MS014283.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS014283.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Histone H2B
Location	scaffold5: 1862472 .. 1862927 (-)
Sequence length	456
RNA-Seq Expression	MS014283.1
Synteny	MS014283.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCGAAGGCAGAGAAGAAACCCGCCGAGAAGAAGCCGGCCTCCGACAAGGCGGCGGAGGAGAAGAAGACCGTTGCCGAAAAGGCCCCGGCGGAGAAGAAGCCGAAGGCTGGGAAGAAGCTGCCGAAGGAAGGCGGCGCCTCTGCCGGAGACAAGAAGAAGAAGAGGACGAAGAAGAGTGTAGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAAGTCCATCCGGACATCGGAATTTCCAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTGGCTCAGGAGTCATCGAAGTTGGCTCGCTACAACAAGAAGCCCACAATAACTTCCAGGGAGATCCAGACCGCCGTCAGGCTTGTTCTTCCCGGTGAGTTGGCCAAGCACGCTGTATCCGAGGGCACGAAGGCGGTTACTAAGTTCACAAGTTCT

mRNA sequence

ATGGCACCGAAGGCAGAGAAGAAACCCGCCGAGAAGAAGCCGGCCTCCGACAAGGCGGCGGAGGAGAAGAAGACCGTTGCCGAAAAGGCCCCGGCGGAGAAGAAGCCGAAGGCTGGGAAGAAGCTGCCGAAGGAAGGCGGCGCCTCTGCCGGAGACAAGAAGAAGAAGAGGACGAAGAAGAGTGTAGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAAGTCCATCCGGACATCGGAATTTCCAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTGGCTCAGGAGTCATCGAAGTTGGCTCGCTACAACAAGAAGCCCACAATAACTTCCAGGGAGATCCAGACCGCCGTCAGGCTTGTTCTTCCCGGTGAGTTGGCCAAGCACGCTGTATCCGAGGGCACGAAGGCGGTTACTAAGTTCACAAGTTCT

Coding sequence (CDS)

ATGGCACCGAAGGCAGAGAAGAAACCCGCCGAGAAGAAGCCGGCCTCCGACAAGGCGGCGGAGGAGAAGAAGACCGTTGCCGAAAAGGCCCCGGCGGAGAAGAAGCCGAAGGCTGGGAAGAAGCTGCCGAAGGAAGGCGGCGCCTCTGCCGGAGACAAGAAGAAGAAGAGGACGAAGAAGAGTGTAGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAAGTCCATCCGGACATCGGAATTTCCAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTGGCTCAGGAGTCATCGAAGTTGGCTCGCTACAACAAGAAGCCCACAATAACTTCCAGGGAGATCCAGACCGCCGTCAGGCTTGTTCTTCCCGGTGAGTTGGCCAAGCACGCTGTATCCGAGGGCACGAAGGCGGTTACTAAGTTCACAAGTTCT

Protein sequence

MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

Homology

[Close]

BLAST of MS014283.1 vs. NCBI nr
Match: XP_022148381.1 (histone H2B.11-like [Momordica charantia])

HSP 1 Score: 270.0 bits (689), Expect = 1.2e-68
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK
Sbjct: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFT 151
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFT
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFT 150

[Close]

BLAST of MS014283.1 vs. NCBI nr
Match: XP_038900415.1 (histone H2B [Benincasa hispida])

HSP 1 Score: 267.3 bits (682), Expect = 8.0e-68
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAPK++KKPAEKKPASDK AEEKKTVAEKAPAEKKPKAGKKLPKEGGA+AGDKKKKRTKK
Sbjct: 1   MAPKSDKKPAEKKPASDKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of MS014283.1 vs. NCBI nr
Match: XP_004143093.1 (histone H2B [Cucumis sativus] >KGN47176.1 hypothetical protein Csa_020799 [Cucumis sativus])

HSP 1 Score: 266.9 bits (681), Expect = 1.0e-67
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAPKA+KKPAEKKPAS+K AEEKKTVAEKAPAEKKPKAGKKLPKEGGA+AGDKKKKRTKK
Sbjct: 1   MAPKADKKPAEKKPASEKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of MS014283.1 vs. NCBI nr
Match: XP_008448382.1 (PREDICTED: histone H2B [Cucumis melo] >KAA0061943.1 histone H2B [Cucumis melo var. makuwa] >TYK23986.1 histone H2B [Cucumis melo var. makuwa])

HSP 1 Score: 266.2 bits (679), Expect = 1.8e-67
Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAPKA+KKPAEKKPASDK AEEKKTVAEKAPAEKKPKAGKKLPKEGGA+AGDKKKKR KK
Sbjct: 1   MAPKADKKPAEKKPASDKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRMKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of MS014283.1 vs. NCBI nr
Match: XP_028052986.1 (histone H2B-like [Camellia sinensis])

HSP 1 Score: 265.4 bits (677), Expect = 3.0e-67
Identity = 147/152 (96.71%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAPKAEKKPAEKKPAS+K AEEKKTVAEK PAEKKPKAGKKLPKEGGA+AGDKKKKRTKK
Sbjct: 1   MAPKAEKKPAEKKPASEKPAEEKKTVAEKTPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of MS014283.1 vs. ExPASy Swiss-Prot
Match: O22582 (Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3)

HSP 1 Score: 251.9 bits (642), Expect = 4.6e-66
Identity = 142/152 (93.42%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAPKAEKKPAEKKP     AEEKK VAEKAPAEKKPKAGKKLPKEGGA+AGDKKKKR KK
Sbjct: 1   MAPKAEKKPAEKKP-----AEEKKAVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRVKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147

[Close]

BLAST of MS014283.1 vs. ExPASy Swiss-Prot
Match: Q1S9I9 (Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 248.4 bits (633), Expect = 5.1e-65
Identity = 139/152 (91.45%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAPK EKKPAEKKPA +K    K TVAEKAPAEKKPKAGKKLPKEGG++AG+KKKKR+KK
Sbjct: 1   MAPKGEKKPAEKKPAEEK----KSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

[Close]

BLAST of MS014283.1 vs. ExPASy Swiss-Prot
Match: Q1SWQ1 (Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3)

HSP 1 Score: 244.6 bits (623), Expect = 7.3e-64
Identity = 137/152 (90.13%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAPK EKKPAEKKPA +K    K TVAEKAPAEKKPKAGKKLPKEGG++AG+KKKKR+KK
Sbjct: 1   MAPKGEKKPAEKKPAEEK----KSTVAEKAPAEKKPKAGKKLPKEGGSAAGEKKKKRSKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QESS+LARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 148

[Close]

BLAST of MS014283.1 vs. ExPASy Swiss-Prot
Match: P40283 (Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 242.3 bits (617), Expect = 3.6e-63
Identity = 140/152 (92.11%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAPKAEKKPAEKKPAS+K  EE K+ AEKAPAEKKPKAGKKLPKE GA  GDKKKK  KK
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAGA-GGDKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of MS014283.1 vs. ExPASy Swiss-Prot
Match: O23629 (Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3)

HSP 1 Score: 239.2 bits (609), Expect = 3.1e-62
Identity = 138/152 (90.79%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAP+AEKKPAEKKPA++K  EE K+ AEKAPAEKKPKAGKKLPKE GA  GDKKKK  KK
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAGA-GGDKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of MS014283.1 vs. ExPASy TrEMBL
Match: A0A6J1D571 (Histone H2B OS=Momordica charantia OX=3673 GN=LOC111017046 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.0e-69
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK
Sbjct: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFT 151
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFT
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFT 150

[Close]

BLAST of MS014283.1 vs. ExPASy TrEMBL
Match: A0A0A0KHC9 (Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_6G193620 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 5.1e-68
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAPKA+KKPAEKKPAS+K AEEKKTVAEKAPAEKKPKAGKKLPKEGGA+AGDKKKKRTKK
Sbjct: 1   MAPKADKKPAEKKPASEKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of MS014283.1 vs. ExPASy TrEMBL
Match: A0A5D3DK48 (Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00500 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.6e-68
Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAPKA+KKPAEKKPASDK AEEKKTVAEKAPAEKKPKAGKKLPKEGGA+AGDKKKKR KK
Sbjct: 1   MAPKADKKPAEKKPASDKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRMKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of MS014283.1 vs. ExPASy TrEMBL
Match: A0A1S3BIZ0 (Histone H2B OS=Cucumis melo OX=3656 GN=LOC103490588 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.6e-68
Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAPKA+KKPAEKKPASDK AEEKKTVAEKAPAEKKPKAGKKLPKEGGA+AGDKKKKR KK
Sbjct: 1   MAPKADKKPAEKKPASDKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRMKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of MS014283.1 vs. ExPASy TrEMBL
Match: A0A6P3ZH56 (Histone H2B OS=Ziziphus jujuba OX=326968 GN=LOC107411057 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.3e-67
Identity = 146/152 (96.05%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAPKAEKKPAEKKPAS+K AEEKKTVAEKAPAEKKPKAGKKLPKEGGA+AGDKKKKRTKK
Sbjct: 1   MAPKAEKKPAEKKPASEKPAEEKKTVAEKAPAEKKPKAGKKLPKEGGAAAGDKKKKRTKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           S ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSR
Sbjct: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 152

[Close]

BLAST of MS014283.1 vs. TAIR 10
Match: AT5G59910.1 (Histone superfamily protein )

HSP 1 Score: 242.3 bits (617), Expect = 2.6e-64
Identity = 140/152 (92.11%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAPKAEKKPAEKKPAS+K  EE K+ AEKAPAEKKPKAGKKLPKE GA  GDKKKK  KK
Sbjct: 1   MAPKAEKKPAEKKPASEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAGA-GGDKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of MS014283.1 vs. TAIR 10
Match: AT3G45980.1 (Histone superfamily protein )

HSP 1 Score: 239.2 bits (609), Expect = 2.2e-63
Identity = 138/152 (90.79%), Postives = 142/152 (93.42%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAP+AEKKPAEKKPA++K  EE K+ AEKAPAEKKPKAGKKLPKE GA  GDKKKK  KK
Sbjct: 1   MAPRAEKKPAEKKPAAEKPVEE-KSKAEKAPAEKKPKAGKKLPKEAGA-GGDKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150

[Close]

BLAST of MS014283.1 vs. TAIR 10
Match: AT3G46030.1 (Histone superfamily protein )

HSP 1 Score: 233.8 bits (595), Expect = 9.1e-62
Identity = 136/152 (89.47%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAPKAEKKPAEKKP       E+K+ AEKAPAEKKPKAGKKLPKE GA  GDKKKK  KK
Sbjct: 1   MAPKAEKKPAEKKPV------EEKSKAEKAPAEKKPKAGKKLPKEAGA-GGDKKKKMKKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESSKLARYNKKPTITSR
Sbjct: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145

[Close]

BLAST of MS014283.1 vs. TAIR 10
Match: AT2G28720.1 (Histone superfamily protein )

HSP 1 Score: 233.4 bits (594), Expect = 1.2e-61
Identity = 135/152 (88.82%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAPKA KKPAEKKPA    AEE+K VAEKAPAEKKPKAGKKLPKE      +KKKKR KK
Sbjct: 1   MAPKAGKKPAEKKPAEKAPAEEEK-VAEKAPAEKKPKAGKKLPKEAVTGGVEKKKKRVKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           S ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SKLARYNKKPTITSR
Sbjct: 61  STETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 151

[Close]

BLAST of MS014283.1 vs. TAIR 10
Match: AT1G07790.1 (Histone superfamily protein )

HSP 1 Score: 231.9 bits (590), Expect = 3.5e-61
Identity = 134/152 (88.16%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 1   MAPKAEKKPAEKKPASDKAAEEKKTVAEKAPAEKKPKAGKKLPKEGGASAGDKKKKRTKK 60
           MAP+AEKKPAEKK A+++  EE K  AEKAPAEKKPKAGKKLP +    AGDKKKKR+KK
Sbjct: 1   MAPRAEKKPAEKKTAAERPVEENK-AAEKAPAEKKPKAGKKLPPK---EAGDKKKKRSKK 60

Query: 61  SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120
           +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR
Sbjct: 61  NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSR 120

Query: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153
           EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct: 121 EIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148

The following BLAST results are available for this feature:

BLAST of MS014283.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148381.1	1.2e-68	100.00	histone H2B.11-like [Momordica charantia]	[more]
XP_038900415.1	8.0e-68	97.37	histone H2B [Benincasa hispida]	[more]
XP_004143093.1	1.0e-67	97.37	histone H2B [Cucumis sativus] >KGN47176.1 hypothetical protein Csa_020799 [Cucum...	[more]
XP_008448382.1	1.8e-67	97.37	PREDICTED: histone H2B [Cucumis melo] >KAA0061943.1 histone H2B [Cucumis melo va...	[more]
XP_028052986.1	3.0e-67	96.71	histone H2B-like [Camellia sinensis]	[more]

BLAST of MS014283.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22582	4.6e-66	93.42	Histone H2B OS=Gossypium hirsutum OX=3635 GN=HIS2B PE=2 SV=3	[more]
Q1S9I9	5.1e-65	91.45	Probable histone H2B.1 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
Q1SWQ1	7.3e-64	90.13	Probable histone H2B.2 OS=Medicago truncatula OX=3880 PE=3 SV=3	[more]
P40283	3.6e-63	92.11	Histone H2B.11 OS=Arabidopsis thaliana OX=3702 GN=At5g59910 PE=1 SV=5	[more]
O23629	3.1e-62	90.79	Histone H2B.6 OS=Arabidopsis thaliana OX=3702 GN=H2B PE=1 SV=3	[more]

BLAST of MS014283.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D571	6.0e-69	100.00	Histone H2B OS=Momordica charantia OX=3673 GN=LOC111017046 PE=3 SV=1	[more]
A0A0A0KHC9	5.1e-68	97.37	Histone H2B OS=Cucumis sativus OX=3659 GN=Csa_6G193620 PE=3 SV=1	[more]
A0A5D3DK48	8.6e-68	97.37	Histone H2B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00500 PE...	[more]
A0A1S3BIZ0	8.6e-68	97.37	Histone H2B OS=Cucumis melo OX=3656 GN=LOC103490588 PE=3 SV=1	[more]
A0A6P3ZH56	3.3e-67	96.05	Histone H2B OS=Ziziphus jujuba OX=326968 GN=LOC107411057 PE=3 SV=1	[more]

BLAST of MS014283.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59910.1	2.6e-64	92.11	Histone superfamily protein	[more]
AT3G45980.1	2.2e-63	90.79	Histone superfamily protein	[more]
AT3G46030.1	9.1e-62	89.47	Histone superfamily protein	[more]
AT2G28720.1	1.2e-61	88.82	Histone superfamily protein	[more]
AT1G07790.1	3.5e-61	88.16	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 65..83 score: 80.55 coord: 84..104 score: 75.74 coord: 106..123 score: 76.51 coord: 123..136 score: 92.45 coord: 136..149 score: 92.65
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 55..151 e-value: 4.0E-73 score: 258.9
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 10..152
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 120..142
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 7..128 e-value: 1.4E-22 score: 80.5
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 26..152 e-value: 1.4E-60 score: 204.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 36..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	PANTHER	PTHR23428:SF282	HISTONE H2B	coord: 10..152

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS014283	MS014283	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS014283.1-cds	MS014283.1-cds-scaffold5:1862472..1862927	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS014283.1	MS014283.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity