MS018674.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS018674.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	GEM-like protein 7 isoform X1
Location	scaffold313: 962698 .. 962799 (-)
Sequence length	102
RNA-Seq Expression	MS018674.1
Synteny	MS018674.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAGACTAGGATCCAAGATCACAGAAACTGTAAAGGGAAAGTTGAGCTTGGGAGCTAAAATTCTTCTAGCAGGTGGATTAAGGAAAACCTACAGGCAATTG

mRNA sequence

GTGAGACTAGGATCCAAGATCACAGAAACTGTAAAGGGAAAGTTGAGCTTGGGAGCTAAAATTCTTCTAGCAGGTGGATTAAGGAAAACCTACAGGCAATTG

Coding sequence (CDS)

GTGAGACTAGGATCCAAGATCACAGAAACTGTAAAGGGAAAGTTGAGCTTGGGAGCTAAAATTCTTCTAGCAGGTGGATTAAGGAAAACCTACAGGCAATTG

Protein sequence

VRLGSKITETVKGKLSLGAKILLAGGLRKTYRQL

Homology

[Close]

BLAST of MS018674.1 vs. NCBI nr
Match: XP_022141598.1 (putative GEM-like protein 8 isoform X2 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 1   VRLGSKITETVKGKLSLGAKILLAGGLRKTYRQL 35
           VRLGSKITETVKGKLSLGAKILL GGLRK Y+QL
Sbjct: 90  VRLGSKITETVKGKLSLGAKILLVGGLRKIYKQL 123

[Close]

BLAST of MS018674.1 vs. NCBI nr
Match: XP_022141600.1 (putative GEM-like protein 8 isoform X4 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 1   VRLGSKITETVKGKLSLGAKILLAGGLRKTYRQL 35
           VRLGSKITETVKGKLSLGAKILL GGLRK Y+QL
Sbjct: 79  VRLGSKITETVKGKLSLGAKILLVGGLRKIYKQL 112

[Close]

BLAST of MS018674.1 vs. NCBI nr
Match: XP_022141596.1 (putative GEM-like protein 8 isoform X1 [Momordica charantia] >XP_022141597.1 putative GEM-like protein 8 isoform X1 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 1   VRLGSKITETVKGKLSLGAKILLAGGLRKTYRQL 35
           VRLGSKITETVKGKLSLGAKILL GGLRK Y+QL
Sbjct: 102 VRLGSKITETVKGKLSLGAKILLVGGLRKIYKQL 135

[Close]

BLAST of MS018674.1 vs. NCBI nr
Match: XP_022141602.1 (putative GEM-like protein 8 isoform X5 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 1   VRLGSKITETVKGKLSLGAKILLAGGLRKTYRQL 35
           VRLGSKITETVKGKLSLGAKILL GGLRK Y+QL
Sbjct: 77  VRLGSKITETVKGKLSLGAKILLVGGLRKIYKQL 110

[Close]

BLAST of MS018674.1 vs. NCBI nr
Match: XP_022141603.1 (putative GEM-like protein 8 isoform X6 [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 1   VRLGSKITETVKGKLSLGAKILLAGGLRKTYRQL 35
           VRLGSKITETVKGKLSLGAKILL GGLRK Y+QL
Sbjct: 72  VRLGSKITETVKGKLSLGAKILLVGGLRKIYKQL 105

[Close]

BLAST of MS018674.1 vs. ExPASy Swiss-Prot
Match: Q9FMW6 (GEM-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 6.5e-05
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 2   RLGSKITETVKGKLSLGAKILLAGGLRKTYRQL 35
           +LG K+TETVK KLSLGAKIL  GGL K Y++L
Sbjct: 69  KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRL 101

[Close]

BLAST of MS018674.1 vs. ExPASy Swiss-Prot
Match: Q9FMW5 (GEM-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 6.5e-05
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 2  RLGSKITETVKGKLSLGAKILLAGGLRKTYRQL 35
          +LG K+TETVK KLSLGAKIL  GGL K Y++L
Sbjct: 61 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRL 93

[Close]

BLAST of MS018674.1 vs. ExPASy Swiss-Prot
Match: Q9FMW4 (Putative GEM-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 1.5e-04
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 2   RLGSKITETVKGKLSLGAKILLAGGLRKTYRQL 35
           +LG K+TETVK KLSLGA+IL  GGL K Y++L
Sbjct: 69  KLGPKLTETVKRKLSLGARILQMGGLEKIYKRL 101

[Close]

BLAST of MS018674.1 vs. ExPASy TrEMBL
Match: A0A6J1CJN3 (putative GEM-like protein 8 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011920 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.4e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 1   VRLGSKITETVKGKLSLGAKILLAGGLRKTYRQL 35
           VRLGSKITETVKGKLSLGAKILL GGLRK Y+QL
Sbjct: 102 VRLGSKITETVKGKLSLGAKILLVGGLRKIYKQL 135

[Close]

BLAST of MS018674.1 vs. ExPASy TrEMBL
Match: A0A6J1CIK1 (putative GEM-like protein 8 isoform X4 OS=Momordica charantia OX=3673 GN=LOC111011920 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.4e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 1   VRLGSKITETVKGKLSLGAKILLAGGLRKTYRQL 35
           VRLGSKITETVKGKLSLGAKILL GGLRK Y+QL
Sbjct: 79  VRLGSKITETVKGKLSLGAKILLVGGLRKIYKQL 112

[Close]

BLAST of MS018674.1 vs. ExPASy TrEMBL
Match: A0A6J1CJ44 (putative GEM-like protein 8 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111011920 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.4e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 1   VRLGSKITETVKGKLSLGAKILLAGGLRKTYRQL 35
           VRLGSKITETVKGKLSLGAKILL GGLRK Y+QL
Sbjct: 85  VRLGSKITETVKGKLSLGAKILLVGGLRKIYKQL 118

[Close]

BLAST of MS018674.1 vs. ExPASy TrEMBL
Match: A0A6J1CKA0 (putative GEM-like protein 8 isoform X5 OS=Momordica charantia OX=3673 GN=LOC111011920 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.4e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 1   VRLGSKITETVKGKLSLGAKILLAGGLRKTYRQL 35
           VRLGSKITETVKGKLSLGAKILL GGLRK Y+QL
Sbjct: 77  VRLGSKITETVKGKLSLGAKILLVGGLRKIYKQL 110

[Close]

BLAST of MS018674.1 vs. ExPASy TrEMBL
Match: A0A6J1CKZ6 (putative GEM-like protein 8 isoform X6 OS=Momordica charantia OX=3673 GN=LOC111011920 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.4e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0


Query: 1   VRLGSKITETVKGKLSLGAKILLAGGLRKTYRQL 35
           VRLGSKITETVKGKLSLGAKILL GGLRK Y+QL
Sbjct: 72  VRLGSKITETVKGKLSLGAKILLVGGLRKIYKQL 105

[Close]

BLAST of MS018674.1 vs. TAIR 10
Match: AT5G23360.1 (GRAM domain-containing protein / ABA-responsive protein-related )

HSP 1 Score: 46.6 bits (109), Expect = 4.6e-06
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 2  RLGSKITETVKGKLSLGAKILLAGGLRKTYRQL 35
          +LG K+TETVK KLSLGAKIL  GGL K Y++L
Sbjct: 61 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRL 93

[Close]

BLAST of MS018674.1 vs. TAIR 10
Match: AT5G23350.1 (GRAM domain-containing protein / ABA-responsive protein-related )

HSP 1 Score: 46.6 bits (109), Expect = 4.6e-06
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 2   RLGSKITETVKGKLSLGAKILLAGGLRKTYRQL 35
           +LG K+TETVK KLSLGAKIL  GGL K Y++L
Sbjct: 131 KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRL 163

[Close]

BLAST of MS018674.1 vs. TAIR 10
Match: AT5G23370.1 (GRAM domain-containing protein / ABA-responsive protein-related )

HSP 1 Score: 45.4 bits (106), Expect = 1.0e-05
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 2   RLGSKITETVKGKLSLGAKILLAGGLRKTYRQL 35
           +LG K+TETVK KLSLGA+IL  GGL K Y++L
Sbjct: 69  KLGPKLTETVKRKLSLGARILQMGGLEKIYKRL 101

[Close]

BLAST of MS018674.1 vs. TAIR 10
Match: AT5G08350.1 (GRAM domain-containing protein / ABA-responsive protein-related )

HSP 1 Score: 40.4 bits (93), Expect = 3.3e-04
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 2   RLGSKITETVKGKLSLGAKILLAGGLRKTYRQL 35
           ++  K+TETVK KLSLGA+IL  GGL K +++L
Sbjct: 68  KIRPKLTETVKRKLSLGARILQVGGLEKIFKRL 100

The following BLAST results are available for this feature:

BLAST of MS018674.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141598.1	2.0e-06	91.18	putative GEM-like protein 8 isoform X2 [Momordica charantia]	[more]
XP_022141600.1	2.0e-06	91.18	putative GEM-like protein 8 isoform X4 [Momordica charantia]	[more]
XP_022141596.1	2.0e-06	91.18	putative GEM-like protein 8 isoform X1 [Momordica charantia] >XP_022141597.1 put...	[more]
XP_022141602.1	2.0e-06	91.18	putative GEM-like protein 8 isoform X5 [Momordica charantia]	[more]
XP_022141603.1	2.0e-06	91.18	putative GEM-like protein 8 isoform X6 [Momordica charantia]	[more]

BLAST of MS018674.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMW6	6.5e-05	69.70	GEM-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=At5g23350 PE=2 SV=2	[more]
Q9FMW5	6.5e-05	69.70	GEM-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=At5g23360 PE=2 SV=1	[more]
Q9FMW4	1.5e-04	66.67	Putative GEM-like protein 8 OS=Arabidopsis thaliana OX=3702 GN=At5g23370 PE=3 SV...	[more]

BLAST of MS018674.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CJN3	9.4e-07	91.18	putative GEM-like protein 8 isoform X1 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1CIK1	9.4e-07	91.18	putative GEM-like protein 8 isoform X4 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1CJ44	9.4e-07	91.18	putative GEM-like protein 8 isoform X3 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1CKA0	9.4e-07	91.18	putative GEM-like protein 8 isoform X5 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1CKZ6	9.4e-07	91.18	putative GEM-like protein 8 isoform X6 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]

BLAST of MS018674.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23360.1	4.6e-06	69.70	GRAM domain-containing protein / ABA-responsive protein-related	[more]
AT5G23350.1	4.6e-06	69.70	GRAM domain-containing protein / ABA-responsive protein-related	[more]
AT5G23370.1	1.0e-05	66.67	GRAM domain-containing protein / ABA-responsive protein-related	[more]
AT5G08350.1	3.3e-04	57.58	GRAM domain-containing protein / ABA-responsive protein-related	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS018674	MS018674	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS018674.1-cds	MS018674.1-cds-scaffold313:962698..962799	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS018674.1	MS018674.1-protein	polypeptide