCACTAATTGATATGTATTCTAAATGTGGTTTCGTAGACGATGCAAGGTCAGTCTTCAACATGATGCCGACTAGGAATGTGATTTCATGGAATGCTATGATTGTTGGTTATGCTCAAAATGGACATGATAAGGATGCCCTTGCATTCTTTGAAAATATGTTGCAACAGAAATTTAAACCGGATAATGTAACATTTATAGGTGTTTTATCTGCTTGTCTCCATTCTAATTGGATTGAGAAAGGGCAGGGGTATTTTGATTCCATAAGCAATCAACATGGACTGATACCTACTGTGGATCATTATGCGTGTATGGTCAATCTCCTAGGACGTTTGGGCCGCATTGATCAAGCAGTTGATCTAATAAAAAGTATGCCCCATGAACCAGATTGCCTGATCTGGTCCACACTTCTATCAGTTAGTGCAGTGAAGGGTGATATTGCAAATGCAGAAATGGCAGCTAGGTATCTCTTTGAATTGGATCCTCTGAATGCTGTACCTTATGTTATGCTCTCAAATATGTATGCCTCTATGGGTAGATGGAAGGATGTAGCATCAGTTAGGACTCTCATGAAGAGCAAGAATGTCAAAAAATTTGCTGGGTACAGTTGGATTGAGATTGATAATGAGGTGCACAAATTTACATCTGAGGACCGGACTCATCCAGAAACAGAGAAAATATATGAAGAATTGAACATGTTGATTAGGAAATTTCAAGAAGATGGATTTACCCCTAATACAAATCTAGTTTTGCATGATGTCGGGGAGGACGAAAAGTTCAAATCTATATGTTTCCACAGTGAGAAACTTGCACTTGCTTTTGGTCTGGTAAAGAAACCTAATGGAGTTACTCCAATTAGGATTATAAAAAATATTCGCATTTGTAGTGACTGCCATGAATTTATGAAGTTTGCTTCTAGGATTATTAGAAGGCAAATAATCTTGAGAGATTCAAATAGATTTCATCATTTTGCAACTGGGAAATGCTCCTGTAAGGACAACTGGTAACGGATATGCTGGTGTAGATTGGGGGAAGCCACTGAGTTTCAAGGTGAGAAAATGGTGATGCGAGGATACAGAGATCAAAACAAGGAAGAGTAGAAGGTTCAAGGAAAGGCTTCAGGTCCTGAATTTTTCAAAATGCGAAAGCTTAATGACATTTAACTTTCAAAAGTTAGTCGAAATTCTAAAATAGGAAAGAGATTCACACCTTATTAGAGCATGTCATATTACAACATTGAACCGATGGAAGTTTCCTTGTACACATCCTCCGAACTCAGTCTTTTGTGAGACAGAGTCAGTTTTGTGCACTGAGGAACATCAATCTACAACTCACCAACTCCAAGGTTAGTAGTGTAGGAAAATCTCTCATTTGTTATGTATCAGAAGCACACACATCTTTCTTCCACTTTAAATTTCATAGTTATAAGTCAGTCATTCTGATCTTCACCATAAATCAGTTGAAGGATTGGTTAATTCTACACAGGCTTGTGAGACCTCGTAACACTCAAATGTCATTATGTAATTGACAAGTGAAGAGAAACAGAAGACAAGGTGAACCGACACTCTGCCAGGAAAAAAGCATAGAATCCAAGAGGATGTTACAATTAATGAAGGGGACATCATGTCCAAAGAAACGGCTGCAATGATAGCCCTTAGTTCAAGGATGCATAGTAATGACTCGTGGTAGAATAAACAGCGAGAATTCTCTAGTTTTCCAGTGAGAACGAAACAATACAATGTTTAAAGTGGCCTATTTACTTCTCCTGAAATTCCCTTTTACTGGCAGAAAATTTGCTCGCGTAGCTTCTTTCTTTAACATTGATTGATAACTTGTCGATATCTCGACGTTCATGCATGCTTCCTTAGACAGATACTGAATGGTGCCCAAATTTCCATGTAGTACAGGTTCTTCCATAGCCATCAAATGGGCCATTCTTATCTTTCATCTGCTTGCTCACTTGTCTCAGAGTAGGAAAAGGTTGGATTCTGATAATTTGTACTGCAATCAGAAAGAGTTCCATGGTTTGGTGGTAATTATCTTCGTACTTTGTGCTGCAGAACCACGTGCTGGAAACTTGGCTGCTAATTGA ATGCAAGCAAAACCCAAGCTGCGGCAAGCCATAGACTTGCTCTGCTCTCGGGGCAGCGCTTCCTCTGAGGCATACACCCACTTGATCCTCGAATGCGTGCGTACCAATGAAGTCGACCAAGCCAAGAGACTGCAATCTCACATGGAACACCACCTTTTCCAACCCCCTGATCCTTTTCTCCAGAATCAGCTACTTCATTTGTATGCTAAATTTGGGAAAGTTCGAGATGCCCAAAACCTGTTTGATAAAATGCTCGAGAGGGATGTTTTCTCCTGGAATGCGCTGCTCTCTGCGTATGCTAAATCGGGGTCTATCCAGAATTTGCAGGCGACATTTGATCGAATGCCTTTCCGGGATTCGGTTTCATACAATACGACGATTGCTGGGTTTGCTGGAAATGGTTGTCCAAAAGAGTCGCTCGAGCTTTTTAGGAGAATGCAGAGTGAAGGTTTTGTGCCTACGGAGTATACGAATGTGAGTGCATTGAATGCGGCTGCGCAGTTGGTGGATTTGAGGCGTGGGAAAGAAATTCATGGGAGTGTTATTGTGCATAAATTTTTAGGGAATACGTTCATCTGGAATGCTTTAACAGACATGTATGCTAAATGTGGTGAGATTGAACAGGCAAGGTGGCTGTTTGATCATCTTGCTAACAAGAATTTGATTTCTTGGAACTTGATGATATCTGGGTATGTGAAGAATGGACAGCCTGAGAAGTGCATTGGCCTGTTACATGAAATGCAGATGTCTGGTCACATGCCTGATCAAAGTAGGAAAAGGTTGGATTCTGATAATTTGTACTGCAATCAGAAAGAGTTCCATGGTTTGGTGGTAATTATCTTCGTACTTTGTGCTGCAGAACCACGTGCTGGAAACTTGGCTGCTAATTGA ATGCAAGCAAAACCCAAGCTGCGGCAAGCCATAGACTTGCTCTGCTCTCGGGGCAGCGCTTCCTCTGAGGCATACACCCACTTGATCCTCGAATGCGTGCGTACCAATGAAGTCGACCAAGCCAAGAGACTGCAATCTCACATGGAACACCACCTTTTCCAACCCCCTGATCCTTTTCTCCAGAATCAGCTACTTCATTTGTATGCTAAATTTGGGAAAGTTCGAGATGCCCAAAACCTGTTTGATAAAATGCTCGAGAGGGATGTTTTCTCCTGGAATGCGCTGCTCTCTGCGTATGCTAAATCGGGGTCTATCCAGAATTTGCAGGCGACATTTGATCGAATGCCTTTCCGGGATTCGGTTTCATACAATACGACGATTGCTGGGTTTGCTGGAAATGGTTGTCCAAAAGAGTCGCTCGAGCTTTTTAGGAGAATGCAGAGTGAAGGTTTTGTGCCTACGGAGTATACGAATGTGAGTGCATTGAATGCGGCTGCGCAGTTGGTGGATTTGAGGCGTGGGAAAGAAATTCATGGGAGTGTTATTGTGCATAAATTTTTAGGGAATACGTTCATCTGGAATGCTTTAACAGACATGTATGCTAAATGTGGTGAGATTGAACAGGCAAGGTGGCTGTTTGATCATCTTGCTAACAAGAATTTGATTTCTTGGAACTTGATGATATCTGGGTATGTGAAGAATGGACAGCCTGAGAAGTGCATTGGCCTGTTACATGAAATGCAGATGTCTGGTCACATGCCTGATCAAAGTAGGAAAAGGTTGGATTCTGATAATTTGTACTGCAATCAGAAAGAGTTCCATGGTTTGGTGGTAATTATCTTCGTACTTTGTGCTGCAGAACCACGTGCTGGAAACTTGGCTGCTAATTGA MQAKPKLRQAIDLLCSRGSASSEAYTHLILECVRTNEVDQAKRLQSHMEHHLFQPPDPFLQNQLLHLYAKFGKVRDAQNLFDKMLERDVFSWNALLSAYAKSGSIQNLQATFDRMPFRDSVSYNTTIAGFAGNGCPKESLELFRRMQSEGFVPTEYTNVSALNAAAQLVDLRRGKEIHGSVIVHKFLGNTFIWNALTDMYAKCGEIEQARWLFDHLANKNLISWNLMISGYVKNGQPEKCIGLLHEMQMSGHMPDQSRKRLDSDNLYCNQKEFHGLVVIIFVLCAAEPRAGNLAAN Homology
BLAST of MS024635.1 vs. NCBI nr
Match: XP_022145099.1 (pentatricopeptide repeat-containing protein At4g02750-like [Momordica charantia] >XP_022145100.1 pentatricopeptide repeat-containing protein At4g02750-like [Momordica charantia]) HSP 1 Score: 528.9 bits (1361), Expect = 2.9e-146 Identity = 255/256 (99.61%), Postives = 256/256 (100.00%), Query Frame = 0
BLAST of MS024635.1 vs. NCBI nr
Match: XP_022960689.1 (pentatricopeptide repeat-containing protein At4g02750-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 466.5 bits (1199), Expect = 1.8e-127 Identity = 220/256 (85.94%), Postives = 239/256 (93.36%), Query Frame = 0
BLAST of MS024635.1 vs. NCBI nr
Match: KAG6589945.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 466.5 bits (1199), Expect = 1.8e-127 Identity = 220/256 (85.94%), Postives = 239/256 (93.36%), Query Frame = 0
BLAST of MS024635.1 vs. NCBI nr
Match: KAG7023609.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 466.5 bits (1199), Expect = 1.8e-127 Identity = 220/256 (85.94%), Postives = 239/256 (93.36%), Query Frame = 0
BLAST of MS024635.1 vs. NCBI nr
Match: XP_022960690.1 (pentatricopeptide repeat-containing protein At2g13600-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 466.5 bits (1199), Expect = 1.8e-127 Identity = 220/256 (85.94%), Postives = 239/256 (93.36%), Query Frame = 0
BLAST of MS024635.1 vs. ExPASy Swiss-Prot
Match: O23169 (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H5 PE=3 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 9.3e-39 Identity = 85/251 (33.86%), Postives = 141/251 (56.18%), Query Frame = 0
BLAST of MS024635.1 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 9.3e-39 Identity = 84/235 (35.74%), Postives = 132/235 (56.17%), Query Frame = 0
BLAST of MS024635.1 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 7.8e-38 Identity = 88/247 (35.63%), Postives = 134/247 (54.25%), Query Frame = 0
BLAST of MS024635.1 vs. ExPASy Swiss-Prot
Match: Q9SIL5 (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E78 PE=2 SV=1) HSP 1 Score: 157.5 bits (397), Expect = 2.3e-37 Identity = 81/195 (41.54%), Postives = 113/195 (57.95%), Query Frame = 0
BLAST of MS024635.1 vs. ExPASy Swiss-Prot
Match: Q9SIT7 (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E76 PE=3 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 5.1e-37 Identity = 68/198 (34.34%), Postives = 122/198 (61.62%), Query Frame = 0
BLAST of MS024635.1 vs. ExPASy TrEMBL
Match: A0A6J1CU81 (pentatricopeptide repeat-containing protein At4g02750-like OS=Momordica charantia OX=3673 GN=LOC111014606 PE=3 SV=1) HSP 1 Score: 528.9 bits (1361), Expect = 1.4e-146 Identity = 255/256 (99.61%), Postives = 256/256 (100.00%), Query Frame = 0
BLAST of MS024635.1 vs. ExPASy TrEMBL
Match: A0A6J1HBT0 (pentatricopeptide repeat-containing protein At4g02750-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461409 PE=3 SV=1) HSP 1 Score: 466.5 bits (1199), Expect = 8.5e-128 Identity = 220/256 (85.94%), Postives = 239/256 (93.36%), Query Frame = 0
BLAST of MS024635.1 vs. ExPASy TrEMBL
Match: A0A6J1H9T7 (pentatricopeptide repeat-containing protein At2g13600-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461409 PE=4 SV=1) HSP 1 Score: 466.5 bits (1199), Expect = 8.5e-128 Identity = 220/256 (85.94%), Postives = 239/256 (93.36%), Query Frame = 0
BLAST of MS024635.1 vs. ExPASy TrEMBL
Match: A0A6J1JK08 (putative pentatricopeptide repeat-containing protein At1g68930 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485131 PE=4 SV=1) HSP 1 Score: 461.8 bits (1187), Expect = 2.1e-126 Identity = 219/256 (85.55%), Postives = 237/256 (92.58%), Query Frame = 0
BLAST of MS024635.1 vs. ExPASy TrEMBL
Match: A0A6J1JAW4 (pentatricopeptide repeat-containing protein At4g02750-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485131 PE=3 SV=1) HSP 1 Score: 461.8 bits (1187), Expect = 2.1e-126 Identity = 219/256 (85.55%), Postives = 237/256 (92.58%), Query Frame = 0
BLAST of MS024635.1 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 162.2 bits (409), Expect = 6.6e-40 Identity = 84/235 (35.74%), Postives = 132/235 (56.17%), Query Frame = 0
BLAST of MS024635.1 vs. TAIR 10
Match: AT4G37170.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 162.2 bits (409), Expect = 6.6e-40 Identity = 85/251 (33.86%), Postives = 141/251 (56.18%), Query Frame = 0
BLAST of MS024635.1 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein ) HSP 1 Score: 159.1 bits (401), Expect = 5.6e-39 Identity = 88/247 (35.63%), Postives = 134/247 (54.25%), Query Frame = 0
BLAST of MS024635.1 vs. TAIR 10
Match: AT2G20540.1 (mitochondrial editing factor 21 ) HSP 1 Score: 157.5 bits (397), Expect = 1.6e-38 Identity = 81/195 (41.54%), Postives = 113/195 (57.95%), Query Frame = 0
BLAST of MS024635.1 vs. TAIR 10
Match: AT2G13600.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 156.4 bits (394), Expect = 3.6e-38 Identity = 68/198 (34.34%), Postives = 122/198 (61.62%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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